• Environmental Analysis Health and Toxicology
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• 제11권1_2호
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• pp.49-57
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• 1996

The production of reactive oxygen species on addition of hexavalent chromium (potassium dichromate, $K_2Cr_2O_7$ ) to lung cells in culture was studied using flow cytometer analysis. A Coulter Epics Profile flow cytometer was used to detect the formation of reactive oxygen species after $K_2Cr_2O_7$ was added to A549 cells grown to confluence. The cells were loaded with the dye, 2',7'-dichlorofluorescein diacetate, after which cellular esterases removed the acetate groups and the dye was trapped intracellularly. Reactive oxygen species oxidized the dye, with resultant fluorescence. Increased doses of Cr(VI) caused increasing fluorescence (10-fold higher than background at 200 gM). Addition of Cr(III) compounds, as the picolinate or chloride, caused no increased fluorescence. Electron paramagnetic resonance (EPR) spectroscopic studies indicated that three (as yet unidentified) spectral "signals" of the free radical type were formed on addition of 20, 50, 100 and 200 gM Cr(VI) to the A549 cells in suspension. Two other EPR 'signals" with the characteristics of Cr(V) entities were seen at field values lower than the standard free radical value. radical value.

• Mycobiology
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• 제46권4호
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• pp.349-360
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• 2018

Whole-genome sequencing of Flammulina ononidis, a wood-rotting basidiomycete, was performed to identify genes associated with carbohydrate-active enzymes (CAZymes). A total of 12,586 gene structures with an average length of 2009 bp were predicted by the AUGUSTUS tool from a total 35,524,258 bp length of de novo genome assembly (49.76% GC). Orthologous analysis with other fungal species revealed that 7051 groups contained at least one F. ononidis gene. In addition, 11,252 (89.5%) of 12,586 genes for F. ononidis proteins had orthologs among the Dikarya, and F. ononidis contained 8 species-specific genes, of which 5 genes were paralogous. CAZyme prediction revealed 524 CAZyme genes, including 228 for glycoside hydrolases, 21 for polysaccharide lyases, 87 for glycosyltransferases, 61 for carbohydrate esterases, 87 with auxiliary activities, and 40 for carbohydrate-binding modules in the F. ononidis genome. This genome information including CAZyme repertoire will be useful to understand lignocellulolytic machinery of this white rot fungus F. ononidis.

• 농약과학회지
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• 제7권4호
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• pp.288-295
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• 2003

유기인계 살충제인 chlorpyrifos에 대한 배추좀나방의 저항성 원인을 구명하기 위하여 저항성 인자로 알려진 두 가지 무독화 효소, esterases와 glutathione- S-trasferase(GST)의 활성과 작용점 효소인 acetylcholinesterase(AChE)의 insensitivity 정도를 측정하였다. 또한 chlorpyrifos와 작용점이 동일한 계통의 살충제에 대한 저항성 발달과의 상관관계를 조사하여 교차저항성 발달 특성을 검정하였다. 감수성 배추좀나방에 chlorpyrifos의 아치사량을 처리하여 160배의 저항성을 나타내도록 선발하여 실험에 사용하였다. 저항성 계통의 GST 활성은 감수성 계통의 GST 활성에 비하여 1.7배 높았으나, 감수성 계통과 저항성 계통간에 esterases 활성 차이는 없었다. 또한 chlorpyrifos의 작용점인 AChE insensitivity 측정결과 저항성 계통이 감수 성계통보다 11.6배 높았다. Chlorpyrifos 저항성 계통은 AChE을 저해하는 것으로 알려진 유기인계 및 카바 메이트계 살충제인 dichlorvos, dimethylvinphos, carbofuran에 대해서도 각각 33.6배, 17.6배, 18.7배의 insensitivity를 나타내었다. 그러나 동일한 작용점을 저해하는 phenthoate-oxon에 대해서는 1.7배의 낮은 insensitivity를 보였다. 또한 이들 약제들에 대한 교차저항성 발달정도를 측정한 결과, chlorpyrifos 저항성 계통은 dichlorvos, dimethylvinphos, carbofuran에 대하여도 각각 82배, 47배, 42배의 높은 교차저항성 발달을 나타내었으나, phenthoate에 대해서는 2.3배로 낮은 교차저항성 발달을 보여 작용점이 동일한 유사계열 약제들이라도 저항성을 유발하는 기작에는 서로 큰 차이가 있을 수 있음을 확인할 수 있었다. 본 실험 결과 AChE insensitivity 와 저항성 발달비 간에는 정의상관관계$(r=0.9951^{**},\;p^{(0.01)}$를 보이는 것으로 나타났는데, 이는 유기인계 및 카바메이트계 살충제의 저항성 발달이 AChE에 대한 insensitivity 정도와 관련 있음을 시사하는 것이다. 본 연구의 결과를 통하여 chlorpyrifos에 대한 배추좀나방의 저항성 발달은 작용점인 AChE에 대한 약제의 insensitivity가 주 요인 중 하나이며, 무독화 효소 중 GST 활성증가가 부가적인 요인이 될 수 있음을 확인할 수 있었다.

• 한국환경농학회지
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• 제8권1호
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• pp.47-54
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• 1989

동양종(東洋種)꿀벌 (Apis cerana F.)에 대(對)한 살충제(殺蟲劑)의 독성(毒性) 및 해독능력(解毒能力)을 조사(調査)하고 농약한계 사용량 결정에 기여하기 위하여 7가지 대표적인 살충제의 꿀벌에 대한 독성 및 해독효소의 활성을 조사하였다. 효소 활성은 해독효소로 알려진 microsomal oxidases, glutathione S-transferasecs, esterase와 DDT-dehydrochlorinase를 조사했고 성충(成蟲)일벌의 중장(中腸)을 사용하여 측정하였다. $LC_{50}$치의 측정 결과는 다음과 같다. 1. 공시 살충제중 DDT가 19ppm으로 독성(毒性)이 가장 낮았고 EPN이 0.75ppm으로 독성(毒性)이 가장 강(强)했다. 2. 준치사농도(準致死濃度)의 농약(農藥)이 성충(成蟲)일벌의 microsomal oxidase에 미치는 영향은 malathion 및 demeton S-methyl 처리가 aldrin epoxidase활성을 저해시켰고 N-demethylase활성은 carbayl 처리구에서 증대(增大)되었다. 3. Glutathione S-transferase(DCNB conjugation)활성은 diazinon과 malathion처리구에서 증대되었다. 4. Esterase는 malathion 및 permethrin처리구에서 ${\alpha}-NA$ esterase 활성(活性)의 저해(沮害)를 보였고 carboxylesterase와 AchE 활성은 거의 영향이 없었다. 5. DDT-dehydrochlorinase 활성은 carbaryl, malathion과 demeton S-methyl 처리구에서 저해를 보였다.

• 한국생물공학회:학술대회논문집
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• 한국생물공학회 2001년도 추계학술발표대회
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• pp.625-628
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• 2001

토양으로부터 특이적인 광학 이성질체에 활성을 갖는 두 효소원을 선별한 후, 동정하여 Pseudomonas sp. S34와 B. stearothermophilus JY144로 명명하였고, genecloning과 sequencing을 통해 유전자의 특성 및 관련효소들과의 유연관계를 규명하였다. 규명된 정보의 분석과 비교를 통해 ketoprofen ethyl ester에 활성을 갖는 효소들의 구조적 특성을 추론할 수 있었고, 이를 바탕으로 발현시스템을 구축하였다. 대량생산된 효소를 활용한 반응의 결과 높은 수율과 순도를 갖는 각각의 광학이성질체를 경제적으로 생산할 수 있었다.

• 한국생물공학회:학술대회논문집
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• 한국생물공학회 2001년도 추계학술발표대회
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• pp.652-655
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• 2001

The comparative study of enzymes that catalyze a similar reactions but have different substrate spectrum and/or stereospecificity is a powerful approach to understanding the reaction mechanism between the relative enzymes, and it was also an useful tool to cloning the related enzyme, without the typical cloning from DNA library of genomic pools. For this purpose, we conducted an approach that the comparison at the molecular and protein level of esterases, from various sources including a previously identified (S)-stereospecific esterase of Pseudomonas sp. ES1. As expected, we found an esterase family genes that shared a high similarity at the protein and genetic level in the identical genus Pseudomonad. The striking structural and biochemical identity strongly suggested the family genes to be an identical one. We, hence, aligned the family genes and designated a degenerated primer for PCR-cloning using six Pseudomonas strains as templates. As a result, a recombinant esterase from Pseudomonas fluorescens KCTC 1767 was cloned and high-level expressed with high selectivity to (R,S)-ketoprofen ethyl ester. The enzyme exhibited a high ester-hydrolyzing activity to (S)-ketoprofen but did not hydrolyzed the opposite stereoisomer. Further characteristics were discussed in our presentation.

• 한국미생물·생명공학회지
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• 제25권1호
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• pp.23-29
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• 1997

The nucleotide sequence of the estI gene encoding acetylxylan esterase I of Bacillus stearothermophilus was determined and analyzed. The estI gene was found to consist of a 810 base pair open reading frame coding for a polypeptide of 270 amino acids with a deduced molecular weight of 30 kDa. This was in well agreement with the molecular weight (29 kDa) estimated by SDS-PAGE of the purified esterase. The coding sequence was preceded by a putative ribo some binding site 10 bp upsteam of the ATG codon. Further 53 bp upstream, the transcription initiation signals were identified. The putative $_{-}$10 sequence (TCCAAT) and $_{-}$35 seqence (TTGAAT) corresponded closely to the respective consensus sequences for the Bacillus subtiis major RNA polymerase. The G+C content of the coding region of the estI was 51% whereas that of the third position of codone was 60.2%. The N-terminal amino acid sequence of the EstI deduced from the nucleotide sequence perfectly matched the corresponding region of the purified esterase described previously. Comparison with the amino acid sequence of other esterases and lipases reported so far allowed us to identify a sequence, GLSMG at positions 123 to 127 of the EstI which was reported to be the highly conserved active site sequence for those enzymes. The nucleotide sequence of the estI revealed 55.7% homology to that of the xylC coding for the acetylxylan esterase of Caldocellum saccharolyticum.

• Journal of Microbiology and Biotechnology
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• 제15권5호
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• pp.1067-1072
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• 2005

A metagenomic library was constructed using a fosmid vector, and total genomic DNA was extracted directly from soil at Cisolok (hot spring area, Indonesia). This library was composed of 10,214 clones and screened for lipolytic enzyme on tributyrin agar plates. An esterase gene (estMa) was subcloned and sequenced from a positive lipolytic active clone. Esterase EstMa was encoded by a 954-bp open reading frame and showed low ($11-33\%$) amino acid similarity to known esterases. The amino acid sequence analysis demonstrated that the enzyme is a new member of lipolytic enzyme family VI. The estMa gene encodes a preprotein of 317 amino acids with a predicted molecular mass of 34,799 Da. The purified enzyme exhibited optimal activity at $50^{\circ}C$ and pH 6.5. The $K_m,\;and\;V_{max}$ values of EstMa for the hydrolysis of p-nitrophenyl valerate were $45.3\;{\mu}M$ and 4.45 U/mg, respectively.

• 한국미생물·생명공학회지
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• 제46권3호
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• pp.300-312
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• 2018

Whole-genome sequencing of the wood-rotting fungus, Flammulina fennae, was carried out to identify carbohydrate-active enzymes (CAZymes). De novo genome assembly (31 kmer) of short reads by next-generation sequencing revealed a total genome length of 32,423,623 base pairs (39% GC). A total of 11,591 gene models in the assembled genome sequence of F. fennae were predicted by ab initio gene prediction using the AUGUSTUS tool. In a genome-wide comparison, 6,715 orthologous groups shared at least one gene with F. fennae and 10,667 (92%) of 11,591 genes for F. fennae proteins had orthologs among the Dikarya. Additionally, F. fennae contained 23 species-specific genes, of which 16 were paralogous. CAZyme identification and annotation revealed 513 CAZymes, including 82 auxiliary activities, 220 glycoside hydrolases, 85 glycosyltransferases, 20 polysaccharide lyases, 57 carbohydrate esterases, and 45 carbohydrate binding-modules in the F. fennae genome. The genome information of F. fennae increases the understanding of this basidiomycete fungus. CAZyme gene information will be useful for detailed studies of lignocellulosic biomass degradation for biotechnological and industrial applications.

• Asian-Australasian Journal of Animal Sciences
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• 제20권5호
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• pp.802-810
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• 2007

Fibrobacter succinogenes, a Gram-negative, anaerobic ruminal bacterium is a major fibre digesting species in the rumen. It intensively degrades plant cell walls by an erosion type of mechanism, burrowing its way through the complex matrix of cellulose and hemicellulose with the release of digestible and undigested cell wall fragments. The enzymes involved in this process include a combination of glucanases, xylanases, arabinofuranosidase(s) and esterases. The genome of the bacterium has been sequenced and this has revealed in excess of 100 putative glycosyl hydrolase, pectate lyase and carbohydrate esterase genes, which is greater than the numbers reported present in other major cellulolytic organisms for which genomes have been sequenced. Modelling of the amino acid sequences of two glycanases, CedA and EGB, by reference to crystallized homologs has enabled prediction of the major features of their tertiary structures. Two dimensional gel electrophoresis in conjunction with mass spectroscopy has permitted the documentation of proteins over expressed in F. succinogenes grown on cellulose, and analysis of the cell surfaces of mutant strains unable to bind to cellulose has enabled the identification of candidate proteins with roles in adhesion to the plant cell wall substrate, the precursor to cellulose biodegradation.