• Title/Summary/Keyword: expression profile

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Comparative Analysis of Growth-Phase-Dependent Gene Expression in Virulent and Avirulent Streptococcus pneumoniae Using a High-Density DNA Microarray

  • Ko, Kwan Soo;Park, Sulhee;Oh, Won Sup;Suh, Ji-Yoeun;Oh, TaeJeong;Ahn, Sungwhan;Chun, Jongsik;Song, Jae-Hoon
    • Molecules and Cells
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    • v.21 no.1
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    • pp.82-88
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    • 2006

  • The global pattern of growth-dependent gene expression in Streptococcus pneumoniae strains was evaluated using a high-density DNA microarray. Total RNAs obtained from an avirulent S. pneumoniae strain R6 and a virulent strain AMC96-6 were used to compare the expression patterns at seven time points (2.5, 3.5, 4.5, 5.5, 6.0, 6.5, and 8.0 h). The expression profile of strain R6 changed between log and stationary growth (the Log-Stat switch). There were clear differences between the growth-dependent gene expression profiles of the virulent and avirulent pneumococcal strains in 367 of 1,112 genes. Transcripts of genes associated with bacterial competence and capsular polysaccharide formation, as well as clpP and cbpA, were higher in the virulent strain. Our data suggest that late log or early stationary phase may be the most virulent phase of S. pneumoniae.

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Validity of the Analytic Expression for the Temperature of Joule Heated Nano-wire

  • Ha, Seung-Seok;You, Chun-Yeol
    • Journal of Magnetics
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    • v.12 no.1
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    • pp.7-11
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    • 2007

  • We confirm the validity of the analytic expression for the temperature of the Joule heated nano-wire [C.-Y. You et al. Appl. Phys. Lett. 89, 222513 (2006)] with finite element method. The temperature of the Joule heated nano-wire is essential information for the research of the current induced domain wall movement. The analytic expression includes an adjustable parameter which must be determined. Since the physical origin of the adjustable parameter is simplification of the heat source profile, the validity of the analytic expression must be examined for wide range of the nano-wire structure. By comparison with this analytic expression with the results of full numerical finite element method, the adjustable parameter has been determined. The numerically confirmed adjustable parameter values are in the range of 0.60$\sim$0.69, which is well matched with the theoretically expected one. Furthermore, it is found that the adjustable parameter is a slow varying function of the nano-wire geometry. Based on this numerical confirmation, we can apply the analytic expression for the wide range of the nano-wire geometry with proper adjustable parameters.

  • https://doi.org/10.4283/JMAG.2007.12.1.007 인용 PDF KSCI

Effects of Cadmium on the Gene Expression Profile in the Rat Basal Ganglia (카드뮴이 흰쥐 뇌기저핵의 유전자 발현에 미치는 영향)

  • Lee, Chae-Kwan
    • Journal of Korean Society of Occupational and Environmental Hygiene
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    • v.20 no.1
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    • pp.29-40
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    • 2010

  • This study was aimed at investigating the gene expression profile in basal ganglia of cadmium exposed rat based on cDNA array analysis. For cDNA array analysis, adult Sprague-Dawley male rats (350 ${\pm}$ 25 g) were intraperitoneally injected with 2.0 mg/kg body weight/day of CdCl2 (0.3 ml) for 5 days. For doserelated gene expression analysis rats were intraperitoneally injected with 0.0, 0.1, 0.3, 1.0 mg/kg body weight/day of CdCl$_2$ for 5 days. Control rats were injected with equal volume of saline. Cadmium concentration of brain was analyzed by atomic absorption spectrophotometer. For cDNA array, RNA samples were extracted from basal ganglia and reverse-transcribed in the presence of [${\alpha}$32P]-dATP. Membrane sets of the Atlas Rat 1.2 array II and Toxicology array 1.2 (Clontech, Palo Alto, CA) were hybridized with cDNA probe sets. RT-PCR was employed to validate the relative gene expression patterns obtained from the cDNA array. Northern blot hybridization methods were employed to assess the dose-related gene expression. Among the 2352 cDNAs, 671 genes were detected in both array sets and 63 genes of 38 classes showed significant (more than two fold) changes in expression. Thirty five of these genes were up-regulated and twenty eight were down-regulated in the cadmium exposed group. According to the dose-related gene expression analysis, heat shock 27 kDa protein (HSP27), neurodegeneration-associated protein 1 (Neurodap 1) genes were significantly up-regulated and melatonin receptor 1a (Mel1a), Kinesin family member 3C (KIF3C), novel kinesinrelated protein (KIF1D) genes were significantly downregulated even in the low-dose of cadmium exposed group (0.1 mg/kg body weight/day). Conclusions Sixty three genes detected in this study can give some more useful informations about the cadmium-induced neurotoxicity in the basal ganglia. As well as, HSP27, Neurodap1, Mel1a, KIF3C and KIF1D genes may be useful for the study of the cadmium-induced neurotoxicity because these genes showed dramatic changes of mRNA levels in response to the low dose of cadmium exposure.

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