• Title/Summary/Keyword: l-diversity

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Microbial Community Diversity in Anaerobic Reactors Digesting Turkey, Chicken, and Swine Wastes

  • Ziganshina, Elvira E.;Belostotskiy, Dmitry E.;Shushlyaev, Roman V.;Miluykov, Vasili A.;Vankov, Petr Y.;Ziganshin, Ayrat M.
    • Journal of Microbiology and Biotechnology
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    • v.24 no.11
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    • pp.1464-1472
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    • 2014
  • The microbial community structures of two continuous stirred tank reactors digesting turkey manure with pine wood shavings as well as chicken and swine manure were investigated. The reactor fed with chicken/swine wastes displayed the highest organic acids concentration (up to 15.2 g/l) and ammonia concentration (up to 3.7 g/l ammonium nitrogen) and generated a higher biogas yield (up to $366ml/g_{VS}$) compared with the reactor supplied with turkey wastes (1.5-1.8 g/l of organic acids and 1.6-1.7 g/l of ammonium levels; biogas yield was up to $195ml/g_{VS}$). The microbial community diversity was assessed using both sequencing and profiling terminal restriction fragment length polymorphisms of 16S rRNA genes. Additionally, methanogens were analyzed using methyl coenzyme M reductase alpha subunit (mcrA) genes. The bacterial community was dominated by members of unclassified Clostridiales with the prevalence of specific clostridial phylotypes in each reactor, indicating the effect of the substrate type on the community structure. Of the methanogenic archaea, methanogens of the genus Methanosarcina were found in high proportions in both reactors with specific methanosarcinas in each reactor, whereas the strict hydrogenotrophic methanogens of Methanoculleus sp. were found at significant levels only in the reactor fed with chicken/swine manure (based on the analyses of 16S rRNA gene). This suggests that among methanogenic archaea, Methanosarcina species which have different metabolic capabilities, including aceticlastic and hydrogenotrophic methanogenesis, were mainly involved in anaerobic digestion of turkey wastes.

Effects of Weight Control Programs on Limiting Obesity and Improving the Eating Behaviors of Adult Obese Women (성인 비만 여성을 위한 체중조절 프로그램이 비만과 식행동의 개선에 미치는 효과)

  • Kim, Kyung-Hee
    • Journal of the Korean Society of Food Culture
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    • v.24 no.6
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    • pp.784-792
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    • 2009
  • This study was conducted to investigate the effects of weight control programs on BMI, serum profiles, nutrition knowledge and eating behaviors of adult obese women. The subjects of this study were 33 adult obese women aged 30-65 years residing in Seoul. The weight control program for obese women included nutritional education, cognitive behavioral therapy and exercise for 12 weeks. The weight control experience of the subjects was 60.6%. They preferred physical exercise and diet restriction to weight control and 72.7% of subjects answered that the reasons for wanting to control their weight was health. The BMI of test subjects significantly decreased (p<0.001) from 28.3 to 27.1 after the 12 weeks of the weight control program. In addition, the % body fat significantly decreased (p<0.001) from 36.4% to 34.5% after completion of the weight control program. SGPT levels in the serum were also significantly decreased (p<0.05) after the program. Triglyceride levels significantly decreased from 194.9 mg/dL to 98.1 mg/dL (p<0.01) and the HDL cholesterol level significantly increased (p<0.01) from 55.8 mg/dL to 60.0 mg/dL after completion of the weight control program. Nutritional knowledge and eating behavior scores were significantly increased (p<0.001). In addition, the eating self-efficacy of the subjects was significantly increased (p<0.01); however, the food diversity scores were not changed after the program. These results suggest that the weight control program for adult obese women may be effectively used to promote weight reduction and improve nutritional knowledge and eating behavior.

Planting Structure and Ecological Characteristics of Green Spaces at the Dangjin Steam Power Plant (당진화력발전소 녹지공간의 식재현황 및 생태적 특성 분석)

  • Kang Hyun-Kyung;Lee Soo-Dong;Han Bong-Ho
    • Journal of the Korean Institute of Landscape Architecture
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    • v.33 no.6 s.113
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    • pp.78-89
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    • 2006
  • This study was conducted to analyze the planting structure and ecological characteristics of greon spaces on the grounds of e Dangjin steam power plant. To achieve these goals, we surveyed existing vegetation, plant community structure, Plant volume and growth rate. Based on e vegetation analysis, existing vegetation was classified into six types: herbaceous species $(70.54\%)$, evergreen coniferous trees $(21.17\%)$, deciduous broad-leaved trees $(5.10\%)$, deciduous coniferous trees $(1.47\%)$, shrubs $(0.12\%)$, and other types $(1.59\%)$. The coal storage, office, and playground areas were community is the natural forest area where a Pinus thunbergii / Pinus densiflora community is distributed in terms of vegetation structure, species diversity, plant volume, and growth rate. The artificial green spaces(near the coal storage, office, playground areas) had a single-layer structure. Species diversity indices of the artificial green areas were $0.1655\~0.4807$ compared to 0.8628 in the natural forest, which presented a good growth environment. Also, the plant volume in the artificial green space was lower than that of the natural green space. Therefore, it would be desirable to develope a multi-layer structure similar to that of the vegetation in the natural green space in order to improve the amount of plant volume. The plant-damage ratio of Pinus thunbergii was $52.48\%$ in the coal storage area, and $8.48\~ 11.52\%$, in the other survey areas. Also, the vitality of Pinus thunbergii was $15.45k{\Omega}$ in the coal storage areas, which indicates bad growing conditions. This suggests that soil characteristics and dust have a bad impact on growth. The investigation into deciduous tres' growth status showed that appropriate plants would be Albizzia julibrissin, Acer palmatum var. sanguineum, Acer palmatum, Malus spp., Prunus sargentii.

Seasonal Changes of Phytoplankton Communities in the Paksil and Jungyang Marshes (박실지와 정양지의 식물플랑크톤 군집의 계절 변동)

  • Lee, Gyeong-Rak;Choe, Jae-Sin;Kim, Han-Sun
    • ALGAE
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    • v.18 no.4
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    • pp.273-280
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    • 2003
  • The physico-chemical characteristics and seasonal variations of phytoplankton community were investigated in the Paksil and Jungyang marshes. Water and phytoplankton samples for analyses were collected monthly from April 2002 to March 2003. A total of 421 taxa of phytoplankton belonging to eight classes identified. The number of taxa was highest in Bacillariophyceae, followed by Chlorophyceae, Euglenophyceae, Cyanophyceae, Chrysophyceae, Dinophyceae, Xanthophyceae and Cryptophyceae. The standing crops ranged from 1.25 ${\times}$ $10^6$ to 5.85 ${\times}$ $10^6$ cells ${\cdot}l^{-1}$ in Paksil marsh and 0.25 to 9.63 ${\times}$ $10^6$ cells ${\cdot}l^{-1}$ in Jungyang marsh. The highest algal density at Paksil marsh was recorded in October during the high development of Chlorococcales while the lowest value occured in July. In the Jungyang marsh, the maximum algal density was recorded in October when Cryptomonas sp. and Mallomonas sp. accounted for 64% to total cell numbers and the lowest cell density was observed in January due to the decrease of Chlorophyceae. The dominant species were represented by Euglena proxima, Trachelomonas oblonga, Trachelomonas volvocina of Euglenophyceae, Dictyosphaerium pulchellum, Monoraphidium griffithii, Oocystis parva of Chlorophyceae, Dinobryon sertularia, Kephyrion rubri-claustri of Chrysophyceae, Achnanthes minutissima of Bacillariophyceae and Cryptomonas sp. of Cryptophyceae in the Paksil and Jungyang marshes. Phytoplankton diversity(H’) and dominance index varied rather irregularly throughout the sampling period but they were significantly correlated. The highest diversity(H’Paksil = 3.68, H’Jungyang = 3.63) coincided with the lowest values of dominance(DPaksil = 0.05, DJungyang = 0.05)

Microbial Community Profiling in cis- and trans-Dichloroethene Enrichment Systems Using Denaturing Gradient Gel Electrophoresis

  • Olaniran, Ademola O.;Stafford, William H.L.;Cowan, Don A.;Pillay, Dorsamy;Pillay, Balakrishna
    • Journal of Microbiology and Biotechnology
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    • v.17 no.4
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    • pp.560-570
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    • 2007
  • The effective and accurate assessment of the total microbial community diversity is one of the primary challenges in modem microbial ecology, especially for the detection and characterization of unculturable populations and populations with a low abundance. Accordingly, this study was undertaken to investigate the diversity of the microbial community during the biodegradation of cis- and trans-dichloroethenes in soil and wastewater enrichment cultures. Community profiling using PCR targeting the l6S rRNA gene and denaturing gradient gel electrophoresis (PCR-DGGE) revealed an alteration in the bacterial community profiles with time. Exposure to cis- and trans-dichloroethenes led to the disappearance of certain genospecies that were initially observed in the untreated samples. A cluster analysis of the bacterial DGGE community profiles at various sampling times during the degradation process indicated that the community profile became stable after day 10 of the enrichment. DNA sequencing and phylogenetic analysis of selected DGGE bands revealed that the genera Acinetobacter, Pseudomonas, Bacillus, Comamonas, and Arthrobacter, plus several other important uncultured bacterial phylotypes, dominated the enrichment cultures. Thus, the identified dominant phylotypes may play an important role in the degradation of cis- and trans-dichloroethenes.

Successful Enrichment of Rarely Found Candidatus Anammoxoglobus propionicus from Leachate Sludge

  • Hsu, Shu-Chuan;Lai, Yen-Chun;Hsieh, Ping-Heng;Cheng, Pun-Jen;Wong, Suen-Shin;Hung, Chun-Hsiung
    • Journal of Microbiology and Biotechnology
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    • v.24 no.7
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    • pp.879-887
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    • 2014
  • Bacteria that mediate the anaerobic oxidation of ammonium (anammox) have been detected in natural ecosystems, as well as various wastewater treatment systems. In this study, sludge from a particular landfill leachate anaerobic treatment system was selected as the incubation seed for anammox microorganism enrichment owing to its possible anammox activity. Transmission electron microscopy observation, denaturing gradient gel electrophoresis analysis, and cloning/sequencing techniques were applied to identify the diversity of anammox microorganisms throughout the incubation. During the early stage of operation, the diversity of anammox microorganisms was similar to the original complex microbes in the seed sludge. However, as incubation time increased, the anammox microorganism diversity within the system that was originally dominated by Candidatus (Ca.) Brocadia sp. was replaced by Ca. Anammoxoglobus propionicus. The domination of Ca. Anammoxoglobus propionicus produced a stable removal of ammonia (70 mg-N/l) and nitrite (90 mg-N/l), and the total nitrogen removal efficiency was maintained at nearly 95%. The fluorescence in situ hybridization results showed that Ca. Anammoxoglobus propionicus was successfully enriched from $1.8{\pm}0.6%$ initially to $65{\pm}5%$ after 481 days of operation. Therefore, the present results demonstrated the feasibility of enriching Ca. Anammoxoglobus propionicus from leachate sludge, even though the original cell count was extremely low. Application of this seldom found anammox organism could offer an alternative to current ammonia-nitrogen treatment.

Performance Analysis of DS/CDMA with Diversity and Channel Coding in a Land-Mobile Satellite Channel (육상이동 위성채널에서 다이버시티와 채널 부호를 적용한 DS / CDMA 성능 분석)

  • Kim, Hong-Chil;Kim, Nam
    • The Journal of Korean Institute of Electromagnetic Engineering and Science
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    • v.8 no.1
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    • pp.42-51
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    • 1997
  • The satellite channel with a line-of-sight signal component is modeled by a shadowed Rician fading channel. We adopt a direct-sequence / code division multiple access (DS / CDMA), which has the advantage to suppress the multipath effect and increase the user capacity. The performance which is evaluated by bit error probability is subjected to the influence of branch number, multi-user number, and spreading code-length. As the result of the analysis, performance advance is achieved with multi-user number decreasing, number of brnaches increasing, and spreading code-length increasing as chip duration is constant. To use both of diversity combining scheme and channel coding is more efficient for performance improvement than the case using diversity combining scheme only. The use of BCH coding and convolutional coding shows better consequence than Hamming coding. Totally, the performance degradation for heavy shadowing is much larger than that for light and average shadowing as heavy shadowing decreases LOS signal.

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Development of SSR Markers and Their Use in Studying Genetic Diversity and Population of Finger Millet (Eleusine coracana L. Gaertn.)

  • Lee, Kyung Jun;Yoon, Mun-Sup;Shin, Myoung-Jae;Lee, Jung-Ro;Cho, Yang-Hee;Lee, Ho-Sun;Ma, Kyung-Ho;Lee, Gi-An
    • Plant Breeding and Biotechnology
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    • v.5 no.3
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    • pp.183-191
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    • 2017
  • Finger millet (Eleusine coracana L. Gaertn.) is an important cereal crop in eastern Africa and southern India with excellent grain storage capacity and the unique ability to thrive in extreme environmental conditions. In this study, we analyzed the genetic diversity and population structure of finger millet using 12 developed microsatellites. By sequencing 815 clones from an SSR-enriched genomic DNA library, we obtained 12 polymorphic SSR markers, which also revealed successful amplicons in finger millet accessions. Using the developed SSR markers, we estimated genetic diversity and population structure among 76 finger millet accessions in Asia, Africa, and unknown origins. The number of alleles ranged from 2 to 9, with an average of 3.3 alleles. The mean values of observed heterozygosity and expected heterozygosity were 0.27 and 0.35, respectively. The average polymorphism information content was 0.301 in all 76 finger millet accessions. AMOVA analysis showed that the percentage of molecular variance among the populations was 1%, that among individuals was 5%, and that within individuals was 94%. In STRUCTURE analysis, the 76 finger millet accessions were divided into two subpopulations which had an admixture of alleles. There was a correspondence among PCoA, AMOVA, and population structure. This study may form the basis for a finger millet breeding and improvement program.

16S rRNA gene-based sequencing of cucumber (Cucumis sativus L.) microbiota cultivated in South Korea (16S rRNA 유전자 염기서열 분석에 기반한 국내 재배 오이의 상재균총 분석)

  • Seo, Dong Woo;Kim, Seung Min;Lee, Heoun Reoul;Yum, Su-jin;Jeong, Hee Gon
    • Korean Journal of Food Science and Technology
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    • v.53 no.3
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    • pp.334-343
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    • 2021
  • Various vegetables, including cucumbers, have a high probability of foodborne illness because they are usually eaten raw. In this study, we analyzed the 16S rRNA gene sequences of the cucumber (Cucumis sativus L.) microbiota. The diversity indices of cucumber cultivated in May were higher than in cucumber cultivated in November. At the phylum level, Proteobacteria, Firmicutes, and Actinobacteria were predominant. The classes generally comprised Gammaproteobacteria, Bacilli, Alphaproteobacteria, and Actinobacteria. At the genus level, the proportions of Aureimonas, Escherichia, and Microbacterium in samples from May were relatively high, whereas Enterococcus, Pseudomonas, and Rhizobium accounted for a higher proportion in samples from November. Moreover, it is noteworthy that potential pathogenic genera such as Acinetobacter, Aerococcus, Aureimonas, Enterobacter, Enterococcus, Escherichia, Pantoea, Pseudomonas, and Staphylococcus were detected. Although further studies on the characteristics of potential pathogens are required, our results can be used to improve the food safety of vegetables.

A Hybrid K-anonymity Data Relocation Technique for Privacy Preserved Data Mining in Cloud Computing

  • S.Aldeen, Yousra Abdul Alsahib;Salleh, Mazleena
    • Journal of Internet Computing and Services
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    • v.17 no.5
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    • pp.51-58
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    • 2016
  • The unprecedented power of cloud computing (CC) that enables free sharing of confidential data records for further analysis and mining has prompted various security threats. Thus, supreme cyberspace security and mitigation against adversaries attack during data mining became inevitable. So, privacy preserving data mining is emerged as a precise and efficient solution, where various algorithms are developed to anonymize the data to be mined. Despite the wide use of generalized K-anonymizing approach its protection and truthfulness potency remains limited to tiny output space with unacceptable utility loss. By combining L-diversity and (${\alpha}$,k)-anonymity, we proposed a hybrid K-anonymity data relocation algorithm to surmount such limitation. The data relocation being a tradeoff between trustfulness and utility acted as a control input parameter. The performance of each K-anonymity's iteration is measured for data relocation. Data rows are changed into small groups of indistinguishable tuples to create anonymizations of finer granularity with assured privacy standard. Experimental results demonstrated considerable utility enhancement for relatively small number of group relocations.