• Title/Summary/Keyword: generalized linear mixed models

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Environmental Factors Influencing Tree Species Regeneration in Different Forest Stands Growing on a Limestone Hill in Phrae Province, Northern Thailand

  • Asanok, Lamthai;Marod, Dokrak
    • Journal of Forest and Environmental Science
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    • v.32 no.3
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    • pp.237-252
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    • 2016
  • Improved knowledge of the environmental factors affecting the natural regeneration of tree species in limestone forest is urgently required for species conservation. We examined the environmental factors and tree species characteristics that are important for colonization in diverse forest stands growing on a limestone hill in northern Thailand. Our analysis estimated the relative influence of forest structure and environmental factors on the regeneration traits of tree species. We established sixty-four $100-m^2$ plots in four forest stands on the limestone hill. We determined the species composition of canopy trees, regenerating seedlings, and saplings in relation to the physical environment. The relationships between environmental variables and tree species abundance were assessed by canonical correspondence analysis (CCA), and we used generalized linear mixed models to examine data on seedling/sapling abundances. The CCA ordination indicated that the abundance of tree species within the mixed deciduous forest was closely related to soil depth. The abundances of tree species growing within the sink-hole and hill-slope stands were positively related to the extent of rocky outcropping; light and soil moisture positively influenced the abundance of tree species in the hill-cliff stand. Physical factors had a greater effect on tree regeneration than did factors related to forest structure. Tree species, such as Ficus macleilandii, Dracaena cochinchinensis, and Phyllanthus mirabilis within the hill-cliff or sink-hole stand, colonized well on large rocky outcroppings that were well illuminated and had soft soils. These species regenerated well under conditions prevailing on the limestone hill. The colonization of several species in other stands was negatively influenced by environmental conditions at these sites. We found that natural regeneration of tree species on the limestone hill was difficult because of the prevailing combination of physical and biological factors. The influence of these factors was species dependent, and the magnitude of effects varied across forest stands.

Weather Conditions Drive the Damage Area Caused by Armillaria Root Disease in Coniferous Forests across Poland

  • Pawel Lech;Oksana Mychayliv;Robert Hildebrand;Olga Orman
    • The Plant Pathology Journal
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    • v.39 no.6
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    • pp.548-565
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    • 2023
  • Armillaria root disease affects forests around the world. It occurs in many habitats and causes losses in the infested stands. Weather conditions are important factors for growth and development of Armillaria species. Yet, the relation between occurrence of damage caused by Armillaria disease and weather variables are still poorly understood. Thus, we used generalized linear mixed models to determine the relationship between weather conditions of current and previous year (temperature, precipitation and their deviation from long-term averages, air humidity and soil temperature) and the incidence of Armillaria-induced damage in young (up to 20 years old) and older (over 20 years old) coniferous stands in selected forest districts across Poland. We used unique data, gathered over the course of 23 years (1987-2009) on tree damage incidence from Armillaria root disease and meteorological parameters from the 24-year period (1986-2009) to reflect the dynamics of damage occurrence and weather conditions. Weather parameters were better predictors of damage caused by Armillaria disease in younger stands than in older ones. The strongest predictor was soil temperature, especially that of the previous year growing season and the current year spring. We found that temperature and precipitation of different seasons in previous year had more pronounced effect on the young stand area affected by Armillaria. Each stand's age class was characterized by a different set of meteorological parameters that explained the area of disease occurrence. Moreover, forest district was included in all models and thus, was an important variable in explaining the stand area affected by Armillaria.

Physical Activity- and Alcohol-dependent Association Between Air Pollution Exposure and Elevated Liver Enzyme Levels: An Elderly Panel Study

  • Kim, Kyoung-Nam;Lee, Hyemi;Kim, Jin Hee;Jung, Kweon;Lim, Youn-Hee;Hong, Yun-Chul
    • Journal of Preventive Medicine and Public Health
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    • v.48 no.3
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    • pp.151-169
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    • 2015
  • Objectives: The deleterious effects of air pollution on various health outcomes have been demonstrated. However, few studies have examined the effects of air pollution on liver enzyme levels. Methods: Blood samples were drawn up to three times between 2008 and 2010 from 545 elderly individuals who regularly visited a community welfare center in Seoul, Korea. Data regarding ambient air pollutants (particulate matter ${\leq}2.5{\mu}m$ [$PM_{2.5}$], nitrogen dioxide [$NO_2$], ozone [$O_3$], carbon monoxide, and sulfur dioxide) from monitoring stations were used to estimate air pollution exposure. The effects of the air pollutants on the concentrations of three liver enzymes (aspartate aminotransferase [AST], alanine aminotransferase [ALT], and ${\gamma}$-glutamyltranspeptidase [${\gamma}$-GTP)]) were evaluated using generalized additive and linear mixed models. Results: Interquartile range increases in the concentrations of the pollutants showed significant associations of $PM_{2.5}$ with AST (3.0% increase, p=0.0052), ALT (3.2% increase, p=0.0313), and ${\gamma}$-GTP (5.0% increase, p=0.0051) levels; $NO_2$ with AST (3.5% increase, p=0.0060) and ALT (3.8% increase, p=0.0179) levels; and $O_3$ with ${\gamma}$-GTP (5.3% increase, p=0.0324) levels. Significant modification of these effects by exercise and alcohol consumption was found (p for interaction <0.05). The effects of air pollutants were greater in non-exercisers and heavy drinkers. Conclusions: Short-term exposure to air pollutants such as $PM_{2.5}$, $NO_2$, and $O_3$ is associated with increased liver enzyme levels in the elderly. These adverse effects can be reduced by exercising regularly and abstinence from alcohol.

Generalized Linear Mixed Model for Multivariate Multilevel Binomial Data (다변량 다수준 이항자료에 대한 일반화선형혼합모형)

  • Lim, Hwa-Kyung;Song, Seuck-Heun;Song, Ju-Won;Cheon, Soo-Young
    • The Korean Journal of Applied Statistics
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    • v.21 no.6
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    • pp.923-932
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    • 2008
  • We are likely to face complex multivariate data which can be characterized by having a non-trivial correlation structure. For instance, omitted covariates may simultaneously affect more than one count in clustered data; hence, the modeling of the correlation structure is important for the efficiency of the estimator and the computation of correct standard errors, i.e., valid inference. A standard way to insert dependence among counts is to assume that they share some common unobservable variables. For this assumption, we fitted correlated random effect models considering multilevel model. Estimation was carried out by adopting the semiparametric approach through a finite mixture EM algorithm without parametric assumptions upon the random coefficients distribution.

Residential Mobility and Housing Preference of Daegu Metropolitan City (대구시민의 주거이동 요인과 주택선호성향 분석)

  • Im, Jun-Hong;Kim, Han-Soo;Song, Heung-Soo
    • Journal of the Korean housing association
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    • v.25 no.4
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    • pp.93-100
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    • 2014
  • The purpose of this study, analyzing the primary factors for residential mobility and housing preference of Daegu citizens, is to provide a basic data for future housing policies. The results are as follows: First, 32.1% of Daegu citizens have intention of residential mobility. Especially the residents in central (50.0%), southern (59.0%) and western Daegu showed more intention than those in other districts. Second, we used the GLMM (Generalized Linear Mixed Models) to analyze the main factors for residential mobility. The results are as follows; 1) the residents who have lower housing satisfaction with the type of housing, parking, and educational environment, 2) those who are male and younger, 3) those who live in rented house have more intention of housing mobility. Third, based on the analysis on the preference change of the type of housing, the preference of the apartments is getting higher, while that of the detached houses is getting lower (past: 40.1%${\rightarrow}$present: 54.8%${\rightarrow}$future: 66.7%). 28.8% of the respondents (444) expressed intention to live in the public rental houses, in case they are provided in the areas they are moving to. Fourth, when we analyzed the size of the houses they actually lived in and that of the houses they prefer to live in case of moving, we found that in general they tend to move in smaller housing than in the past. The results of the analysis showed that in order to minimize the possible moving away from the current residential areas due to the dissatisfaction with the housing environment, in the first place the improvement in the quality of the houses, parking and education environment is needed.

Volunteering, Hypertension Risks, and Related Phenomena: A Prospective Cohort Study (자원봉사활동과 고혈압 및 관련 현상과의 전향적 연구)

  • Lee, Hyunkee
    • 한국노년학
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    • v.41 no.3
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    • pp.397-420
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    • 2021
  • The paper tried to determine relationships between volunteering and hypertension risks, symptom betterment, activity difficulty occurrences, and medicine treatment among middle-aged and older adults, with a prospective cohort study. Multilevel mixed-effects generalized linear models were used for the analysis of longitudinal panel data collected over 10 years from 2008 to 2018, using 5,867 cohort samples. The results showed that those who volunteered at least 200 hours per year were 3.4 times more lower than not-volunteering in risks of hypertension, those who volunteered yearly 50~99 hours were a lot more improved than not-volunteering in the symptom betterment, those who volunteered yearly at least 200 hours were 7.7 times lower than not-volunteering in activity difficulty occurrences, and those who volunteered yearly 50~99 hours were 2.5 times lower than not-volunteering in the occurrences of medicine treatment. These indicate that volunteering among middle-aged and older adults may have health benefits against incident hypertension. Finally the thesis discusses the study limitations, future directions of studies, and the practices implications.

Impact of combined at-home bleaching and whitening toothpaste use on the surface and color of a composite resin

  • Carolina Meneghin Barbosa;Renata Siqueira Scatolin;Waldemir Francisco Vieira-Junior;Marcia Hiromi Tanaka;Laura Nobre Ferraz
    • Restorative Dentistry and Endodontics
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    • v.48 no.3
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    • pp.26.1-26.12
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    • 2023
  • Objective: This in vitro study aimed to evaluate the effects of different whitening toothpastes on a composite resin during at-home bleaching with 10% carbamide peroxide. Materials and Methods: Sixty samples (7 mm × 2 mm) were used for color and roughness analyses, while another 60 samples (3 mm × 2 mm) were utilized to assess microhardness. The factors analyzed included toothpaste, for which 5 options with varying active agents were tested (distilled water; conventional toothpaste; whitening toothpaste with abrasive agents; whitening toothpaste with abrasive and chemical agents; and whitening toothpaste with abrasive, chemical, and bleaching agents). Brushing and application of whitening gel were performed for 14 days. Surface microhardness (SMH), surface roughness (Ra), and color (ΔL*, Δa*, Δb, ΔE*ab, and ΔE00) were analyzed. The Ra and SMH data were analyzed using mixed generalized linear models for repeated measures, while the color results were assessed using the Kruskal-Wallis and Dunn tests. Results: Between the initial and final time points, all groups demonstrated significant increases in Ra and reductions in SMH. No significant differences were found between groups for SMH at the final time point, at which all groups differed from the distilled water group. Conventional toothpaste exhibited the lowest Ra, while whitening toothpaste with abrasive agent had the highest value. No significant differences were observed in ΔL*, Δa*, and Δb. Conclusions: While toothpaste composition did not affect the color stability and microhardness of resin composite, combining toothbrushing with whitening toothpaste and at-home bleaching enhanced the change in Ra.