• Title/Summary/Keyword: genetic test

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Random Regression Models Using Legendre Polynomials to Estimate Genetic Parameters for Test-day Milk Protein Yields in Iranian Holstein Dairy Cattle

  • Naserkheil, Masoumeh;Miraie-Ashtiani, Seyed Reza;Nejati-Javaremi, Ardeshir;Son, Jihyun;Lee, Deukhwan
    • Asian-Australasian Journal of Animal Sciences
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    • v.29 no.12
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    • pp.1682-1687
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    • 2016
  • The objective of this study was to estimate the genetic parameters of milk protein yields in Iranian Holstein dairy cattle. A total of 1,112,082 test-day milk protein yield records of 167,269 first lactation Holstein cows, calved from 1990 to 2010, were analyzed. Estimates of the variance components, heritability, and genetic correlations for milk protein yields were obtained using a random regression test-day model. Milking times, herd, age of recording, year, and month of recording were included as fixed effects in the model. Additive genetic and permanent environmental random effects for the lactation curve were taken into account by applying orthogonal Legendre polynomials of the fourth order in the model. The lowest and highest additive genetic variances were estimated at the beginning and end of lactation, respectively. Permanent environmental variance was higher at both extremes. Residual variance was lowest at the middle of the lactation and contrarily, heritability increased during this period. Maximum heritability was found during the 12th lactation stage ($0.213{\pm}0.007$). Genetic, permanent, and phenotypic correlations among test-days decreased as the interval between consecutive test-days increased. A relatively large data set was used in this study; therefore, the estimated (co)variance components for random regression coefficients could be used for national genetic evaluation of dairy cattle in Iran.

Vibration Ride Quality Optimization of a Suspension Seat System Using Genetic Algorithm (유전자 알고리즘을 이용한 SUSPENSION SEAT SYSTEM의 진동 승차감 최적화)

  • Park, S.K.;Choi, Y.H.;Choi, H.O.;Bae, B.T.
    • Proceedings of the KSME Conference
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    • 2001.06b
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    • pp.584-589
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    • 2001
  • This paper presents the dynamic parameter design optimization of a suspension seat system using the genetic algorithm. At first, an equivalent 1-D.O.F. mass-spring-damper model of a suspension seat system was constructed for the purpose of its vibration analysis. Vertical vibration response and transmissibility of the equivalent model due to base excitations, which are defined in the ISO's seat vibration test codes, were computed. Furthermore, seat vibration test, that is ISO's damping test, was carried out in order to investigate the validity of the equivalent suspension seat model. Both analytical and experimental results showed good agreement each other. For the design optimization, the acceleration transmissibility of the suspension seat model was adopted as an object function. A simple genetic algorithm was used to search the optimum values of the design variables, suspension stiffness and damping coefficient. Finally, vibration ride performance test results showed that the optimum suspension parameters gives the lowest vibration transmissibility. Accordingly the genetic algorithm and the equivalent suspension seat modelling can be successfully adopted in the vibration ride quality optimization of a suspension seat system.

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Automatic Test Data Generation for Mutation Testing Using Genetic Algorithms (유전자 알고리즘을 이용한 뮤테이션 테스팅의 테스트 데이터 자동 생성)

  • 정인상;창병모
    • The KIPS Transactions:PartD
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    • v.8D no.1
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    • pp.81-86
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    • 2001
  • one key goal of software testing is to generate a 'good' test data set, which is consideres as the most difficult and time-consuming task. This paper discusses how genetic algorithns can be used for automatic generation of test data set for software testing. We employ mutation testing to show the effectiveness of genetic algorithms (GAs) in automatic test data generation. The approach presented in this paper is different from other in that test generation process requireas no lnowledge of implementation details of a program under test. In addition, we have conducted some experiments and compared our approach with random testing which is also regarded as a black-box test generation technique to show its effectiveness.

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Gene selection method using neural networks and genetic algorithm and its applications to classification of cancers (신경회로망과 유전 알고리즘을 이용한 유전자 추출법과 이의 암 분류법에의 적용)

  • Cho, Hyun-Sung;Kim, Tae-Seon;Jeon, Sung-Mo;Wee, Jae-Woo;Lee, Chong-Ho
    • Proceedings of the KIEE Conference
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    • 2002.07d
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    • pp.2815-2817
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    • 2002
  • Classification method of cancers using cDNA microarrays data was developed using genetic algorithms and neural networks. For gene selection, 2308 genes were ranked using genetic algorithms, and selected by frequency number of selection from 1000 of genetic iterative runs. To calculate fitness values, artificial neural networks are used as classifier. The small, round blue cell tumors (SRBCTs) which is difficult to distinguish via pathological single test was used as test diseases for classification, and the test results showed the 96% of exact classification capability for 25 test samples.

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Direct-to-consumer genetic testing

  • Kim, Jong-Won
    • Genomics & Informatics
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    • v.17 no.3
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    • pp.34.1-34.3
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    • 2019
  • Direct-to-consumer (DTC) genetic testing is a controversial issue although Korean Government is considering to expand DTC genetic testing. Preventing the exaggeration and abusing of DTC genetic testing is an important task considering the early history of DTC genetic testing in Korea. And the DTC genetic testing performance or method has been rarely reported to the scientific and/or medical community and reliability of DTC genetic testing needs to be assessed. Law enforcement needs to improve these issues. Also principle of transparency needs to be applied.

Genetic Evaluation of Somatic Cell Counts of Holstein Cattle in Zimbabwe

  • Mangwiro, F.K.;Mhlanga, F.N.;Dzama, K.;Makuza, S.M.
    • Asian-Australasian Journal of Animal Sciences
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    • v.13 no.10
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    • pp.1347-1352
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    • 2000
  • The objectives of the study were to examine non-genetic factors that influence somatic cell counts in dairy cattle and to estimate the genetic parameters of somatic cell counts. A total of 34, 097-test day somatic cell count records were obtained from the Zimbabwe Dairy Services Association (ZDSA). The data were from 5, 615 Holstein daughters of 390 sires and 2, 541 dams tested between May 1994 and December 1998. First lactation cows contributed 22, 147 records to the data set, while 11, 950 records were from second and later parity cows. The model for analysis included fixed effects of month of calving, year of calving, stage of lactation, calving interval and test date. Milk yield and age on test day were fitted in the model as covariates. The additive genetic effects pertaining to cows, sires and dams and the residual error were the random effects. The Average Information Restricted Maximum Likelihood algorithm was used for analysis. The heritability of somatic cell scores was low at $0.027{\pm}0.013$ for parity one cows and $0.087{\pm}0.031$ for parity two and above. Repeatability estimates were $0.22{\pm}0.01$ and $0.30{\pm}0.01$ for the two lactation groups, respectively. Genetic and phenotypic correlations between the somatic cell scores and test day milk production were small and negative. It seems that there is no genetic link between somatic cell counts and milk yield in Holstein cattle in Zimbabwe. The results also seem to indicate that somatic cell count is a trait that is mainly governed by environmental factors.

Test Set Generation for Pairwise Testing Using Genetic Algorithms

  • Sabharwal, Sangeeta;Aggarwal, Manuj
    • Journal of Information Processing Systems
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    • v.13 no.5
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    • pp.1089-1102
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    • 2017
  • In software systems, it has been observed that a fault is often caused by an interaction between a small number of input parameters. Even for moderately sized software systems, exhaustive testing is practically impossible to achieve. This is either due to time or cost constraints. Combinatorial (t-way) testing provides a technique to select a subset of exhaustive test cases covering all of the t-way interactions, without much of a loss to the fault detection capability. In this paper, an approach is proposed to generate 2-way (pairwise) test sets using genetic algorithms. The performance of the algorithm is improved by creating an initial solution using the overlap coefficient (a similarity matrix). Two mutation strategies have also been modified to improve their efficiency. Furthermore, the mutation operator is improved by using a combination of three mutation strategies. A comparative survey of the techniques to generate t-way test sets using genetic algorithms was also conducted. It has been shown experimentally that the proposed approach generates faster results by achieving higher percentage coverage in a fewer number of generations. Additionally, the size of the mixed covering arrays was reduced in one of the six benchmark problems examined.

Communication with Family Members about Positive BRCA1/2 Genetic Test Results in Korean Hereditary Breast Cancer Families (한국인 유전성 유방암 가계에서 BRCA1/2 유전자 돌연변이 사실에 대한 가족과의 의사소통 실태)

  • Kang, Eun-Young;Park, Sue-K.;Kim, Ku-Sang;Choi, Doo-Ho;Nam, Seok-Jin;Paik, Nam-Sun;Lee, Jong-Won;Lee, Min-Hyuk;Kim, Sung-Won
    • Journal of Genetic Medicine
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    • v.8 no.2
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    • pp.105-112
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    • 2011
  • Purpose: Sharing genetic information with family members is important for cancer awareness and prevention. The purpose of this study is to examine disclosure patterns of positive BRCA genetic test results to patients' relatives. Materials and Methods: A total of 106 probands who had positive BRCA genetic test results from the Korean Hereditary Breast Cancer Study participated in our study. Subjects were asked whether they had disclosed their genetic test results to first-, second-, and third-degree relatives. Univariate and multivariate analyses were used to identify factors associated with positive result sharing with close and distant relatives. Results: In total, 99 respondents (93.4%) informed at least one at-risk relative of the test result, and they all reported that they had disclosed their genetic test result to a first-degree relative. Communication of test results to other relatives occurred significantly less often, with only 31 of 99 subjects (31.3%) sharing their results with second- or third-degree relatives. In the results of univariate analyses, disclosure of genetic test results to more distant relatives was associated with marital status and months since post-test counseling. The reasons for communication were to provide information about the BRCArelated cancer risk and to recommend the genetic test. Conclusion: Most individuals with the BRCA mutation share their test results with first-degree family members; however, these results reach more distant relatives significantly less often. Therefore, it is necessary to encourage patients' communication with extended family members through systematic genetic counseling.

Protection of Human Genetic Information and Citizens Participation (인간 유전정보 보호와 시민참여)

  • Lee Young-Hee;Kim Myoung-Jin;Kim Byoung-Soo
    • Journal of Science and Technology Studies
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    • v.3 no.1 s.5
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    • pp.41-73
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    • 2003
  • Personal genetic information is information about a person's genetic characteristics, which may reveal important information about private matters such as susceptibility to disease. Progress in genetics makes it much easier to obtain personal genetic information, and this leads to concerns about confidentiality and security of genetic information, and about possible genetic discrimination. This paper examines social issues related to human genetic information in terms of individual identification, diagnosis of diseases, and non-medical genetic test, and then tries to provide desirable citizens participation methods that can be used when making public policies related to genetic information protection.

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Genetic Parameters of Milk β-Hydroxybutyric Acid and Acetone and Their Genetic Association with Milk Production Traits of Holstein Cattle

  • Lee, SeokHyun;Cho, KwangHyun;Park, MiNa;Choi, TaeJung;Kim, SiDong;Do, ChangHee
    • Asian-Australasian Journal of Animal Sciences
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    • v.29 no.11
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    • pp.1530-1540
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    • 2016
  • This study was conducted to estimate the genetic parameters of ${\beta}$-hydroxybutyrate (BHBA) and acetone concentration in milk by Fourier transform infrared spectroscopy along with test-day milk production traits including fat %, protein % and milk yield based on monthly samples of milk obtained as part of a routine milk recording program in Korea. Additionally, the feasibility of using such data in the official dairy cattle breeding system for selection of cows with low susceptibility of ketosis was evaluated. A total of 57,190 monthly test-day records for parities 1, 2, and 3 of 7,895 cows with pedigree information were collected from April 2012 to August 2014 from herds enrolled in the Korea Animal Improvement Association. Multi-trait random regression models were separately applied to estimate genetic parameters of test-day records for each parity. The model included fixed herd test-day effects, calving age and season effects, and random regressions for additive genetic and permanent environmental effects. Abundance of variation of acetone may provide a more sensitive indication of ketosis than many zero observations in concentration of milk BHBA. Heritabilities of milk BHBA levels ranged from 0.04 to 0.17 with a mean of 0.09 for the interval between 4 and 305 days in milk during three lactations. The average heritabilities for milk acetone concentration were 0.29, 0.29, and 0.22 for parities 1, 2, and 3, respectively. There was no clear genetic association of the concentration of two ketone bodies with three test-day milk production traits, even if some correlations among breeding values of the test-day records in this study were observed. These results suggest that genetic selection for low susceptibility of ketosis in early lactation is possible. Further, it is desirable for the breeding scheme of dairy cattle to include the records of milk acetone rather than the records of milk BHBA.