• 제목/요약/키워드: genetic similarity

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RAPD를 이용한 산느타리(Pleurotus pulmonarius) 수집균주 유연관계 분석 (Genetic relationship analysis of Pleurotus pulmonarius strains using RAPD)

  • 이재홍;이남길;문윤기;정태성;권순배;김재록;김진원
    • 한국버섯학회지
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    • 제13권1호
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    • pp.37-40
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    • 2015
  • RAPD를 이용한 유연관계 분석에서는 유사도 0.37을 기준으로 2번과 8번 계통을 제외하고 21개 품종은 두 개의 그룹으로 나누어졌다. 그룹 1에는 1, 4, 5, 6, 7, 13번 계통이 분포하고, 그룹 2에는 나머지가 분포하였다.

공동주택 프로젝트의 초기 공사비 예측정확도 향상에 관한 연구 (Improving the Accuracy of Early Stage Cost Estimation in Apartment Construction Project)

  • 임소연;여상구;고성석
    • 한국건축시공학회:학술대회논문집
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    • 한국건축시공학회 2010년도 춘계 학술논문 발표대회 1부
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    • pp.143-147
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    • 2010
  • Due to the diversification and complication of construction projects, controlling risks from the early design-planning phase gives huge impact on success of the construction project. As a part of managing uncertainties it is also important to estimate the project cost several times. Especially, estimating project cost in the early stage gives effects on making a budget for projects. This study estimated the apartment project cost using case-based reasoning(CBR), which is the process of solving new problems based on the past problems. For this, we deduced the apartment cost influence factors which can be gathered in the early stage of project. Based on the factors we established the database for apartment project and calculated the attribute value, attribute similarity and case similarity. Although we retrieve the most similar case from the database, it is very hard to utilize it directly due to the uniqueness of each project. So, Genetic Algorithm(GA) was applied in revising the cost of the retrieved-case. Therefore, the accuracy of the prediction was improved by GA optimization.

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Intraspecific variations of the Yam (Dioscorea alata L.) based on external morphology and DNA marker analysis

  • Chang, Kwang-Jin;Yoo, Ki-Oug;Park, Cheol-Ho;Lim, Hak-Tae;Michio Onjo;Park, Byoung-Jae
    • Plant Resources
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    • 제3권3호
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    • pp.211-218
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    • 2000
  • Intraspecific genetic relationship of 19 variation types of the Yam (Dioscorea alata) classified by their external morphological characteristics such as leaf and tuber shape were assessed by DNA using random and specific primer. Twenty two out of 113 primers (100 random[10-mer] primers, two 15 mer [M13 core sequence, and (GGAT)$_4$ sequence]) had been used in PCR-amplification. Only 12 primers, however, were success in DNA amplification in all of the analyzed plants, resulting in 93 randomly and specifically amplified DNA fragments. The analyzed taxa showed very high polymorphisms(69 bands, 71.0 %), allowing individual taxon to be identified based on DNA fingerprinting. Monomorphic bands among total amplified DNA bands of each primer was low under the 50%. Similarity indices between accessions were computed from PCR(polymerase chain reaction) data, and genetic relationships among intraspecific variations were closely related at the levels ranging from 0.66 to 0.90. These DNA data were not matched well with those of morphological characters since they were divided into two major groups at the similarity coefficient value of 0.70. Therefore, Grouping of species into variation types by mainly morphological charactistics was suggested unreasonable.

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Assessment of Genetic Variability in Two North Indian Buffalo Breeds Using Random Amplified Polymorphic DNA (RAPD) Markers

  • Sodhi, M.;Mukesh, M.;Anand, A.;Bhatia, S.;Mishra, B.P.
    • Asian-Australasian Journal of Animal Sciences
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    • 제19권9호
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    • pp.1234-1239
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    • 2006
  • Murrah and NiliRavi are the important North Indian buffalo breeds occupying the prominent position of being the highest milk producers. These breeds are more or less similar at morphological as well as physiological levels. The technique of RAPD-PCR was applied in the present study to identify a battery of suitable random primers to detect genetic polymorphism, elucidation of the genetic structure and rapid assessment of the differences in the genetic composition of these two breeds. A total of 50 random primers were screened in 24 animals each of Murrah and NiliRavi buffaloes to generate RAPD patterns. Of these, 26 (52%) primers amplified the buffalo genome generating 263 reproducible bands. The number of polymorphic bands for the 26 chosen RAPD primers varied from 3 (OPG 06 and B4) to 26 (OPJ 04) with an average of 10.1 bands per primer and size range of 0.2 to 3.2 kb. DNA was also pooled and analyzed to search for population specific markers. Two breed specific RAPD alleles were observed in each of Murrah (OPA02 and OPG16) and NiliRavi (OPG09) DNA pools. RAPD profiles revealed that 11 (4.2%) bands were common to all the 48 individuals of Murrah and NiliRavi buffaloes. Pair-wise band sharing calculated among the individual animals indicated considerable homogeneity of individuals within the breeds. Within breed, band sharing values were relatively greater than those of interbreed values. The low genetic distance (Nei's) value (0.109) estimated in this study is in accordance with the origin and geographical distribution of these breeds. The RAPD analysis indicated high level of genetic similarity between these two important North Indian buffalo breeds.

유전알고리즘 활용한 실시간 패턴 트레이딩 시스템 프레임워크 (Conceptual Framework for Pattern-Based Real-Time Trading System using Genetic Algorithm)

  • 이석준;정석재
    • 산업경영시스템학회지
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    • 제36권4호
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    • pp.123-129
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    • 2013
  • The aim of this study is to design an intelligent pattern-based real-time trading system (PRTS) using rough set analysis of technical indicators, dynamic time warping (DTW), and genetic algorithm in stock futures market. Rough set is well known as a data-mining tool for extracting trading rules from huge data sets such as real-time data sets, and a technical indicator is used for the construction of the data sets. To measure similarity of patterns, DTW is used over a given period. Through an empirical study, we identify the ideal performances that were profitable in various market conditions.

도산예측을 위한 유전 알고리듬 기반 이진분류기법의 개발 (A GA-based Binary Classification Method for Bankruptcy Prediction)

  • 민재형;정철우
    • 한국경영과학회지
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    • 제33권2호
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    • pp.1-16
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    • 2008
  • The purpose of this paper is to propose a new binary classification method for predicting corporate failure based on genetic algorithm, and to validate its prediction power through empirical analysis. Establishing virtual companies representing bankrupt companies and non-bankrupt ones respectively, the proposed method measures the similarity between the virtual companies and the subject for prediction, and classifies the subject into either bankrupt or non-bankrupt one. The values of the classification variables of the virtual companies and the weights of the variables are determined by the proper model to maximize the hit ratio of training data set using genetic algorithm. In order to test the validity of the proposed method, we compare its prediction accuracy with ones of other existing methods such as multi-discriminant analysis, logistic regression, decision tree, and artificial neural network, and it is shown that the binary classification method we propose in this paper can serve as a premising alternative to the existing methods for bankruptcy prediction.

Parallel Genetic Algorithm based on a Multiprocessor System FIN and Its Application to a Classifier Machine

  • 한명묵
    • 한국지능시스템학회논문지
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    • 제8권5호
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    • pp.61-71
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    • 1998
  • Genetic Algorithm(GA) is a method of approaching optimization problems by modeling and simulating the biological evolution. GA needs large time-consuming, so ti had better do on a parallel computer architecture. Our proposed system has a VLSI-oriented interconnection network, which is constructed from a viewpoint of fractal geometry, so that self-similarity is considered in its configuration. The approach to Parallel Genetic Algorithm(PGA) on our proposed system is explained, and then, we construct the classifier system such that the set of samples is classified into weveral classes based on the features of each sample. In the process of designing the classifier system, We have applied PGA to the Traveling Salesman Problem and classified the sample set in the Euclidean space into several categories with a measure of the distance.

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Genetic Relationships among Multiple Strains of the Genus Tetraselmis Based on Partial 18S rDNA Sequences

  • Lee, Hye-Jung;Hur, Sung-Bum
    • ALGAE
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    • 제24권4호
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    • pp.205-212
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    • 2009
  • Molecular genetic tools are widely used to learn more about the identical characterization of obscure microalgal strains. At the Korea Marine Microalgae Culture Center (KMMCC), the authors deduced the genetic relationship of 41 strains of the genus Tetraselmis by analysing a small subunit ribosomal DNA (18S rDNA) sequences. Forty-one strains were seperated into five groups, which showed over a 98-99% similarity to Tetraselmis striata or Tetraselmis sp. Tsbre. Also, 13 strains among them had an identical genotype to Tetraselmis striata while 5 strains had with Tetraselmis sp. Tsbre, respectively. The mean size of each strain generally showed the tendency of different variation according to the groups.

Evaluation of Genetic Diversity among Korean Wild Codonopsis lanceolata by Using RAPD

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    • 한국자원식물학회지
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    • 제10권3호
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    • pp.258-264
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    • 1997
  • The introduction of molecular biology methodologies to plant improvement programs offers an invaluable opportunity for extensive germplasm characterization. We have applied the developed technique of random amplification of polymorphic DNA(RAPD)to the analysis of evaluating genetic diversity among Korean wild Codonopsis lanceolata. A total of 340 polymorpic hands were gernerated on agarose- and polyacrylamide-gel by 19 primers of abitrary sequence. grouped by cluster analysis using sample matching coefficients of similarity. Among of the samples. the minimum genetic distance value was obtained between sample no. 1(Girisan) and no. 2(Girisan), and the largest value between sample no. 11(Sulaksan) and no. 17(Sulaksan).In separate cluster dendrograms based on agareose - and polyacryamide-gel. some differences were observed; In the case of agarose gel,41 samples could be devided into 7 groups at below about 0.44 level of distance. However they were divided into 6 gourps at below about 0.40 level of distance in the case of polyacrylamide gel. These results showed that polymophic data in agrose were not grouped to wild plant selected from each mountainous district except for wild plants selected from Sulaksan and Chiaksan. We believe that polyacrylamide-RAPD is a superior method for detecting DNA polymorphism compared to agarose-RAPD method.

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Estimation of Genetic Variation of Korean Isolates of Phytophthora capsici by Using Molecular Markers

  • Chee, Hee-Youn;Jee, Hyeong-Jin
    • Mycobiology
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    • 제29권1호
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    • pp.43-47
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    • 2001
  • Genetic diversity of 21 Korean Phytophthora capsici isolates was analyzed by using several molecular markers such as random amplified polymorphic DNA(RAPD), M-13, microsatellite and random amplified microsatellite sequences(RAMS). The overall average similarity coefficient among the isolates was 86% based on the combined data obtained by the molecular markers. No molecular markers were found to be associated with hosts or geographic regions. In addition to RAPD, analysis based on repeated sequences such as $(GTG)_5$, M-13 and RAMS could be used to assess population structure of P. capsici.

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