• 제목/요약/키워드: genetic characterization

검색결과 779건 처리시간 0.025초

Thermus aquaticus YT-1의 내열성 프로테아제 aqualysin I의 구조와 특징 (Characterization of aqualysin I structure(a thermophilic alkaline Serine protease) of Thermus aquaticus YT-1)

  • 권석태
    • Applied Biological Chemistry
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    • 제31권3호
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    • pp.274-283
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    • 1988
  • Aqualysin I is an alkaline serine protease which is secretet into the culture medium by Thermus aquaticus YT-1, an extreme thermophile. Aqualysin I was purified, and its partial amino acid sequence was determined. The gene encoding aqualysin I was cloned into E. coli using synthetic oligodeoxyribonucleotides as hybridization probes. The nucleotide sequence of the cloned DNA was determined. The primary structure of aqualysin I, deduced from the nucleotide sequenc, agreed with the determid amino acid sequences, including the $NH_2-$ and COOH terminal sequence of the tryptides derived from aqualysin I. Aqualysin I comprised 281 amino acid residues and its molecular mass was determined to be 28350. On alignment of the whole amino acid sequence, aqualysin I showed high sequence homology with the subtilisin type serine protease, and 43% identity with proteinase K, 37-30% with subtilisins and 34% with thermitase. Extremely high sequence identity was observed in the regions containing the active-site residues, corresponding to Asp32, His64 and Ser221 of subtilisin BPN'. Aqualysin I contains two disulfide bonds, Cys67-Cys99 and Cys163-Cys194, and these disulfide bonds seem to contribute to the heat stability of the enzyme. The determined positions of the twe disulfide bonds of aqualysin I agreed with those predicted previously on the basis of computer graphics of the crystallographic data for subtilisin BPN'. Therefore, these findings sugests that the three-dimensional structure of aqualysin I is similar to that of subtilisin BPN' Aqualysin I is produced as a lage precursor, which contains $NH_2-$ and COOH- terminal portions besides the mature protease sequence.

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Comparative Study on Various Growth Performances of Korean Oge and White Leghorn Chickens

  • Kang, Kyung-Soo;Jang, Hyun-Jun;Lee, Hyung-Chul;Kim, Sung-Kyu;Kim, Jae-Hwan;Choi, Seong-Bok;Rengaraj, Deivendran;Han, Jae-Yong
    • 한국가금학회지
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    • 제39권2호
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    • pp.105-112
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    • 2012
  • Genetic resource conservation of indigenous species is important to conserve terrestrial, aquatic and avian species throughout the world. The native Korean Oge (KO) chickens are important and protected indigenous avian species in Korea. This KO breed is very popular in Korea because of its external appearances of blackish color. The characterization of morphology and growth performances of KO were performed since 1980s, however the information is still not sufficient for breed selection. In this study, we compared various growth performances including body growth, tibia length, shank length, chest width, chest grith and length of tail feather between male and female chickens of KO and widely known White Leghorn (WL) breeds at 1 week, 2 weeks, 5 weeks, 10 weeks, and 24 weeks. We observed differences on various growth performances at different aged groups between KO and WL chickens. This study may help for the selection of chicken breeds based on age, body growth and meat production.

Isolation and functional characterization of BrUGT gene encoding a UDP-glycosyltransferase from Chinese cabbage (Brassica rapa)

  • Jung, Yu-Jin;Lee, Hye-Jung;Choi, Jang-Sun;Cho, Yong-Gu;Nou, Ill-Sup;Kang, Kwon-Kyoo
    • Journal of Plant Biotechnology
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    • 제39권3호
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    • pp.212-218
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    • 2012
  • Glycosyltransferases are enzymes (EC 2.4) that catalyze the transfer of monosaccharide moieties from activated nucleotide sugar to a glycosyl acceptor molecule which can be a carbohydrate, glycoside, oligosaccharide, or a polysaccharide. In this study, a UDP-glucosyltransferase cDNA was isolated from Brassica rapa using a rapid amplification of cDNA ends (RACE) and subsequently named BrUGT. It has a full-length cDNA of 1,236 bp with 119 bp 5'-untranslated region (UTR), a complete ORF of 834 bp encoding a polypeptide of 277 amino acids (31.19 kDa) and a 3'-UTR of 283 bp. BLASTX analysis hits a catalytic domain of Glycos_transf_1 super family (cl12012) that belongs to the Glycosyltransferases group 1 with tetratricopeptide (TPR) regions located between 165 to 350 bp. Expression analysis showed high mRNA transcripts in pistil, followed by petal, seed and calyx of flower. Moreover, expression analysis of BrUGT in Chinese cabbage seedlings under stresses of cold, salt, PEG, $H_2O_2$, drought and ABA showed elevated mRNA transcript. Furthermore, when BrUGT gene was transformed into rice using pUbi-1 promoter, overexpression was evident among the $T_1$ plants. This study provides insights into the function of BrUGT in plants.

축산업 분야에서의 박테리오신의 산업적 이용 및 향후 전망 (Perspectives for the Industrial Use of Bacteriocin in Dairy and Meat Industry)

  • 이나경;이주연;곽형근;백현동
    • 한국축산식품학회지
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    • 제28권1호
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    • pp.1-8
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    • 2008
  • 최근까지 박테리오신 생산균주의 분리, 분자생물학적 메커니즘, 정제, 구조 및 작용기작, 산업적인 적용 등의 논문 등이 보고되고 있다. 또한 50개국 이상에서 치즈, 통조림식품 등에서 식품보존제로서 승인되어 있다. 박테리오신의 여러 장점으로 인해 현재 추진되고 있는 축산업 분야의 HACCP의 범위인, 사육장에서부터 식품제조에 이르기까지 항생물질, 인공적인 방부제나 식품첨가물이 적게 들어가거나 첨가되지 않은 자연식품을 선호하고 있는 실정에 적합하다. 향후 축산업에서 항생제 대체방안의 하나로서 박테리오신의 사용은 확대되리라 기대된다. 경제적인 가격 경쟁력을 갖기 위해, 대량생산에 대한 연구가 이루어져야 하며, 적절한 제형으로 보다 구체적인 적용실험이 수행되어 산업화를 앞당겨야 한다.

Chemical Composition of Seed in Medicinal Soybean Collected in Korea

  • Seong, Rak-Chun;Kim, Jeong-Gyu;Hwang, Young-Hyun
    • 한국작물학회지
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    • 제43권3호
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    • pp.141-146
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    • 1998
  • Production of medicinal soybean [Glycine max (L.) Merrill], characterized with black seed, white stripe at hilum border, yellow cotyledon and small seed, is increasing with increasing consumption. The objective of this study was to investigate the chemical composition of medicinal soybean seed and to provide basic information, for the characterization of these soybeans among genetic resources. Forty-four lines of medicinal soybeans collected from Korea and two control cultivars, 'Hwangkeumkong' (Yellow seed coat) and 'Geomjeongkong l' (Black seed coat) were planted at the Research Farm of the College of Natural Resources, Korea University, located at Namyangju City on May 25, 1996. Seeds of these lines were harvested at full maturity and analyzed for protein, oil, sugar, starch and mineral contents. Mean protein and oil content of the medicinal line seeds were 42.6 and 16.1%, respectively, and those of the control cultivars were in the middle range for protein and oil content. However, sugar and starch content of the medicinal line seeds appeared to be in the lower range of the distributions compared to the control cultivars and were 10.0 and 1.68%, respectively. Mean P, K, Ca, and Mg contents of the seeds of medicinal soybean lines were 15.9, 21.5, 3.11, and 2.81 mg/g, respectively, indicating that these lines had higher P, K, and Mg and lower Ca contents when compared to the control cultivars. Mean Na and Fe contents were 671 and 224 mg/kg, respectively, showing lower Na and similar Fe contents. The observed results provided that chemical compositions of medicinal soybean were, on average, different from those of the general soybean cultivars.

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Isolation of Amylolytic Bifidobacterium sp. Int-57 and Characterization of Amylase

  • Ji, Geun-Eog;Han, Hee-Kyung;Yun, Seong-Wook
    • Journal of Microbiology and Biotechnology
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    • 제2권2호
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    • pp.85-91
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    • 1992
  • The intestinal microflora of humans is an extraordinarily complex mixture of microorganisms, the majority of which are anaerobic microorganisms. The distribution of amylolytic microorganisms in the human large intestinal tract was investigated in various individuals of differing ages using anaerobic culture techniques. A large percentage of the amylolytic microorganisms present belonged to the Genus Bifidobacteria. The number of Bifidobacteria increased significantly at two years of age. Adults and children above 2 years old carried about $0.8{\times}10^9-2.0{\times}10^{10}$ colony forming units (CFU/gram) of amylolytic Bifidobacteria. Among these amylolytic Bifidobacteria, Int-57 was chosen for further studies. Between 65% and 85% of the amylase produced was secreted and the remaining amylase was bound to the cell wall facing the outside. Amylase production could be induced by starch in a stable form. When cells were grown on maltose or glucose, amylase production was much lower than on starch and amylase activity disappeared after 24 hours growth on these media. Partially purified enzymes showed optimum activity at a temperature of $50^{\circ}C$ and at an optimum pH of 5.5, respectively. Heat treatment at $70^{\circ}C$ for 30 minutes almost completely inactivated amylase. The hydrolysis products of starch were mainly maltose and maltotriose. Soluble starch, amylose, amylopectin, and $\gamma$-cyclodextrin($\gamma$-CD) were easily hydrolyzed. The rate of hydrolysis of $\alpha$-CD and $\beta$-CD was slower than that of $\gamma$-CD. Carboxymethyl cellulose, $\beta$-1, 3-glucan and inulin were not hydrolyzed.

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Drosophila single P[en-lacZ] element mutagenesis를 이용한 발생 관련 돌연변이체 작성 (Screening and Characterization of Drosophila Development Mutants Using Single P[en-lacZ] Element Mutagenesis)

  • 하혜영;이희정;박순희;유미애;이원호
    • 생명과학회지
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    • 제7권1호
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    • pp.49-58
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    • 1997
  • Engralied 5.7kb upstream sequence와 E. colilacZ의 융합 유전자를 가진 P[en-lacZ] 인자를 jumpstart 기법을 이용하여, ryXho25 strain의 초파리 48A 염색체 위치로부터 새로운 위치로 삽입하였다. 총 3315의 유전적 교배를 통해서, P[en-lacZ] 가 다른 염색체 상으로 삽인된 113 계통을 얻었다. X-gal 염색으로 이들 113 계통의 3령기 유충 조직에서의 $\beta$-galactosidase 발현을 조사하였다. 도한 113 계통 중 7계통이 열성치사돌연변이인 것으로 동정되었다. 이들 7 계통 중 초기 배발생 과정에서 치사하는 것으로 조사된 #1119의 초기 배발생 과정에서의 ${\beta}$-galactosidase 발현과 핵의 이동 및 세포화 양상을 조사하였다. 본 연구에서 얻어진 P[en-lacZ] 삽입 돌연변이체들은 앞으로 Drosophila 발생에 관련된 유전자들의 구조와 기능을 연구하는데 활용될 수 있을 것이다.

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빅벨리해마(Hippocampus abdominalis) 글루코코르티코이드 수용체의 분자 유전학적 동정과 발현 분석 (Molecular Genetic Characterization and Analysis of Glucocorticoid Receptor Expression in the Big-belly Seahorse Hippocampus abdominalis)

  • 조은영;오민영;이숙경;완창;이제희
    • 한국수산과학회지
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    • 제48권3호
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    • pp.346-353
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    • 2015
  • Glucocorticoids (GCs) are steroid hormones regulated through responses to stress to maintain diverse metabolic and homeostatic functions. GCs act on the glucocorticoid receptor (GR), a member of the nuclear receptor family. This study identified and characterized the GR gene from the big-belly seahorse Hippocampus abdominalis designating it HaGR. The open reading frame of the HaGR cDNA was 2,346 bp in length, encoding a 782-amino-acid polypeptide with a theoretical isoelectric point of 6.26 and predicted molecular mass of 86.8 kDa. Nuclear receptors share a common structural organization, comprising an N-terminal transactivation domain, DNA-binding domain, and C-terminal ligand-binding domain. The tissue-specific mRNA expression profile of HaGR was analyzed in healthy seahorses using a qPCR technique. HaGR mRNA was expressed ubiquitously in all of the tissues examined, with the highest expression levels in kidney, intestine, stomach, and gill tissues. The mRNA expression in response to immune challenge with lipopolysaccharide (LPS), polyinosinic:polycytidylic acid (poly I:C), Edwardsiella tarda, and Streptococcus iniae revealed that it is inducible in response to pathogen infection. These results suggest that HaGR is involved in the immune response of the big-belly seahorse.

Amylase 분비효모와 alcohol 발효효모의 세포융합에 의한 균주의 개발 제1보. S. cerevisiae와 S. diastaticus간의 세포융합 및 융합체의 성질 (A study on strain improvement by protoplast fusion between amylase secreting yeast and alcohol fermenting yeast I. Isolation and characterization of fusant between S. cecevisiae and S. diastaticus)

  • 서정훈;김영호;전도연;이종태
    • 한국미생물·생명공학회지
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    • 제14권4호
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    • pp.305-310
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    • 1986
  • 본 연구의 목적은 yeast중 glucoamylase를 분비하는 S. diastaticus와 발효성 효모인 S. cerevisiae 간의 세포융합을 하여 당화와 발효의 두 공정을 단일화하는데 있다. 각각의 Parental protoplast를 1:1로 섞은 후 PEG(M W. 4,000) 30%와 10mM CaCl$_2$용액으로 fusion시킨 결과 $10^{-4}$~$10^{-5}$ 빈도였으며, 총 fusant중 HSDD의 경우 24%, HSDM은 36.8%가 2 회의 subculture로 친주 유리의 auxotrophic cell로 segregation하였고, glucoamylase 생성 균주 중 HSDD는 9.7%, HSDM은 12.7%만이 S. diastaticus 야생주 수준의 효소 생성을 보였다. 이들 fusant의 특징을 조사해 본 바 원 Parent보다 세포의 크기가 클 순 아니라 DNA함량도 많았으며 S. cerevisiae가 spore을 전혀 형성하지 못한데 반해 융합체들은 spore을 잘 형성하였다. 이들의 fusant중 유전안정성 이 높고 glucoamylase 생성능도 강한 HSDD-170과 HSDM-119를 최종적으로 선별하였다.

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Genetic Characterization of Atypical Shigella flexneri Isolated in Korea

  • Hong, Sa-Hyun;Choi, Yeon-Hwa;Choo, Yun-Ae;Choi, Young-Woon;Choi, Seon-Young;Kim, Dong-Wook;Lee, Bok-Kwon;Park, Mi-Sun
    • Journal of Microbiology and Biotechnology
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    • 제20권10호
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    • pp.1457-1462
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    • 2010
  • Three types of serotypically atypical Shigella flexneri isolates were collected between 2007 and 2008 from Korean patients at the Korea National Institute of Health (NIH). These atypical isolates were characterized and compared with serologically typical S. flexneri. The first grouping of 11 atypical isolates displayed agglutination only with polyB antiserum and exhibited no reaction with any typing or grouping sera (PolyB:un). The second group of 3 isolates displayed reactions with typing sera IV, but also did not bind with any grouping sera (IV:un). The third group of 14 isolates exhibited a plural agglutination pattern, reacting with typing sera II, and two grouping sera (II:(3)4,7(8)). Amongst these atypical isolates, isolates belonging to IV:un and II:(3)4,7(8) exhibited greater antibiotic resistance, in particular to ampicillin, streptomycin, and trimethoprim-sulfamethoxazole, than typical S. flexneri strains. Furthermore, all II:(3)4,7(8) strains harbored integrons. This study suggests that these multiple antibiotic-resistant atypical S. flexneri are new subserotypes of S. flexneri that await further serological classification.