• Title/Summary/Keyword: dynamic partitioning

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MarSel : LD based tagSNP Selection System for Large-scale SNP Haplotype Dataset (MarSel : 대용량 SNP 일배체형 데이터에 대한 연관불균형기반의 tagSNP 선택 시스템)

  • Kim Sang-Jun;Yeo Sang-Soo;Kim Sung-Kwon
    • The KIPS Transactions:PartA
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    • v.13A no.1 s.98
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    • pp.79-86
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    • 2006
  • Recently the tagSNP selection problem has been researched for reducing the cost of association studies between human's diversities and SNPs. General approach for this problem is that all of SNPs are separated into appropriate blocks and then tagSNPs are chosen in each block. Marsel in this paper is the system that involved the concept of linkage disequilibrium for overcoming the problem that the existing block partitioning approaches have short of biological meanings. In most approaches, the contiguous regions, which recombinations have LD coefficient |D'| and then tagSNP selection step is performed. And MarSel guarantees the minimum tagSNP selection using entropy-based optimal selection algorithm when tagSNPs are chosen in each block, and enables chromosome-level association studies using efficient memory management technique when input is very large-scale dataset that is impossible to be processed in the existing systems.

A Communication and Computation Overlapping Model through Loop Sub-partitioning and Dynamic Scheduling in Data Parallel Programs (데이타 병렬 프로그램에서 루프 세부 분할 및 동적 스케쥴링을 통한 통신과 계산의 중첩 모델)

  • Kim, Jung-Hwan;Han, Sang-Yong;Cho, Seung-Ho;Kim, Heung-Hwan
    • Journal of KIISE:Computer Systems and Theory
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    • v.27 no.1
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    • pp.23-33
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    • 2000
  • We propose a model which overlaps communication with computation for efficient communication in the data-parallel programming paradigm. The overlapping model divides a given loop partition into several sub-partitions to obtain computation which can be overlapped with communication. A loop partition sometimes refers to other data partitions, but not all iterations in the loop partition require non-local data. So, a loop partition may be divided into a set of loop iterations which require non-local data, and a set of loop iterations which do not. Each loop sub-partition is dynamically scheduled depending on associated message arrival, The experimental results for a few benchmarks in IBM SP2 show enhanced performance in our overlapping model.

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On-line Signature Verification Using Fusion Model Based on Segment Matching and HMM (구간 분할 및 HMM 기반 융합 모델에 의한 온라인 서명 검증)

  • Yang Dong Hwa;Lee Dae-Jong;Chun Myung-Geun
    • Journal of the Korean Institute of Intelligent Systems
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    • v.15 no.1
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    • pp.12-17
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    • 2005
  • The segment matching method shows better performance than the global and points-based methods to compare reference signature with an input signature. However, the segment-to-segment matching method has the problem of decreasing recognition rate according to the variation of partitioning points. This paper proposes a fusion model based on the segment matching and HMM to construct a more reliable authentic system. First, a segment matching classifier is designed by conventional technique to calculate matching values lot dynamic information of signatures. And also, a novel HMM classifier is constructed by using the principal component analysis to calculate matching values for static information of signatures. Finally, SVM classifier is adopted to effectively combine two independent classifiers. From the various experiments, we find that the proposed method shows better performance than the conventional segment matching method.

A Dynamic Resource Allocation Method in Tactical Network Environments Based on Graph Clustering (전술 네트워크 환경에서 그래프 클러스터링 방법을 이용한 동적 자원 할당 방법)

  • Kim, MinHyeop;Ko, In-Young;Lee, Choon-Woo
    • Journal of KIISE:Software and Applications
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    • v.41 no.8
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    • pp.569-579
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    • 2014
  • In a tactical-edge environment, where multiple weapon resources are coordinated together via services, it is essential to make an efficient binding between an abstract service and a resource that are needed to execute composite services for accomplishing a given mission. However, the tactical network that is used in military operation has low bandwidth and a high rate of packet loss. Therefore, communication overhead between services must be minimized to execute composite services in a stable manner in the tactical network. In addition, a tactical-edge environment changes dynamically, and it affects the connectivity and bandwidth of the tactical network. To deal with these characteristics of the tactical network we propose two service-resource reallocation methods which minimize the communication overhead between service gateways and effectively manage neutralization of gateways during distributed service coordination. We compared the effectiveness of these two - methods in terms of total communication overhead between service gateways and resource-allocation similarity between the initial resource allocation and the reallocation result.

Differentially Private k-Means Clustering based on Dynamic Space Partitioning using a Quad-Tree (쿼드 트리를 이용한 동적 공간 분할 기반 차분 프라이버시 k-평균 클러스터링 알고리즘)

  • Goo, Hanjun;Jung, Woohwan;Oh, Seongwoong;Kwon, Suyong;Shim, Kyuseok
    • Journal of KIISE
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    • v.45 no.3
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    • pp.288-293
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    • 2018
  • There have recently been several studies investigating how to apply a privacy preserving technique to publish data. Differential privacy can protect personal information regardless of an attacker's background knowledge by adding probabilistic noise to the original data. To perform differentially private k-means clustering, the existing algorithm builds a differentially private histogram and performs the k-means clustering. Since it constructs an equi-width histogram without considering the distribution of data, there are many buckets to which noise should be added. We propose a k-means clustering algorithm using a quad-tree that captures the distribution of data by using a small number of buckets. Our experiments show that the proposed algorithm shows better performance than the existing algorithm.

Parallel Rendering of High Quality Animation based on a Dynamic Workload Allocation Scheme (작업영역의 동적 할당을 통한 고화질 애니메이션의 병렬 렌더링)

  • Rhee, Yun-Seok
    • Journal of the Korea Society of Computer and Information
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    • v.13 no.1
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    • pp.109-116
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    • 2008
  • Even though many studies on parallel rendering based on PC clusters have been done. most of those did not cope with non-uniform scenes, where locations of 3D models are biased. In this work. we have built a PC cluster system with POV-Ray, a free rendering software on the public domain, and developed an adaptive load balancing scheme to optimize the parallel efficiency Especially, we noticed that a frame of 3D animation are closely coherent with adjacent frames. and thus we could estimate distribution of computation amount, based on the computation time of previous frame. The experimental results with 2 real animation data show that the proposed scheme reduces by 40% of execution time compared to the simple static partitioning scheme.

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A Novel Bit Allocation Method Using Two-phase Optimization Technique (2단계 최적화 방법을 이용한 비트할당 기법)

  • 김욱중;김성대
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.23 no.8
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    • pp.2032-2041
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    • 1998
  • In this work, we propose a novel bit allocation method that is to minimize overall distortions subject ot the bit rate constraint. We partition the original bitallocation problem into 'macroblock level bit allocation' problems that can be solved by conventional Lagrangian mutiplier methods and a 'frame level bit allocation' problem. To tackle the frame level problem, 'two-phase optimization' algorithm is used with iter-frame dependency model. While the existing approaches are almost impossible to find the macroblock-unit result for the moving picture coding system due to high computational complexity, the proposed algorithm can drastically reduce the computational loads by the problem partitioning and can obtain the result close to the optimal solution. Because the optimally allocated results can be used as a benchmark for bit allocation methods, the upper performance limit, or a basis for approximation method development, we expect that the proposed algorithm can be very useful for the bit allocation related works.

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Pavement condition assessment through jointly estimated road roughness and vehicle parameters

  • Shereena, O.A.;Rao, B.N.
    • Structural Monitoring and Maintenance
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    • v.6 no.4
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    • pp.317-346
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    • 2019
  • Performance assessment of pavements proves useful, in terms of handling the ride quality, controlling the travel time of vehicles and adequate maintenance of pavements. Roughness profiles provide a good measure of the deteriorating condition of the pavement. For the accurate estimates of pavement roughness from dynamic vehicle responses, vehicle parameters should be known accurately. Information on vehicle parameters is uncertain, due to the wear and tear over time. Hence, condition monitoring of pavement requires the identification of pavement roughness along with vehicle parameters. The present study proposes a scheme which estimates the roughness profile of the pavement with the use of accurate estimates of vehicle parameters computed in parallel. Pavement model used in this study is a two-layer Euler-Bernoulli beam resting on a nonlinear Pasternak foundation. The asphalt topping of the pavement in the top layer is modeled as viscoelastic, and the base course bottom layer is modeled as elastic. The viscoelastic response of the top layer is modeled with the help of the Burgers model. The vehicle model considered in this study is a half car model, fitted with accelerometers at specified points. The identification of the coupled system of vehicle-pavement interaction employs a coupled scheme of an unbiased minimum variance estimator and an optimization scheme. The partitioning of observed noisy quantities to be used in the two schemes is investigated in detail before the analysis. The unbiased minimum variance estimator (MVE) make use of a linear state-space formulation including roughness, to overcome the linearization difficulties as in conventional nonlinear filters. MVE gives estimates for the unknown input and fed into the optimization scheme to yield estimates of vehicle parameters. The issue of ill-posedness of the problem is dealt with by introducing a regularization equivalent term in the objective function, specifically where a large number of parameters are to be estimated. Effect of different objective functions is also studied. The outcome of this research is an overall measure of pavement condition.

Preprocessing Stage of Timing Simulator, TSIM1.0 : Partitioning and Dynamic Waveform Storage Management (Timing Simulator인 TSIM1.0에서의 전처리 과정 : 회로분할과 파형정보처리)

  • Kwon, Oh-Bong;Yoon, Hyun-Ro;Lee, Ki-Jun
    • Journal of the Korean Institute of Telematics and Electronics
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    • v.26 no.3
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    • pp.153-159
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    • 1989
  • This paper describes the algorithms employed in the preprocessing stage of the timing simulator, TSIM1.0, which is based on the Waveform Relaxation Method (WRM) at the CELL-level. The preprocessing stage in TSIM1.0 (1)partitions a given circuit into DC connected blocks (DCB's) (2) forms strongly connected circuts (SCC's) and (3) orders CELL's Also, the efficient waveform management technique for the WRM is described, which allows the overwriting of the waveform management technique for the WRM is described. which allows the overwriting of the waveform information to save the storage requirements. With TSIM1.0, circuits containing up to 5000 MOSFET's can be analyzed within 1 hour computation time on the IBM PC/AT. The simulation results for several types of MOS digital circuits are given to verify the performance of TSIM1.0.

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Genetically Optimized Neurofuzzy Networks: Analysis and Design (진화론적 최적 뉴로퍼지 네트워크: 해석과 설계)

  • 박병준;김현기;오성권
    • The Transactions of the Korean Institute of Electrical Engineers D
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    • v.53 no.8
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    • pp.561-570
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    • 2004
  • In this paper, new architectures and comprehensive design methodologies of Genetic Algorithms(GAs) based Genetically optimized Neurofuzzy Networks(GoNFN) are introduced, and a series of numeric experiments are carried out. The proposed GoNFN is based on the rule-based Neurofuzzy Networks(NFN) with the extended structure of the premise and the consequence parts of fuzzy rules being formed within the networks. The premise part of the fuzzy rules are designed by using space partitioning in terms of fuzzy sets defined in individual variables. In the consequence part of the fuzzy rules, three different forms of the regression polynomials such as constant, linear and quadratic are taken into consideration. The structure and parameters of the proposed GoNFN are optimized by GAs. GAs being a global optimization technique determines optimal parameters in a vast search space. But it cannot effectively avoid a large amount of time-consuming iteration because GAs finds optimal parameters by using a given space. To alleviate the problems, the dynamic search-based GAs is introduced to lead to rapidly optimal convergence over a limited region or a boundary condition. In a nutshell, the objective of this study is to develop a general design methodology o GAs-based GoNFN modeling, come up a logic-based structure of such model and propose a comprehensive evolutionary development environment in which the optimization of the model can be efficiently carried out both at the structural as well as parametric level for overall optimization by utilizing the separate or consecutive tuning technology. To evaluate the performance of the proposed GoNFN, the models are experimented with the use of several representative numerical examples.