• Title/Summary/Keyword: genera

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Conserved Genes and Metabolic Pathways in Prokaryotes of the Same Genus (동일한 속 원핵생물들의 보존 유전자와 대사경로)

  • Lee, Dong-Geun;Lee, Sang-Hyeon
    • Journal of Life Science
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    • v.29 no.1
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    • pp.123-128
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    • 2019
  • The use of 16S rDNA is commonplace in the determination of prokaryotic species. However, it has limitations, and there are few studies at the genus level. We investigated conserved genes and metabolic pathways at the genus level in 28 strains of 13 genera of prokaryotes using the COG database (conserved genes) and MetaCyc database (metabolic pathways). Conserved genes compared to total genes (core genome) at the genus level ranged from 27.62%(Nostoc genus) to 71.76%(Spiribacter genus), with an average of 46.72%. The lower ratio of core genome meant the higher ratio of peculiar genes of a prokaryote, namely specific biological activities or the habitat may be varied. The ratio of common metabolic pathways at the genus level was higher than the ratio of core genomes, from 58.79% (Clostridium genus) to 96.31%(Mycoplasma genus), with an average of 75.86%. When compared among other genera, members of the same genus were positioned in the closest nodes to each other. Interestingly, Bacillus and Clostridium genera were positioned in closer nodes than those of the other genera. Archaebacterial genera were grouped together in the ortholog and metabolic pathway nodes in a phylogenetic tree. The genera Granulicella, Nostoc, and Bradyrhizobium of the Acidobacteria, Cyanobacteria, and Proteobacteria phyla, respectively, were grouped in an ortholog content tree. The results of this study can be used for (i) the identification of common genes and metabolic pathways at each phylogenetic level and (ii) the improvement of strains through horizontal gene transfer or site-directed mutagenesis.

Two Unrecorded Veneroid species (Bivalvia, Heterodonta) from Korean Waters

  • Lee, Jun-Sang;Lee, Yong-Seok;Min, Duk-Ki
    • The Korean Journal of Malacology
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    • v.30 no.2
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    • pp.135-138
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    • 2014
  • We report two new records Korean marine bivalves. The new record species are Siliqua albida (Adams & Reeve, 1850) and Macoma (Macoma) middendorffi Dall, 1884. As a result, the family Pharidae in Korea turned out to be 8 species of 4 genera and Tellinidae are 37 species of 15 genera.

Four New Species of the Genera Masirana and Longileptoneta (Araneae, Leptonetidae) from Korea

  • Seo, Bo Keun
    • Korean Journal of Environmental Biology
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    • v.33 no.3
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    • pp.306-313
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    • 2015
  • Four new species of the genera Masirana Komatsu, 1942 and Longileptoneta n. gen. (Araneae, Leptonetidae) are described from Gyeongsangbuk-do and Chungcheongbuk-do, Korea, under the names Longileptoneta songniensis n. sp., Masirana bonghwaensis n. sp., M. ilweolensis n. sp., and M. flabelli n. sp. A new genus, Longileptoneta n. gen., is also described.

SMOOTH, ISOLATED CURVES IN FAMILIES OF CALABI-YAU THREEFOLDS IN HOMOGENEOUS SPACES

  • Knutsen, Andreas Leopold
    • Journal of the Korean Mathematical Society
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    • v.50 no.5
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    • pp.1033-1050
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    • 2013
  • We show the existence of smooth isolated curves of different degrees and genera in Calabi-Yau threefolds that are complete intersections in homogeneous spaces. Along the way, we classify all degrees and genera of smooth curves on BN general K3 surfaces of genus ${\mu}$, where $5{\leq}{\mu}{\leq}10$. By results of Mukai, these are the K3 surfaces that can be realised as complete intersections in certain homogeneous spaces.

New record of fresh-water green algae (Chlorophytes) from Korea

  • Kim, Han Soon
    • Journal of Ecology and Environment
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    • v.36 no.4
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    • pp.303-314
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    • 2013
  • The present study summarized the occurrence, distribution and autecology about 31 taxa of the green algae (Chlorophytes) collected from several swamps, reservoir and highland wet-lands in the South Korea from 2010 to 2013. This paper deals with a total 31 taxa including of 26 genera which are recorded for the first time in Korea. Among these algae, 18 genera including Pyrobotrys Arnoldi, Volvulina Playfair, Dicellula Svirenko, Echinocoleum Jao & Lee, Hofmania Chodat, Gloeotila Kutzing, Tetrachlorella Korschikov, Botryospherella P.C.Silva etc., were newly recorded in Korean fresh-water algal flora.

Three Cletodid Copepods of the Genera Limnocletodes and Kollerua (Harpacticoida, Cletodidae) from Coastal Marshes and Estuaries in South Korea

  • Lee, Ji-Min;Chang, Cheon-Young
    • Ocean Science Journal
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    • v.42 no.4
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    • pp.255-267
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    • 2007
  • Three brackish-water harpacticoid species belonging to the family Cletodidae are reported from the salt marshes in South Korea: Limnocletodes behningi Borutzky, 1926, L. angustodes Shen and Tai, 1963 and Kollerua longum (Shen and Tai 1979). Two genera, Limnocletodes and Kollerua, and the three species are newly added to Korean fauna. This paper deals with the redescription and systematic accounts of them, with detailed illustrations.

Unreported Fresh-water Algae in Korea

  • Jun Chung
    • Journal of Plant Biology
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    • v.37 no.2
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    • pp.131-139
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    • 1994
  • An investigation of the freshwater algal flora of Nakdong river estuary, Jinyang Lake and Danjang stream was carried out from May to November in 1993. This paper deals with a total 16 taxa belonging to 5 genera which are recorded for the first time in Korean freshwater algal flora. Among them, the 5 genera Coronastrum Thompson, Echinospaeridium Lemmermann, Dichtomococcus Korsikov, Dicloster Jao et al. and Siderocystopsis Swale are newly added to the freshwater algal flora of Korea.

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ON SUBFIELDS OF GK AND GENERALIZED GK FUNCTION FIELDS

  • Danisman, Yusuf;Ozdemir, Mehmet
    • Journal of the Korean Mathematical Society
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    • v.52 no.2
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    • pp.225-237
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    • 2015
  • In this article, we show that many of the genera that Giulietti and Fanali obtained from subfields of the GK curve can be obtained by using similar techniques used by Garcia, Stichtenoth and Xing. In the meantime, we obtain some new genera from the subfields of GK and generalized GK function fields.