• 제목/요약/키워드: genetic gain

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Evaluation of selection program by assessing the genetic diversity and inbreeding effects on Nellore sheep growth through pedigree analysis

  • Illa, Satish Kumar;Gollamoori, Gangaraju;Nath, Sapna
    • Asian-Australasian Journal of Animal Sciences
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    • 제33권9호
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    • pp.1369-1377
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    • 2020
  • Objective: The main objectives of the present study were to assess the genetic diversity, population structure and to appraise the efficiency of ongoing selective breeding program in the closed nucleus herd of Nellore sheep through pedigree analysis. Methods: Information utilized in the study was collected from the pedigree records of Livestock Research Station, Palamaner during the period from 1989 to 2016. Genealogical parameters like generation interval, pedigree completeness, inbreeding level, average relatedness among the animals and genetic conservation index were estimated based on gene origin probabilities. Lambs born during 2012 and 2016 were considered as reference population. Two animal models either with the use of Fi or ΔFi as linear co-variables were evaluated to know the effects of inbreeding on the growth traits of Nellore sheep. Results: Average generation interval and realized effective population size for the reference cohort were estimated as 3.38±0.10 and 91.56±1.58, respectively and the average inbreeding coefficient for reference population was 3.32%. Similarly, the effective number of founders, ancestors and founder genome equivalent of the reference population were observed as 47, 37, and 22.48, respectively. Fifty per cent of the genetic variability was explained by 14 influential ancestors in the reference cohort. The ratio fe/fa obtained in the study was 1.21, which is an indicator of bottlenecks in the population. The number of equivalent generations obtained in the study was 4.23 and this estimate suggested the fair depth of the pedigree. Conclusion: Study suggested that the population had decent levels of genetic diversity and a non-significant influence of inbreeding coefficient on growth traits of Nellore lambs. However, small portion of genetic diversity was lost due to a disproportionate contribution of founders and bottlenecks. Hence, breeding strategies which improve the genetic gain, widens the selection process and with optimum levels of inbreeding are recommended for the herd.

FACTORS INFLUENCING FEED EFFICIENCY AND BACKFAT THICKNESS IN STATION TESTED BEEF BULLS

  • Liu, M.F.;Makarechian, M.;Price, M.A.;Huedepohl, C.
    • Asian-Australasian Journal of Animal Sciences
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    • 제8권5호
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    • pp.495-498
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    • 1995
  • Records taken on 372 young beef bulls tested at the Ellerslie Bull Test Station, Alberta, Canada from November 1981 to April 1987 were analyzed to quantify the effects of age of dam, on-test age, on-test liveweight and herd of origin of bull on feed efficiency (feed/gain, kg/kg) in the test period (n = 231) and ultrasonic measurement of bakcfat thickness (mm) at the end of the test (n = 372). The reduction in $R^2$ due to each influencing factor (i.e. the variation accounted for by the factor) was used to indicate the importance of the influencing factor. Age of dam and on-test age of bull were not important factors on feed/gain and ultrasonic backfat thickness, as they accounted for less than 0.5% of the variation in feed/gain and ultrasonic backfat thickness, respectively (p > 0.1). On-test liveweight had some influence on feed/gain and ultrasonic backfat thickness, accounting for 3.5% (p < 0.01) and 0.4% (p < 0.05) of the total variation, respectively. The regression coefficients of feed/gain and ultrasonic backfat thickness on on-test liveweight were 0.016 (kg/kg)/kg and .013 mm/kg, respectively, both being significant (p < 0.05), indicating that lighter bulls entering the test were generally more efficient in feed utilization in the test period and had less backfat at the end of the test than heavier entering bulls. Herd of origin of bull accounted for a substantial amount of the total variation (> 16%) in feed/gain and ultrasonic backfat thickness (p = 0.08), indicating that a prolonged aqjustment period was needed to reduce the influence of herd of origin when assessing aggregate genetic merit of beef bulls for growth rate, feed efficiency and lean meat production using a central station performance testing program.

The Similarities and Differences between Intracranial and Spinal Ependymomas : A Review from a Genetic Research Perspective

  • Lee, Chang-Hyun;Chung, Chun Kee;Ohn, Jung Hun;Kim, Chi Heon
    • Journal of Korean Neurosurgical Society
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    • 제59권2호
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    • pp.83-90
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    • 2016
  • Ependymomas occur in both the brain and spine. The prognosis of these tumors sometimes differs for different locations. The genetic landscape of ependymoma is very heterogeneous despite the similarity of histopathologic findings. In this review, we describe the genetic differences between spinal ependymomas and their intracranial counterparts to better understand their prognosis. From the literature review, many studies have reported that spinal cord ependymoma might be associated with NF2 mutation, NEFL overexpression, Merlin loss, and 9q gain. In myxopapillary ependymoma, NEFL and HOXB13 overexpression were reported to be associated. Prior studies have identified HIC-1 methylation, 4.1B deletion, and 4.1R loss as common features in intracranial ependymoma. Supratentorial ependymoma is usually characterized by NOTCH-1 mutation and p75 expression. TNC mutation, no hypermethylation of RASSF1A, and GFAP/NeuN expression may be diagnostic clues of posterior fossa ependymoma. Although MEN1, TP53, and PTEN mutations are rarely reported in ependymoma, they may be related to a poor prognosis, such as recurrence or metastasis. Spinal ependymoma has been found to be quite different from intracranial ependymoma in genetic studies, and the favorable prognosis in spinal ependymoma may be the result of the genetic differences. A more detailed understanding of these various genetic aberrations may enable the identification of more specific prognostic markers as well as the development of customized targeted therapies.

Genetic parameters for residual feed intake in a random population of Pekin duck

  • Zhang, Yunsheng;Guo, Zhan Bao;Xie, Ming;Zhang, Zhiying;Hou, Shuisheng
    • Asian-Australasian Journal of Animal Sciences
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    • 제30권2호
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    • pp.167-170
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    • 2017
  • Objective: The feed intake (FI) and feed efficiency are economically important traits in ducks. To obtain insight into this economically important trait, we designed an experiment based on the residual feed intake (RFI) and feed conversion ratio (FCR) of a random population Pekin duck. Methods: Two thousand and twenty pedigreed random population Pekin ducks were established from 90 males mated to 450 females in two hatches. Traits analyzed in the study were body weight at the 42th day (BW42), 15 to 42 days average daily gain (ADG), 15 to 42 days FI, 15 to 42 days FCR, and 15 to 42 days RFI to assess their genetic interrelationships. The genetic parameters for feed efficiency traits were estimated using restricted maximum likelihood (REML) methodology applied to a sire-dam model for all traits using the ASREML software. Results: Estimates heritability of BW42, ADG, FI, FCR, and RFI were 0.39, 0.38, 0.33, 0.38, and 0.41, respectively. The genetic correlation was high between RFI and FI (0.77) and moderate between RFI and FCR (0.54). The genetic correlation was high and moderate between FCR and ADG (-0.80), and between FCR and BW42 (-0.64), and between FCR and FI (0.49), respectively. Conclusion: Thus, selection on RFI was expected to improve feed efficiency, and reduce FI. Selection on RFI thus improves the feed efficiency of animals without impairing their FI and increase growth rate.

Comparative genomic hybridization analysis of fetal chromosomal aberrations

  • Choi, Soo-Kyung;Kim, Young-Mi;Park, So-Yeon;Kim, Jin-Woo;Ryu, Hyun-Mee;Go, Chang-Won;Park, Chong-Tak;Jun, Jung-Young;Park, In-Suh
    • Journal of Genetic Medicine
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    • 제2권2호
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    • pp.71-77
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    • 1998
  • Comparative genomic hybridization (CGH) can now be applied to detect the origin of extra or missing chromosomal material in cases with common unbalanced aberrations and in prenatal investigations. This method has been used in 13 cases of fetal samples for this study; 3 for amniocytes, 2 for cord blood and 8 for abortus tissues. These samples were previously subjected to GTG-banding. Our study showed aneuploidy in 8 cases, and partial monosomy, partial trisomy or marker chromosome in the remaining 5. The CGH disclosed further small genetic imbalances in 4 of all 13 cases: a prenatal sample showing del(20)(q13) by GTG confirmed a loss of the segment 20p13-pter by CGH; a marker chromosome manifested normal CGH profile; chromosome der(?)(?;15) found in an abortus sample by GTG turned out to be a loss of 15pter-q14 (partial monosomy) and a gain of 10pter-q22 (partial trisomy); the der(15) shown by GTG represented partial trisomy of 3q24-qter. These findings show that CGH is very useful and efficient for cytogenetic investigations of clinical cases.

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유전자 알고리즘을 이용한 Satellite Digital Audio Radio System Antennas 개발 (Design of a low-profile antenna for Satellite Digital Audio Radio Systems(SDARS))

  • 김용진;김상욱;김진환;이용근;김영봉
    • 대한전기학회:학술대회논문집
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    • 대한전기학회 2007년도 학술대회 논문집 전문대학교육위원
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    • pp.179-182
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    • 2007
  • The Design and Optimization of a low-profile antenna for the Satellite Digital Audio Radio System(SDARS) using a Non-Dominated Sorting Genetic Algorithm(NSGA) is presented. a fairly omni-directional elevation gain pattern over 60 degrees < q <60 degrees are obtained. The average value of the LCP gain pattern is approximately 2 dBic. The heights of the antennas are less than 0.251. The cross polarized signal level is approximately 12 dBic less than the co-polarized signal level.

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Heterogeneity of Variance by Sex in Postweaning Gain of Angus Calves under Different Environment Levels

  • Oikawa, T.;Hammond, K.;Tier, B.
    • Asian-Australasian Journal of Animal Sciences
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    • 제12권6호
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    • pp.846-849
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    • 1999
  • Angus postweaning daily gain (PWDG) were analyzed to investigate heterogeneous variance by sex. A set of data (16,239 records) was divided into six sub-data sets according to level of environment. REML estimation was conducted by a multitrait model, where PWDG in each sex was treated as a separate trait. Estimates showed diversity among environmental levels, where the heritability for heifers was high in good environment but low in poor environment. The bull's estimates varied among environmental levels. The largest heterogeneity of phenotypic variance between sexes was estimated in a data set of the poor environment level. The genetic correlations between the heifer's PWDG and the bull's PWDG were high in the good environment and low in the poor environment (-0.17). The results suggest existence of genotype by sex interaction in the poor environment.

GA를 이용한 강인한 성능을 가지는 PD 제어기의 설계에 관한 연구 (A Study of Design on PD Controller Having Robust Performance Using GA)

  • 김동완;손무헌;황현준;박진현;윤영대;도대호;최종헌
    • 대한전기학회:학술대회논문집
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    • 대한전기학회 1998년도 하계학술대회 논문집 B
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    • pp.795-797
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    • 1998
  • This paper suggests a design method of the optimal PD control system having robust performance. This PD control system is designed by applying genetic algorithm(GA) with reference model to the optimal determination of proportional(P) gain and derivative(D) gain that are given by PD servo controller. These proportional and derivative gains are simultaneously optimized in the search domain guaranteeing the robust performance of closed-loop system. This PD control system is applied to the fuel-injection control system of diesel engine and compared with ${\mu}$ -synthesis control system for robust performance. The effectiveness of this PD control system is verified by computer simulation.

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Multiobjective PI Controller Tuning of Multivariable Boiler Control System Using Immune Algorithm

  • Kim, Dong-Hwa;Park, Jin-Ill
    • International Journal of Fuzzy Logic and Intelligent Systems
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    • 제3권1호
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    • pp.78-86
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    • 2003
  • Multivariable control system exist widely in many types of systems such as chemical processes, biomedical processes, and the main steam temperature control system of the thermal power plant. Up to the present time, Pill Controllers have been used to operate these systems. However, it is very difficult to achieve an optimal PID gain with no experience, because of the interaction between loops and gain of the Pill controller has to be manually tuned by trial and error. This paper suggests a tuning method of the Pill Controller for the multivariable power plant using an immune algorithm, through computer simulation. Tuning results by immune algorithms based neural network are compared with the results of genetic algorithm.

Multi-Stage CMOS OTA Frequency Compensation: Genetic algorithm approach

  • Mohammad Ali Bandari;Mohammad Bagher Tavakoli;Farbod Setoudeh;Massoud Dousti
    • ETRI Journal
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    • 제45권4호
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    • pp.690-703
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    • 2023
  • Multistage amplifiers have become appropriate choices for high-speed electronics and data conversion. Because of the large number of high-impedance nodes, frequency compensation has become the biggest challenge in the design of multistage amplifiers. The new compensation technique in this study uses two differential stages to organize feedforward and feedback paths. Five Miller loops and a 500-pF load capacitor are driven by just two tiny compensating capacitors, each with a capacitance of less than 10 pF. The symbolic transfer function is calculated to estimate the circuit dynamics and HSPICE and TSMC 0.18 ㎛. CMOS technology is used to simulate the proposed five-stage amplifier. A straightforward iterative approach is also used to optimize the circuit parameters given a known cost function. According to simulation and mathematical results, the proposed structure has a DC gain of 190 dB, a gain bandwidth product of 15 MHz, a phase margin of 89°, and a power dissipation of 590 ㎼.