• 제목/요약/키워드: est population

검색결과 36건 처리시간 0.024초

동위효소 분석에 의한 Pleurotus ostreatus Complex의 유전적 변이 (Genetic Variation of the Pleurotus ostreatus Complex Based on Isozyme Analysis)

  • 이희경;유영복;민경희
    • 한국균학회지
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    • 제27권5호
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    • pp.328-336
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    • 1999
  • Isozyme comparisons of mycelial extracts from Pleurotus ostreatus were undertaken using isoelectric focusing. Enzyme isozyme patterns were Used to describe the extent of geographical diversity and degree of intraspecific variation in these extracts. A total of 77 bands were resolved from six different enzymes. Cluster analyses were performed using the zymograms for esterase (EST), glucose phosphate isomerase (GPI), leucine aminopeptidase (LAP), malate dehydrogenase(MDH), peroxidase (POX), and phosphoglucomutase (pGM). EST gave multiple banding patterns, while less variability was observed for GPI, MDH, and PGM. Cluster analyses demonstrated that strains of P. ostreatus from geographically different origins are genetically divergent, supporting the idea that there is little or no gene flow between these geographically distant population groups.

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Genetic Diversity of Finger Millet (Eleusine coracana (L.) Gaertn.) Landraces Based on EST-SSR

  • Myung Chul Lee;Yu-Mi Choi;Myoung-Jae Shin;Hyemyeong Yoon;Seong-Hoon Kim
    • 한국자원식물학회:학술대회논문집
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    • 한국자원식물학회 2020년도 춘계학술대회
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    • pp.46-46
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    • 2020
  • Finger millet is more nutritious than other and millets and widely cultivate in tropical regions of the world. Furthermore, it is more tolerant against biotic and abiotic stresses such as pest, drought and salt. For this reason, finger millet is one of the putative crops to introduce and cultivate on reclaimed land and prepare the global climate exchange in Korea. In present study, genetic diversity and structure of different populations of finger millet from Africa and South Asia was examined at molecular level using newly developed EST-Simple Sequence Repeat (EST-SSR) markers. In total, 46 primers produced 292 alleles in a size range of 100-500 bp and mean Polymorphism Information Content (PIC) and Marker Index (MI) were 0.372 and 1.04, respectively. 46 primers showed polymorphism and 21 primers were identified as having a PIC value above 0.5. Principal coordinates analysis and the dendrogram constructed out of combined data of both markers showed grouping of finger millet accessions to their respective area of collection. The 156 accessions were more classified into four groups, such as three groups of Africa collection and one group of Asia. Results of present study can be useful in identifying diverse accessions and management of this plant resource. Moreover, the novel SSR markers developed can be utilized for various genetic analyses in this species in future.

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Isolation and characterization of EST-SSR markers for Astilboides tabularis (Saxifragaceae), endangered species in Korea

  • JUNG, Eui-Kwon;KANG, Dae-Hyun;YOO, Ki-Oug;KWAK, Myounghai;KIM, Young-Dong;KIM, Bo-Yun
    • 식물분류학회지
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    • 제48권3호
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    • pp.195-200
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    • 2018
  • Genetic assessments of rare and endangered species are among the first steps necessary to establish the proper management of natural populations. Transcriptome-derived single-sequence repeat markers were developed for the Korean endangered species Astilboides tabularis (Saxifragaceae) to assess its genetic diversity. A total of 96 candidate microsatellite loci were isolated based on transcriptome data using Illumina pair end sequencing. Of these, 26 were polymorphic, with one to five alleles per locus in 60 individuals from three populations of A. tabularis. The observed and expected heterozygosity per locus ranged from 0.000 to 0.950 and from 0.000 to 0.741, respectively. These polymorphic transcriptome-derived simple sequence repeat markers would be invaluable for future studies of population genetics and for ecological conservation of the endangered species A. tabularis.

Optimum Gain Distribution of the Ampilfiers in High Power YLF($Nd^{3+}$)-Phosphate Glass($Nd^{3+}$) Laser System

  • CHi, Kyeong-Koo
    • 한국광학회:학술대회논문집
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    • 한국광학회 1989년도 제4회 파동 및 레이저 학술발표회 4th Conference on Waves and lasers 논문집 - 한국광학회
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    • pp.20-25
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    • 1989
  • The nonlinear, time dependent photon transport equations of Frantz and Nodvik, which describe the amplification of an optical pulse in an active medium, are modified to a simpler equation which describes only the amplification of energy. with this equation, the output energy of the high power YLF(Nd3+)-Phosphate Glass(Nd3+) Laser System is calculated. When the stored energy density Est is 0.10J/㎤, 0.16J/㎤, 0.228J/㎤, and 0.50J/㎤, and with the assumption of uniform population inversion density, the final output energy of this laser system is 5.38J, 176J, 317J, and 283J, respectively. The gain saturation causes distortion of the output beam. This phenomenon is described in detail at the first three rod amplifier systems in the case of E=0.228J/㎤. The peak current and decay time constant of the flashlamps, which are used to obtain population inversion in the active medium, are investigated. The flashlamp driving circuit which has optimum operational performance should have {{{{ SQRT { LC} }} time about 100$\mu$sec.

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Assessment of Genetic Diversity and Population Structure on Kenyan Sunflower (Helianthus annus L.) Breeding Lines by SSR Markers

  • Mwangi, Esther W.;Marzougui, Salem;Sung, Jung Suk;Bwalya, Ernest C.;Choi, Yu-Mi;Lee, Myung-Chul
    • 한국자원식물학회지
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    • 제32권3호
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    • pp.244-253
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    • 2019
  • In crop breeding program, information about genetic dissimilarity on breeding resources is very important to corroborate genealogical relationships and to predict the most heterozygotic hybrid combinations and inbred breeding. This study aimed to evaluate the genetic variation in Kenyan sunflower breeding lines based on simple sequence repeat (SSR). A total of 83 alleles were detected at 32 SSR loci. The allele number per locus ranged from 2 to 7 with an average of 2.7 alleles per locus detected from the 24 sunflower accessions and the average value of polymorphic information contents (PIC) were 0.384. A cluster analysis based on the genetic similarity coefficients was conducted and the 24 sunflower breeding resources were classified into three groups. The principal coordinates (PCoA) revealed 34% and 13.38% respectively, and 47.38% of total variation. It was found that the genetic diversity within the Kenyan sunflower breeding resources was narrower than that in other sunflower germplasm resources, suggesting the importance and feasibility of introducing elite genotypes from different origins for selection of breeding lines with broader genetic base in Kenyan sunflower breeding program.

Sampling, Surveillance and Forecasting of Insect Population for Integrated Pest Management in Sericulture

  • Singh, R.N.;Maheshwari, M.;Saratchandra, B.
    • International Journal of Industrial Entomology and Biomaterials
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    • 제8권1호
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    • pp.17-26
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    • 2004
  • Pest monitoring through field surveys and surveillance helps in forecasting the population build up of pest. It reduces the load of pesticides application and forms the basis of Integrated Pest Management in sericulture. Common sampling techniques for quantifying pest populations and damage caused by them are reviewed emphasizing the need for quick and simple sampling methods. Various direct and indirect sampling methods for establishing pest populations are discussed and methods have been discussed to use indirect sampling method under IPM programme in sericulture. The use of pheromone lures and traps forms one of the important ingredients of integrated pest management, which calls for integration of all available methods in a cost effective and environmental friendly manner offering consistent efficacy. Silk-worms feed on the variety of silk host plants and spin cocoons. Each silk host plant is attacked in the field by number of insect pest species. Several pests are common to mulberry, tasar, oak tasar, muga and eri host plant but pest status and seasonal abundance differs from each crop. The key pests are serious perennially occurring persistent species which cause considerable yield loss every year on large areas and require control measure. Regular occurrence of minor pest is noticed but sudden increase in its population is not known. The occasional pests are sporadic but potential causing sufficient damage. Silk losses due to attack of all the pests have not been calculated. However, information on pest biology and ecology, and control practices being practiced is available but the period of outbreak of major pests and predators on silkworms and its host plant needs to be reinvestigated. Pest and predators forecasting based on surveillance information may provide an opportunity to minimize the losses, particularly to reduce expenditure involved in pest management.

Development of EST-SSRs and Assessment of Genetic Diversity in Germplasm of the Finger Millet, Eleusine coracana (L.) Gaertn.

  • Wang, Xiaohan;Lee, Myung Chul;Choi, Yu-Mi;Kim, Seong-Hoon;Han, Seahee;Desta, Kebede Taye;Yoon, Hye-myeong;Lee, Yoonjung;Oh, Miae;Yi, Jung Yoon;Shin, Myoung-Jae;Kim, Kyung-Min
    • 한국작물학회지
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    • 제66권4호
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    • pp.443-451
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    • 2021
  • Finger millet (Eleusine coracana) is widely cultivated in tropical regions worldwide owing to its high nutritional value. Finger millet is more tolerant against biotic and abiotic stresses such as pests, drought, and salt than other millet crops; therefore, it was proposed as a candidate crop to adapt to climate change in Korea. In 2019, we used expressed sequence tag simple sequence repeat (EST-SSR) markers to evaluate the genetic diversity and structure of 102 finger millet accessions from two geographical regions (Africa and South Asia) to identify appropriate accessions and enhance crop diversity in Korea. In total, 40 primers produced 116 alleles, ranging in size from 135 to 457 bp, with a mean polymorphism information content (PIC) of 0.18225. Polymorphism was detected among the 40 primers, and 13 primers were found to have PIC values > 0.3. Principal coordinate and phylogenetic analyses, based on the combined data of both markers, grouped the finger millet accessions according to their respective collection areas.Therefore, the 102 accessions were classified into two groups, one from Asia and the other from Africa. We have conducted an in-depth study on the finger millet landrace pedigree. By sorting out and using the molecular characteristics of each pedigree, it will be useful for the management and accession identification of the plant resource. The novel SSR markers developed in this study will aid in future genetic analyses of E. coracana.

REBUILDING RAIL INFRASTRUCTURE IN NIGERIA: POLICY, PROBLEMS AND PROSPECTS

  • Oyefuga, Ben;Egbetokun, Abiodun
    • 한국철도학회:학술대회논문집
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    • 한국철도학회 2007년도 추계학술대회 논문집
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    • pp.1883-1895
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    • 2007
  • With a land area of 910,768 sq. km, population estimate of 150 million people and GDP-growth rate of 6.9% per annum (2006 est), the centrality of effective public transportation in Nigeria is readily seen. In this regard, rail transportation offers much potential because of its relative safety, reliability, lower cost to the users and being singularly capable of transforming the national economy through mass movement of people, goods and services. Within this context, the demand for an effective railway system, and the enormous potentials for profitable investment in rail infrastructure in Nigeria, is indisputable. Beginning with the history, the paper discusses the main problems of Nigeria's railway transport system; and then makes policy suggestions, after considering the potentials of rebuilding the rail infrastructure. The necessity of this work is premised on the fact that there is a significant gap in critical knowledge about Nigeria's railway transport system.

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SSR-Primer Generator: A Tool for Finding Simple Sequence Repeats and Designing SSR-Primers

  • Hong, Chang-Pyo;Choi, Su-Ryun;Lim, Yong-Pyo
    • Genomics & Informatics
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    • 제9권4호
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    • pp.189-193
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    • 2011
  • Simple sequence repeats (SSRs) are ubiquitous short tandem duplications found within eukaryotic genomes. Their length variability and abundance throughout the genome has led them to be widely used as molecular markers for crop-breeding programs, facilitating the use of marker-assisted selection as well as estimation of genetic population structure. Here, we report a software application, "SSR-Primer Generator " for SSR discovery, SSR-primer design, and homology-based search of in silico amplicons from a DNA sequence dataset. On submission of multiple FASTA-format DNA sequences, those analyses are batch processed in a Java runtime environment (JRE) platform, in a pipeline, and the resulting data are visualized in HTML tabular format. This application will be a useful tool for reducing the time and costs associated with the development and application of SSR markers.

누룩뱀(Elaphe diane) 자연집단의 체전적 변리에 관하여 (Genetic Variation in Natural Populations of the Cat-Snake (Elaphe dome))

  • 백남극;양서영
    • 한국동물학회지
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    • 제30권3호
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    • pp.211-221
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    • 1987
  • Starch gel electrophoresis was used to estimate the degree of genic variation and genetic relatedness among twelve populations of the Cat-Sanke(Elaphe diene) in Korea. Out of the 17 loci examined 9 loci (Mdh-2, Ldh-1, Ldh-2, Idh-1, Idh-2, Adh, Aco-3, ep, Got-1) were monomorphic with identical mobility in all populations, 4 loci (Pgm, Mpi, Pept-1, Got-2) were nearly identical with minor allele frequency differences, and 4 loci (Mdh-1, Fgi, Est-2, 6psd) showed moderate variation. Levels of genic variation were similar to those found for other reptilian species. The mean genetic similarity value(S) among twelve populations is 0.966. Chechu population was slightly remote genetically from the mainland populations.

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