• Journal of Wetlands Research
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• v.8 no.3
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• pp.39-49
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• 2006

Seasonal biomass and carbon, nitrogen contents change of marsh club-rush (Schoenoplectus trigueter) was investigated in Nakdong river estuary, located near Busan, Korea. New shoot of S. trigueter sprouted from tuber in April and fast growth season was followed until mature in August. Mature lengths of shoot and root were 60 and 9.4 cm, respectively. The increase of biomass showed similar seasonal trends with length. Mature biomass were $3.5gind^{-1}$ in wet weight and $0.6gind^{-1}$ in dry weight. The biomass of S. trigueter in areal basis was also highest during July and August ($186gDWm^{-2}$). The shoot of S. trigueter was disappeared in October from the ground but the biomass of shoot was maintained as a form of detritus in sediment. The amount of S. trigueter detritus was about 30~50% of the biomass in August. During winter, the amount of detritus decreased with time but the biomass of root+tuber remained same, implying the root+tuber part is alive. The net productivity of S. trigueter estimated from biomass change were $538gDWm^{-2}yr^{-1}$, $240g-Cm^{-2}yr^{-1}$, $8.2g-Nm^{-2}yr^{-1}$ in dry weight, carbon and nitrogen equivalent respectively. During winter, carbon to nitrogen ratio in detritus increased implying the preferred remineralization of nitrogen during microbial degradation.

• Journal of the Korea Organic Resources Recycling Association
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• v.26 no.4
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• pp.31-43
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• 2018

This study was conducted to investigate the effects of organic farmland soil and nutrient management on soil properties depending on organic (animal manure compost and green manure [hairy vetch]) and chemical fertilization, tillage and no-tillage, and crop rotation (corn-wheat, corn-.hairy vetch). It was found that the application of organic matter such as animal manure compost and hairy vetch, increased the soil organic matter content, the soil microbial density and microbial biomass C content as compared with the chemical fertilizer treatment. It was also confirmed that the functional diversity of soil microbial community was increased. As a result of the comparison with the crop rotation and single cropping, the soil chemistry showed no significant difference between the treatments, but the corn-wheat and corn-hairy vetch rotation treatments tended to have higher microbial biomass C content and shannon's diversity index than the single cropping. Soil chemical properties of tillage and no-tillage treatments showed no significant difference between treatments. There was no statistically significant difference in substrate utilization of soil microbial community between tillage and no-tillage treatment. Correlation analysis between soil chemical properties and soil microbial activity revealed that soil organic matter content and exchangeable potassium content were positively correlated, with statistical significance, with substrate utilization, and substrate richness. To conclude, organic fertilization had positive effects on the short-term improvement of soil chemical properties and diversity of microbial communities.

• 한국신재생에너지학회:학술대회논문집
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• 2006.11a
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• pp.529-532
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• 2006

Recently the production of ethanol from lignocecllulosics has received much attention due to immense potential for conversion of renewable biometerials into biofuels and chemicals. Fomitopsis palustris causes a typycal brown-rot and is unusual in that it rapidly depolymerize the cellulose in wood without removing the surrounding lignin that normally prevents microbial attack. This study demonstrated that the brown rot basidiomycete F. palustris was able to degrade crystalline cellulose. This fungus could also produce the three major cellulases (BGL, EXG and EG) when the cells were grown on 2.0% Avicel. The fungus was able to degrade both the crystalline and amorphous forms of cellulose from woody biomasses. Moreover, we found that this fungus has the processive EG like CBH which are able to degrade the crystalline region of cellulose. To establish the cellulase system in relation with degradation of woody biomass, we performed that purification, characterization and molecular cloning of a BGL, EGs and GLA from F. palustris grown on Avicel.

• Journal of Microbiology and Biotechnology
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• v.24 no.11
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• pp.1551-1558
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• 2014

The esterase gene Est8 from the thermophilic bacterium Bacillus sp. K91 was cloned and expressed in Escherichia coli. The monomeric enzyme exhibited a theoretical molecular mass of 24.5 kDa and an optimal activity around $50^{\circ}C$ at pH 9.0. A model of Est8 was constructed using a hypothetical YxiM precursor structure (2O14_A) from Bacillus subtilis as template. The structure showed an ${\alpha}/{\beta}$-hydrolase fold and indicated the presence of a typical catalytic triad consisting of Ser-11, Asp-182, and His-185, which were investigated by site-directed replacements coupled with kinetic characterization. Asp-182 and His-185 residues were more critical than the Ser-11 residue in the catalytic activity of Est8. A comparison of the amino acid sequence showed that Est8 could be grouped into the GDSL family and further classified as an SGNH hydrolase. Est8 is a new member of the SGNH hydrolase subfamily and may employ a different catalytic mechanism.

• Journal of Microbiology and Biotechnology
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• v.29 no.6
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• pp.952-961
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• 2019

Chlorella spp. are green algae that are found across wide-ranging habitats from deserts to arctic regions, with various strains having adapted to survive under diverse environmental conditions. In this study, two novel Chlorella strains (ABC-002, ABC-008) were isolated from a freshwater lake in South Korea during the winter season and examined for possible use in the biofuel production process. The comparison of ABC-002 and ABC-008 strains with Chlorella vulgaris UTEX265 under two different temperatures ($10^{\circ}C$, $25^{\circ}C$) revealed their cold-tolerant phenotypes as well as high biomass yields. The maximum quantum yields of UTEX25, ABC-002, and ABC-008 at $10^{\circ}C$ were 0.5594, 0.6747, and 0.7150, respectively, providing evidence of the relatively higher cold-resistance capabilities of these two strains. Furthermore, both the biomass yields and lipid content of the two novel strains were found to be higher than those of UTEX265; the overall lipid productivities of ABC-002 and ABC-008 were 1.7 ~ 2.8 fold and 1.6 ~ 4.2 fold higher compared to that of UTEX265, respectively. Thus, the high biomass and lipid productivity over a wide range of temperatures indicate that C. vulgaris ABC-002 and ABC-008 are promising candidates for applications in biofuel productions via outdoor biomass cultivation.

• Proceedings of the Korean Society for Applied Microbiology Conference
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• 2000.04a
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• pp.61-66
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• 2000

• Mycobiology
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• v.32 no.4
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• pp.170-172
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• 2004

The efficiency of acid, enzyme and microbial pretreatment of rice bran was compared based on the content of cellulose, hemicellulose, reducing sugars and xylose in the substrate. An isolate of Aspergillus niger or a strain of Trichoderma viride(MTCC 800) was employed for microbial pretreatment of rice bran in solid state. Acid pretreatment resulted in the highest amount of reducing sugars followed by enzyme and microbial pretreatment. A. niger showed a higher rate of hydrolysis than T. viride. The rice bran hydrolysate obtained from the different methods was subsequently fermented to ethanol either by Zymomonas mobilis(NCIM 806) or by Pichia stipitis(NCIM 3497). P. stipitis fermentation resulted in higher ethanol(37% higher) and biomass production($76{\sim}83%$ higher) than those of Z. mobilis. Maximum ethanol production resulted at 12h in Zymomonas fermentation, while in Pichia fermentation, it was observed at 60h. Microbial pretreatment of rice bran by A. niger followed by fermentation employing P. stipitis was more efficient but slower than the other microbial pretreatment and fermentation.

• Korean Journal of Soil Science and Fertilizer
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• v.43 no.6
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• pp.995-1001
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• 2010

Biogeography is the study of the distribution of biodiversity over space and time. We report the development of a prototype database that maps of microbial diversity in the context of the geochemical and geological environment and geographic location. It aims to reveal where organisms live, and at what abundance in nation wide. Microbial data collected from agricultural land during 1999 to 2007 were categorized for mapping with ArcGIS program. Distribution maps of bacteria, fungi, Bacillus and gram negative bacteria of agricultural land showed different patterns from each other. Microbial biomass content investigated in year of 2007 was higher than in 1999.

• Asian-Australasian Journal of Animal Sciences
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• v.11 no.3
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• pp.209-216
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• 1998

The paper presented here is aimed at increasing knowledge on purine metabolism in ruminants and hence the quantification of microbial cells entering the small intestine from urinaη excretion of purine derivatives. Nucleic acid metabolisms of micro-organisms in the rumen, digestion and absorption of nucleic acids entering the intestines, metabolisms of absorbed and endogenous purines involving de novo synthesis of nucleic acids in the ruminants host, and the relationship between absorbed and excreted purines are reviewed. Principal concerns about an amount of purine derivatives excreted in urine in relation to a change in purine-N: total-N ratios in rumen microbes that leave the rumen are discussed. The use of urinary excretion of purine derivatives as an indicator of the amount of microbial biomass leaving the rumen has to be done with some caution since it may be impossible to get a representative sample of microbes entering the intestine and thus yield estimates are relative rather than absolute.

• Proceedings of the Microbiological Society of Korea Conference
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• 2003.05a
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• pp.13-15
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• 2003

Studies on marine microbial diversity using direct analysis of rRNA sequences have revealed previously unrecognized microbes and novel phylogenetic lineages that represent major components of global microbial assemblages. This diversity in the marine biosphere offers opportunities for research and application in the field of biotechnology; global gas exchange, nutrient and element cycling, biomass md food production, marine bioproducts, and bioprocesses. Especially, deep-sea encompasses the extremes of virtually at] environmental parameters found on Earth and provides extreme microorganisms. In this study several extreme microorganisms were successfully isolated from the deep-sea sediment samples obtained by joining ocean cruises for last 2 years and some of them will be introduced.