• Journal of Microbiology
• /
• 제44권2호
• /
• pp.248-253
• /
• 2006

Lymphocystis disease virus (LCDV) is the causative agent of lymphocystis disease. The viruses have been divided into three genotypes (genotype I for LCDV-1, II for Japanese flounder isolates, and III for rockfish isolates) on the basis of major capsid protein (MCP) gene sequences. In this study, we developed a multiplex PCR primer set in order to distinguish these genotypes. We also analyzed the MCP gene of a new LCDV isolate from the sea bass (SB98Yosu). Comparison of sequence identities between SB98Yosu and eight Japanese flounder isolates, revealed identity of more than 90.1 % at nucleotide level and 96.5% at deduced amino acid level, respectively. Phylogenetic analyses based on the MCP gene showed that SB98Yosu belongs to genotype II, along with Japanese flounder isolates. Multiplex PCR based on the MCP gene allowed us to identify these genotypes in a simple and rapid manner, even in a sample that contained two genotypes, in this case genotypes II and III.

• 한국가금학회지
• /
• 제37권1호
• /
• pp.89-99
• /
• 2010

국내에서는 2000년대 초까지 3년 내지 5년 간격으로 주기적인 뉴캣슬병 대유행을 겪어왔다. 이 시기에 최소한 5개의 다른 유전자형의 뉴캣슬병 바이러스가 국내 뉴캣슬병 대유행과 관련이 있었다. 1970년대 이전엔 유전자형 III형, 1980년대 중반에 유전자형 V형, 1980년대 말에서 1990년대 초에는 유전자형 VI형, 1990년대 중반에 유전자형 VIIa형, 그리고 1990년대 말부터 2000년대 초에는 유전자형 VIId형이 관련되어 있었다. 최근 국내에서 유행한 뉴캣슬병 바이러스는 중국과 일본과 같은 인근국가와 지리적인 공통점을 보였다. 과거 유행했던 다른 유전자형과 마찬가지로, 유전자형 VIId형 또한 내장친화성 강독 뉴캣슬병 바이러스였다. 현재 사용 중인 백신주와 최근 유행하는 VIId형 바이러스간에 항원적 차이는 존재하지만, 시판 백신에 의한 방어 효능에는 문제가 없는 것으로 확인되었다.

• Journal of Veterinary Science
• /
• 제21권3호
• /
• pp.43.1-43.13
• /
• 2020

Background: Canine parvovirus (CPV) and feline panleukopenia (FPV) cause severe intestinal disease and leukopenia. Objectives: In Korea, there have been a few studies on Korean FPV and CPV-2 strains. We attempted to investigate several genetic properties of FPV and CPV-2. Methods: Several FPV and CPV sequences from around world were analyzed by Bayesian phylo-geographical analysis. Results: The parvoviruses strains were newly classified into FPV, CPV 2-I, CPV 2-II, and CPV 2-III genotypes. In the strains isolated in this study, Gigucheon, Rara and Jun belong to the FPV, while Rachi strain belong to CPV 2-III. With respect to CPV type 2, the new genotypes are inconsistent with the previous genotype classifications (CPV-2a, -2b, and -2c). The root of CPV-I strains were inferred to be originated from a USA strain, while the CPV-II and III were derived from Italy strains that originated in the USA. Based on VP2 protein analysis, CPV 2-I included CPV-2a-like isolates only, as differentiated by the change in residue S297A/N. Almost CPV-2a isolates were classified into CPV 2-III, and a large portion of CPV-2c isolates was classified into CPV 2-II. Two residue substitutions F267Y and Y324I of the VP2 protein were characterized in the isolates of CPV 2-III only. Conclusions: We provided an updated insight on FPV and CPV-2 genotypes by molecular-based and our findings demonstrate the genetic characterization according to the new genotypes.

• 대한예방의학회:학술대회논문집
• /
• 대한예방의학회 2002년도 제10회 춘계 심포지움 연제집
• /
• pp.93-93
• /
• 2002

• Asian-Australasian Journal of Animal Sciences
• /
• 제16권11호
• /
• pp.1560-1564
• /
• 2003

The study was carried out in Sahiwal, Holstein Friesian, Jersey and crossbred cattle to find out the effect of genotype of beta-lactoglobulin gene on milk production traits. The polymorphism at beta-lactoglobulin gene was identified by conducting PCRRFLP studies. A 398 bp fragment of the gene was amplified and digested with Hae III restriction enzyme. The two alleles A and B and three genotypes AA, AB and BB were identified in all cattle breeds. The frequency of B allele was comparatively higher than that of A allele. The AA genotype produced significantly higher milk yield in Sahiwal cattle whereas BB genotype yielded higher milk in Holstein friesian cattle. In other cattle breeds the genotypic effect was non-significant. In conclusion it may be stated that the genotype with significantly higher milk yield may be favoured in the farm along with other conventional selection criteria to enhance the milk production of animals.

• 대한의생명과학회지
• /
• 제8권4호
• /
• pp.275-282
• /
• 2002

This study was carried out to investigate the effect of fibrinogen genotype and other characteristics on the plasma fibrinogen levels. Many studies have conformed that high plasma fibrinogen levels are associated with the increased risk of ischaemic heart disease, stroke and arterial disease. And fibrinogen levels are related with age, obesity, cholesterol and alcohol consumption, genotypes. For this study the blood samples were collected from 93 healthy Koreans (66 males and 27 females). The blood samples were individually analyzed by smoking status, cholesterol levels, genotype, age, and gender. The plasma fibrinogen was assayed by clotting method (modified Clauss assay) and cholesterol was assayed by cholesterol oxidase method. Subjects were classified by current smokers, ex-smokers (<6 month), or nonsmokers. The $\beta$-fibrinogen genotype was detected by PCR of relevant region and digestion with HaeIII, with the H$_1$H$_1$ allele allowing cleavage by this restriction enzyme and H$_2$H$_2$ allele being refractory. In conclusion, the study shows that the factor of the increasement in the fibrinogen level was closely related with the cholesterol level, smoking status and genotype (H$_1$H$_2$); but there was no significant difference by gender, Especially, among the people over 50 years of age, fibrinogen level was higher with the increasement of cholesterol level (<200 mg/dl), current smoker, and genotype H$_1$H$_2$.

• Journal of Veterinary Science
• /
• 제22권6호
• /
• pp.88.1-88.6
• /
• 2021

Toxoplasma gondii consists of three genotypes, namely genotype I, II and III. Based on its virulence, T. gondii can be divided into virulent and avirulent strains. This study intends to evaluate an alternative method for predicting T. gondii virulence using hierarchical cluster analysis based on complete coding sequences (CDS) of sag1, gra7 and rop18 genes. Dendrogram was constructed using UPGMA with a Kimura 80 nucleotide distance measurement. The results showed that the prediction errors of T. gondii virulence using sag1, gra7 and rop18 were 7.41%, 6.89% and 9.1%, respectively. Analysis based on CDS of gra7 and rop18 was able to differentiate avirulent strains into genotypes II and III, whereas sag1 failed to differentiate.

• 한국가금학회:학술대회논문집
• /
• 한국가금학회 2005년도 제22차 정기총회 및 학술발표회
• /
• pp.44-52
• /
• 2005

내장친화성 뉴캣슬병 바이러스 한국분리주의 분자역학적 분석 뉴캣슬병 바이러스 한국분리주의 유전자 염기서열과 아미노산 염기서열을 분석한 후 미국, 유럽, 일본, 대만과 중국 등지에서 보고된 뉴캣슬병 바이러스의 유전자와 비교분석을 실시하였다. 1949, 1982-1984, 1988-1997, 1995-2002년도에 분리된 뉴캣슬병 바이러스 한국분리주 들은 각각 유전자형 III, V, VI, VII형에 속하는 것으로 나타났다. 이와 같은 결과는 다섯번의 한국 뉴캣슬병 유행기에 분리된 바이러스의 유전자형이 시대순으로 차례대로 III, V, VI, VII형으로 교체되어 왔음을 의미한다. 계통발생학적 분석 결과, 뉴캣슬병 바이러스 한국분리주중 V유전자형에 속하는 바이러스는 1970년대의 유럽 유행주와 관련성이 있는 반면, 1988년 이후 분리된 VI과 VII 유전자형의 바이러스는 일본, 대만, 중국과 같은 극동아시아의 뉴캣슬병 발생과 관련성이 높은 것으로 나타났다. 따라서 최근에는 극동아시아 유래의 VI과 VII유전자형이 한국분리주의 주류를 이루고 있으며, 이는 극동아시아 국가들간의 축산물과 사람의 교역 및 교류의 증가 때문인 것으로 보인다.

• Toxicological Research
• /
• 제19권1호
• /
• pp.29-31
• /
• 2003

It has been reported that the genetic variations in the Y chromosome has influence the blood pressure in some Caucasian male populations, but the effect in non-Caucasian population is unclear. In the present study, we examined the relationship between blood pressure and a HindIII RFLP of Y chromosome in 152 unrelated male individuals of ethnically homogeneous Korean origin. There were no significant differences in systolic and diastolic blood pressures between genotype groups, respectively. However, the frequency of A genotype in Korean population was much higher than those of Caucasian populations (P＜0.05). Therefore, the results of this study will con-tribute the better understanding the genetic characteristics of Y chromosome in Korean population.

• Asian-Australasian Journal of Animal Sciences
• /
• 제19권3호
• /
• pp.324-328
• /
• 2006

Carbonic anhydrase III (CA3) is a member of a multigene family that encode carbonic anhydrase isozymes. In this study, a complete coding sequence of the pig CA3 gene which encodes a 260 amino-acid protein was determined. The amino acid comparison showed high sequence similarities with previously identified human (86.5%) CA3 gene and mouse (91.5%) Car3 gene. The partial genomic DNA sequences were also investigated. The length of intron 1 was 727 bp. Comparative sequencing of three pig breeds revealed that there was a T${\rightarrow}$C substitution at position 363 within intron 1. The substitution was situated within a NcoI recognition site and was developed as a PCR-restriction fragment length polymorphism (RFLP) marker for further use in population variation investigations and association analysis. Two alleles (A and B) were identified, and 617 bp fragments were observed for the AA genotype and 236 bp and 381 bp fragments for the BB genotype. The polymorphism of CA3 was detected in 8 pig breeds. Allele B was predominant in the Western pig breeds. In addition, association studies of the CA3 polymorphism with carcass traits in 140 $Yorkshire{\times}Meishan$ $F_2$ offspring showed that the NcoI PCR- RFLP genotype may be associated with variation in several carcass traits of interest for pig breeding. Allele B was associated with increases in lean meat percentage, loin eye height and loin eye area. Statistically significant association with backfat thickness was also found; pigs with the AB genotype had much less backfat thickness than AA or BB genotypes.