• Title/Summary/Keyword: leaf index

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Single-trait GWAS of Leaf Rolling Index with the Korean Rice Germplasm

  • ByeongYong Jeong;Muhyun Kim;Tae-Ho Ham;Seong-Gyu Jang;Ah-Rim Lee;Min young Song;Soon-Wook Kwon;Joohyun Lee
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2022.10a
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    • pp.17-17
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    • 2022
  • Leaves are an important organism for photosynthesis and transpiration. The shape of leaf is crucial factor affecting plant architecture. V-shape leaf rolling is enhancing canopy photosynthesis by increasing the CO2 penetration and the light capture by reducing the shadow between the leaves. Therefore, moderate leaf rolling is thought to more high grain yield per area than flat leaf. We investigated 278 KRICE_CORE accession's Adaxial Leaf Rolling Index (LRI) in first heading using the following equation. For each accession, genomic DNA was used for sequencing. We sequenced the genomics with ~8 X coverage to detect SNPS. Raw reads were aligned against the rice reference (IRGSP 1.0) for SNP identification and genotype calling. To generate genotype data for GWAS, SNPs were filtered with minor allele frequency 0.05. Finally, 841,134 high-quality SNPs were used for our GWAS. The significant threshold was -log10(P)>7.23. From the results, 2 significance SNP were detected. Considering the LD block of 250kbp, 60 candidate gene were selected including Hypothetical gene and Conserved gene. In this poster, we analyzed candidate gene affecting adaxial Leaf Rolling through single-trait GWAS.

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Single-trait GWAS of Leaf Rolling Index with the Korean Rice Germplasm

  • ByeongYong Jeong;Muhyun Kim;Tae-Ho Ham;Seong-Gyu Jang;Ah-Rim Lee;Min young Song;Soon-Wook Kwon;Joohyun Lee
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2022.10a
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    • pp.243-243
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    • 2022
  • Leaves are an important organism for photosynthesis and transpiration. The shape of leaf is crucial factor affecting plant architecture. V-shape leaf rolling is enhancing canopy photosynthesis by increasing the CO2 penetration and the light capture by reducing the shadow between the leaves. Therefore, moderate leaf rolling is thought to more high grain yield per area than flat leaf. We investigated 278 KRICE CORE accession's Adaxial Leaf Rolling Index (LRI) in first heading using the following equation. For each accession, genomic DNA was used for sequencing. We sequenced the genomics with ~8 X coverage to detect SNPS. Raw reads were aligned against the rice reference (IRGSP 1.0) for SNP identification and genotype calling. To generate genotype data for GWAS, SNPs were filtered with minor allele frequency 0.05. Finally, 841,134 high-quality SNPs were used for our GWAS. The significant threshold was -log10(P) >7.23. From the results, 2 significance SNP were detected. Considering the LD block of 250kbp, 60 candidate gene were selected including Hypothetical gene and Conserved gene. In this poster, we analyzed candidate gene affecting adaxial Leaf Rolling through single-trait GWAS.

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Effects of Leaf and Pod Removal on Dry Matter Accumulation of Soybean Plants (적엽 및 제협처리가 콩의 건물축적에 미치는 영향)

  • 성락춘;박지희
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.38 no.4
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    • pp.324-329
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    • 1993
  • Effects of leaf and pod removal on changes in leaf and seed number, and leaf, seed, pod and stem dry weight of soybean [Glycine max (L,) Merr.] cultivar ‘Hwangkeumkong’ were measured at the research farm of Korea University in 1992. The upper 40% and lower 60% of leaves and pods were subjected to treatments at the growth stage of beginning pod(R3). Leaf number and dry weight of lower part were increased by upper leaf-lower pod removal, but seed number and dry weight were decreased. Upper leaf-lower pod removal increased lower stem dry weight and decreased upper pod dry weight. Leaf-seed ratio of the upper leaf-lower pod removal was the highest with 3.54 and harvest index was the lowest with 27% among the treatments. Lower leaf-upper pod removal showed that more assimilates from upper leaves were translocated to lower seeds than from lower leaves to upper seeds in upper leaf-lower pod removal treatment.

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Using Chlorophyll Fluorescence and Vegetation Indices to Predict the Timing of Nitrogen Demand in Pentas lanceolata

  • Wu, Chun-Wei;Lin, Kuan-Hung;Lee, Ming-Chih;Peng, Yung-Liang;Chou, Ting-Yi;Chang, Yu-Sen
    • Horticultural Science & Technology
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    • v.33 no.6
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    • pp.845-853
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    • 2015
  • The objective of this study was to predict the timing of nitrogen (N) demand through analyzing chlorophyll fluorescence (ChlF), soil-plant analysis development (SPAD), and normalized difference vegetation index (NDVI), which are positively correlated with foliar N concentration in star cluster (Pentas lanceolata). The plants were grown in potting soil under optimal conditions for 30 d, followed by weekly irrigation with five concentrations (0, 4, 8, 16, and 24 mM) of N for an additional 30 d. These five N application levels corresponded to leaf N concentrations of 2.62, 3.48, 4.00, 4.23, and 4.69%, respectively. We measured 13 morphological and physiological parameters, as well as the responses of these parameters to various N-fertilizer treatments. The general increases in Dickson's quality index (DQI), above-ground dry weight (DW), total DW, flowering rate, ${\Delta}F/Fm$', and qP in response to treatment with 0 to 8 mM N were similar to those of SPAD, NDVI, and Fv/Fm. Consistent and strong correlations ($R^2$= 0.60 to 0.85) were observed between leaf N concentration (%) and SPAD, NDVI, ${\Delta}F/Fm$', and above-ground DW. Validation of leaf S PAD, NDVI, and ${\Delta}F/Fm$' revealed that these vegetation indices are accurate predictors of leaf N concentration that can be used for non-destructive estimation of the proper timing for N-solution irrigation of P. lanceolata. Moreover, irrigation with 8 mM N-fertilizer i s recommended w hen leaf N concentration, SPAD, NVDI, and ${\Delta}F/Fm$' ratios are reduced from their saturation values of 4.00, 50.68, 0.64, and 0.137%, respectively.

Selection of the Most Sensitive Waveband Reflectance for Normalized Difference Vegetation Index Calculation to Predict Rice Crop Growth and Grain Yield

  • Nguyen Hung The;Lee Byun Woo
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.49 no.5
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    • pp.394-406
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    • 2004
  • A split-plot designed experiment including four rice varieties and 10 nitrogen levels was conducted in 2003 at the Experimental Farm of Seoul National University, Suwon, Korea. Before heading, hyperspectral canopy reflectance (300-1100nm with 1.55nm step) and nine crop variables such as shoot fresh weight (SFW), leaf area index, leaf dry weight, shoot dry weight, leaf N concentration, shoot N concentration, leaf N density, shoot N density and N nutrition index were measured at 54 and 72 days after transplanting. Grain yield, total number of spikelets, number of filled spikelets and 1000-grain weight were measured at harvest. 14,635 narrow-band NDVIs as combinations of reflectances at wavelength ${\lambda}l\;and\;{\lambda}2$ were correlated to the nine crop variables. One NDVI with the highest correlation coefficient with a given crop variable was selected as the NDVI of the best fit for this crop variable. As expected, models to predict crop variables before heading using the NDVI of the best fit had higher $r^2$ (>10\%)$ than those using common broad- band NDVI red or NDVI green. The models with the narrow-band NDVI of the best fit overcame broad- band NDVI saturation at high LAI values as frequently reported. Models using NDVIs of the best fit at booting showed higher predictive capacity for yield and yield component than models using crop variables.

Gene Manipulation of Pin 2(Proteinase Inhibitor II) to the Cottonwood Leaf Beetle(Coleoptera : Chrysomelidae) in Transgenic Poplar(Populus deltodies × P. nigra) (형질전환(形質轉換)된 포플러의 딱정벌레에 대한 저항성(抵抗性) 유전자(遺傳子)(Proteinase Inhibitor II) 발현(發現))

  • Kang, Hoduck
    • Journal of Korean Society of Forest Science
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    • v.86 no.4
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    • pp.407-414
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    • 1997
  • The resistance of a non-transgenic poplar clone, 'Ogy' and three transgenic poplar lines to the cottonwood leaf beetle, Chrysomela scripta F., was evaluated by in vitro feeding. The lines were transformed with neomycin phosphotransferase II(NPT II) as a selectable marker, proteinase inhibitor II(pin2) as a resistance gene, and CaMV 35S as a promoter. An efficient method of sterilizing the beetle eggs and introducing them into plant tissue cultures was developed. The resistance of the transgenic lines was investigated in terms of effects tin leaf area consumed, insect weight, insect developmental stages, and plantlet root dry weight after feeding. Also, leaf area consumed was examined by leaf age as measured through leaf plastochron index(LPI). The leaf area consumed and insect weight were highly significant between transformants and control, and insect development in vitro was significant among the transgenic lines. Larval infestation was the most severe around LPI 4 to 5 which were young leaves. The system provided a quick, highly controlled method to screen developing transgenic plantlets directly.

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Phenological Studies of Deciduous Trees in the Cool Temperate Region of Japan

  • Jun, Kala;Hayashi, Ichiroku
    • Journal of Ecology and Environment
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    • v.31 no.3
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    • pp.193-200
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    • 2008
  • We obtained quantitative information on leaf unfolding and leaf shedding by observing 45 species of cool temperate deciduous trees in an arboretum over 5 growing seasons. These trees were in leaf (the foliage period) for 207 days on average after 1 April; 50% of leaves had been shed by 192 days after 1 April. Duration from the start of leaf unfolding to 50% leaf shedding was 157 days on average. Leaf unfolding began 35 days on average after 1 April. For leaf unfolding to begin, a$ 51^{\circ}C{\cdot}day$ of cumulated daily mean air temperature above $5^{\circ}C$ from 1 January (modified Kira's warmth index) was needed. Fifty-nine days elapsed between initiation and the final stage of leaf unfolding. The period of net photosynthetic assimilation was 157 days. The species with succeeding- type leaf unfolding associated with the anemochore seed type dominated the early stage of succession, while the species with flush-type leaf unfolding tended to dominate the late stage of succession. Few species were found in regions where late frosts occur after the day when the cumulative temperature for leaf unfolding is achieved. Biological characteristics include time of leaf unfolding, which affects the life history of each species, so that each species occupies its own niche in the stand. We conclude that that leaf phenology, such as timing of leaf unfolding and leaf shedding, is one of the components of each species' ecological characteristics.

Estimation of Leaf Area Index by Plant Canopy Analyzer in Rice (군락구조계를 이용한 벼 엽면적 측정)

  • Park H. K.;Choi W. Y.;Back N. H.;Kim S. S.;Kim B. K.;Kim K. K.
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.49 no.6
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    • pp.463-467
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    • 2004
  • This study was carried out to estimate of leaf area index (LAI) rapidly using plant canopy analyzer, comparing with specific leaf area (SLA) and leaf area ratio (LAR) in rice from 2001 to 2002 at Honam Agricultural Research Institute in Iksan Korea. The relationship between LAI values taken by plant canopy analyzer and by leaf area meter showed high correlation at each growth stages of rice. LAIs obtained by plant canopy analyzer were highly correlated with that by leaf area meter which were the highest in Dongjinbyeo and the lowest in Hapcheon1. Specific leaf area (SLA) of all rice cultivars were tend to decrease remarkably with the progress of growth stage. It was found that the SLA of Dasanbyeo was the highest and that of Hapcheon1 was the lowest among rice cultivars tested. Leaf area ratios (LARs) was also decreased with the progress of growth stage.