• Title/Summary/Keyword: direct mapping

Search Result 217, Processing Time 0.031 seconds

QTL mapping of low-temperature germinability and identification of qLTG1 candidate genes in rice

  • Kim, Sun Ha;Shim, Kyu-Chan;Lee, Hyun-Sook;Le, Anh Quynh;Ahn, Sang-Nag
    • Proceedings of the Korean Society of Crop Science Conference
    • /
    • 2017.06a
    • /
    • pp.116-116
    • /
    • 2017
  • Low-temperature is one of the environmental stress factors that affect plant growth and development and consequently limit crop productivity. The control of seed germination under low-temperature is organized by many genes which are called quantitative trait loci (QTLs). High germination rate for low-temperature is an important factor of growing rice. Previously, we identified a major QTL controlling low-temperature germinability in rice using 96 introgression lines (ILs) derived from a cross between Oryza rufipogon (Rufi) and the Korean japonica cultivar, 'Hwaseongbyeo (HS)'. A $BC_3F_7$ line (TR5) showed better low-temperature germinability than its recurrent parent. TR5 was crossed with HS to develop a segregating F2:3 populations for the target QTL. Six SSR markers polymorphic between HS and Rufi were used to screen and fine map the qLTG1. The qLTG1 on chromosome 1, which accounted for 55.5% of the total phenotypic variation, confirmed that Rufi allele enhanced the low-temperature germinability. Intervals between markers CRM16 and CRM15, four candidate genes were identified. The identified candidate genes, which are encoded by a protein of unknown function, showed their direct involvement on seed germination at low-temperature. To identify genes targeted by qLTG1, we investigated the expression profiles of these candidate genes and germination behavior of qLTG1 under different stress conditions and compared to HS, Rufi, and TR5 at $13{\pm}2^{\circ}C$ for 3 days after incubation. Furthermore, transgenic rice plants will also be developed to conduct a detailed investigation on low-temperature germinability. Hence, the QTL for low-temperature germinability would be useful in rice breeding programs especially in the development of lines possessing low-temperature germinability.

  • PDF

On the Study of Nonlinear Normal Mode Vibration via Poincare Map and Integral of Motion (푸앙카레 사상과 운동적분를 이용한 비선형 정규모드 진동의 연구)

  • Rhee, Huinam
    • Journal of KSNVE
    • /
    • v.9 no.1
    • /
    • pp.196-205
    • /
    • 1999
  • The existence. bifurcation. and the orbital stability of periodic motions, which is called nonlinear normal mode, in a nonlinear dual mass Hamiltonian system. which has 6th order homogeneous polynomial as a nonlinear term. are studied in this paper. By direct integration of the equations of motion. Poincare Map. which is a mapping of a phase trajectory onto 2 dimensional surface in 4 dimensional phase space. is obtained. And via the Birkhoff-Gustavson canonical transformation, the analytic expression of the invariant curves in the Poincare Map is derived for small value of energy. It is found that the nonlinear system. which is considered in this paper. has 2 or 4 nonlinear normal modes depending on the value of nonlinear parameter. The Poincare Map clearly shows that the bifurcation modes are stable while the mode from which they bifurcated out changes from stable to unstable.

  • PDF

Application of Bayesian Multilevel Space-Time Models to Study Relative Risk of Esophageal Cancer in Iran 2005-2007 at a County Level

  • Rastaghi, Sedigheh;Jafari-Koshki, Tohid;Mahaki, Behzad
    • Asian Pacific Journal of Cancer Prevention
    • /
    • v.16 no.14
    • /
    • pp.5787-5792
    • /
    • 2015
  • Background: Reported age standardized incidence rates for esophageal cancer in Iran are 0.88 and 6.15 for females and males, at fifth and the eighth ranks, respectively, of cancers overall. The present study aimed to map relative risk using more realistic and less problematic methods than common estimators. Materials and Methods: In this ecological investigation, the studied population consisted of all esophageal cancer patients in Iran from 2005 to 2007. The Bayesian multilevel space-time model with three levels of county, province, and time was used to measure the relative risk of esophageal cancer. Analyses were conducted using R package INLA. Results: The total number of registered patients was 7,160. According to the results, the three-level model with adjustment for risk factors of physical activity and smoking had the best fit among all models. The overall temporal trend was significantly increasing. At county level, Ahar, Marand, Salmas, Bojnoord, Saghez, Sarakhs, Shahroud and Torbatejam had the highest relative risks. Physical activity was found to have significant direct association with risk of developing esophageal cancer. Conclusions: Given to great variation across geographical areas, many different factors affect the incidence of esophageal cancer. Conducting further studies at the individual level in areas with high incidence could provide more detailed information on risk factors of esophageal cancer.

Comparison of Bayesian Spatial Ecological Regression Models for Investigating the Incidence of Breast Cancer in Iran, 2005- 2008

  • Khoshkar, Ahmad Haddad;Koshki, Tohid Jafari;Mahaki, Behzad
    • Asian Pacific Journal of Cancer Prevention
    • /
    • v.16 no.14
    • /
    • pp.5669-5673
    • /
    • 2015
  • Background: Breast cancer is the most prevalent kind of cancer among women in Iran. Regarding the importance of cancer prevention and considerable variation of breast cancer incidence in different parts of the country, it is necessary to recognize regions with high incidence of breast cancer and evaluate the role of potential risk factors by use of advanced statistical models. The present study focussed on incidence of breast cancer in Iran at the province level and also explored the impact of some prominent covariates using Bayesian models. Materials and Methods: All patients diagnosed with breast cancer in Iran from 2005 to 2008 were included in the study. Smoking, fruit and vegetable intake, physical activity, obesity and the Human Development Index (HDI), measured at the province level, were considered as potential modulating factors. Gamma-Poisson, log normal and BYM models were used to estimate the relative risk of breast cancer in this ecological investigation with and without adjustment for the covariates. Results: The unadjusted BYM model had the best fit among applied models. Without adjustment, Isfahan, Yazd, and Tehran had the highest incidences and Sistan- Baluchestan and Chaharmahal-Bakhtiari had the lowest. With the adjusted model, Khorasan-Razavi, Lorestan and Hamedan had the highest and Ardebil and Kohgiluyeh-Boyerahmad the lowest incidences. A significantly direct association was found between breast cancer incidence and HDI. Conclusions: BYM model has better fit, because it contains parameters that allow including effects from neighbors. Since HDI is a significant variable, it is also recommended that HDI should be considered in future investigations. This study showed that Yazd, Isfahan and Tehran provinces feature the highest crude incidences of breast cancer.

Scale Development and Model Validation for the Process of Exercise Engagement for People with Prediabetes

  • Chang, Shu-Chuan;Yeh, Hsiu-Chen;Kuo, Yu-Lun
    • Journal of Korean Academy of Nursing
    • /
    • v.50 no.2
    • /
    • pp.298-312
    • /
    • 2020
  • Purpose: This study had two objectives: 1) to develop a scale for the process of exercise engagement (SPEE) for prediabetic individuals (PDIs); 2) to validate a structural model for the process of exercise engagement for PDIs. Methods: A cross-sectional survey with simple random sampling was conducted from September 2013 to December 2015 (in Taiwan). A total of 310 PDIs were enrolled for scale development and model validation via item analysis, factor analyses, and structural equation modeling. The Kuo model was used as the basis for developing the Chinese version of the SPEE for PDIs. Results: The SPEE contains five subscales with a total of twenty-one items that account for 54.9% to 65.9% of the total variance explained for assessing participants' process of engagement during exercise. For Kuo model validation, the model measures indicated goodness of fit between the Kuo model and sample data. Analysis further revealed a direct effect between the creating health blueprints (CHB) stage and the spontaneous regular exercise (SRE) stage (β=.60). Conclusion: The SPEE includes five subscales for assessing the psychological transition and behavioral expression at each stage of the process of exercise engagement for PDIs. The SPEE for people with prediabetes provides deeper insights into the factors of behavioral change stages that are required to initiate long-term health care outcomes and avoid developing diabetes. These insights are significant as they allow for patient-specific mapping and behavior modification to effect exercise.

Quantitative Analysis on Near Band Edge Images in GaAs Wafer (GaAs 웨이퍼의 대역단 영상에 대한 정량적 해석)

  • Kang, Seong-jun;Na, Cheolhun
    • Journal of the Korea Institute of Information and Communication Engineering
    • /
    • v.21 no.5
    • /
    • pp.861-868
    • /
    • 2017
  • Near band infrared imaging technique has adopted for imaging EL2 and shallow level distributions in undoped semi-insulating LEC GaAs. This technique, which relies on the mapping of near bandgap infrared transmission, is both rapid and non-destructive. Until now no quantitative analysis has been reported for near band edge region which gives the reverse contrast on EL2 absorption images. This paper presents the spectral, spatial and temperature dependence of photoquenching forward and inverse mechanism in the band edge domain for cells and walls and for direct and inverted contrast conditions during transitory regimes. The difference in the threshold for the EL2w and EL2b defects could be attributed to the contribution of a different electrical assistance due to a different species of impurities. Quantitative analysis results show an increased density of EL2w and a small reduction of EL2b in the region of the walls where there is a high density of dislocations.

Photogrammetric Georeferencing Using LIDAR Linear and Areal Features

  • HABIB Ayman;GHANMA Mwafag;MITISHITA Edson
    • Korean Journal of Geomatics
    • /
    • v.5 no.1
    • /
    • pp.7-19
    • /
    • 2005
  • Photogrammetric mapping procedures have gone through major developments due to significant improvements in its underlying technologies. The availability of GPS/INS systems greatly assist in direct geo-referencing of the acquired imagery. Still, photogrammetric datasets taken without the aid of positioning and navigation systems need control information for the purpose of surface reconstruction. Point features were, and still are, the primary source of control for the photogrammetric triangulation although other higher-order features are available and can be used. LIDAR systems supply dense geometric surface information in the form of three dimensional coordinates with respect to certain reference system. Considering the accuracy improvement of LIDAR systems in the recent years, LIDAR data is considered a viable supply of photogrammetric control. To exploit LIDAR data, new challenges are poised concerning the representation and reference system by which both the photogrammetric and LIDAR datasets are described. In this paper, registration methodologies will be devised for the purpose of integrating the LIDAR data into the photogrammetric triangulation. Such registration methodologies have to deal with three issues: registration primitives, transformation parameters, and similarity measures. Two methodologies will be introduced that utilize straight-line and areal features derived from both datasets as the registration primitives. The first methodology directly incorporates the LIDAR lines as control information in the photogrammetric triangulation, while in the second methodology, LIDAR patches are used to produce and align the photogrammetric model. Also, camera self-calibration experiments were conducted on simulated and real data to test the feasibility of using LIDAR patches for this purpose.

  • PDF

A Study on the Print Design Development Utilizing Tie-Dyeing Technique -Using CAD- (홀치기 염색기법을 활용한 날염 디자인 개발에 관한연구 -CAD를 이용하여-)

  • Seo, Myung-Hee;Yang, Suk-Hyang
    • Journal of the Korean Society of Clothing and Textiles
    • /
    • v.26 no.12
    • /
    • pp.1694-1700
    • /
    • 2002
  • 본 연구는 염색 과정 중에 발생하는 수질오염을 줄이고 또한 홀치기 염색기법에 의해 제작된 패턴을 모티브로 하여 수작업에서 얻지 못한 다색 의 사용을 가능케 함으로써 새로운 느낌 의 홀치기 문양 표현과 3D 모델링을 통하여 텍스타일디자인이 상품화 되었을 때의 효과를 CAD를 이용하여 살펴보고자 한 것이다. 연구방법으로는 가장 일반적인 실로 묶기, 전통적인 손바느질 느낌이 나는 시침질, 현대적 느낌이 강한 깡통에 의한 묶기와 기하학적 효과가 나는 접기 등의 홀치기염색 기법으로 수작업 한 다음 CAD를 이용하였다 연구의 결과는 다음과 같다. 첫째, 홀치기염색기법에 의해 제작된 패턴을 모티브로 하여 수작업에서 얻지 못하는 다색사용가능성이 주메뉴의 색정리, 색4전개, 색 바꾸기를 사용함으로써 가능하였다 둘째, 다양한 색을 얻기 위해서 홀치기염색의 수작업에서는 상당한 시간과 노력을 필요로 하지 만 CAD를 사용함으로써 이러한 작업 이 몇 가지 메뉴의 사용으로 짧은 시간 내에 쉽게 이루어질 수 있었다. 셋째, CAD를 통한 홀치기 염색패턴의 새로운 이미지 효과를 얻기 위해 Solarize와 Intensity Direct, Effect/Emboss를 사용함으로써 다양한 질감과 새로운 이 미지 의 홀치기염색패턴을 얻을 수 있었다. 넷째, 위의 작업 과정을 통하여 수작업에서 발생 하는 수질오염을 줄일 수 있었다. 다섯째, 이상에서 얻어진 염색패턴을 3D모델링을 통하여 상품의 제작과정과 소비자에게 착용되었을 때의 효과를 미리 볼 수 있음으로 인해서 생산자의 실패율을 줄여줄 수 있을 것으로 본다 여섯째, CAD를 이용한 이러한 일련의 과정들이 텍스타일산업 분야에 충분히 기여 할 수 있을 것으로 기대 된다.

A Study on Combustion and Emission Characteristics in Compression Ignition CRDI Diesel Engine (직접분사식 압축점화 디젤엔진의 연소 및 배기특성에 관한 연구)

  • Kim, Gi-Bok;Choi, Il-Dong;Ha, Ji-Hoon;Kim, Chi-Won;Yoon, Chang-Sik
    • Journal of the Korean Society of Industry Convergence
    • /
    • v.17 no.4
    • /
    • pp.234-244
    • /
    • 2014
  • Recently it has been focused that the automobile engine has developed in a strong upward tendency for the use of the high viscosity and poorer quality fuels in achieving the high performance, fuel economy, and emission reduction. Therefore it is not easy to solve the problems between low specific fuel consumption and exhaust emission control at motor cars. In this study, it is designed and used the engine test bed which is installed with turbocharger and intercooler. In addition to equipped using CRDI by controlling injection timing with mapping modulator, it has been tested and analyzed the engine performance, combustion characteristics, and exhaust emission as operating parameters, and they were engine speeds(rpm), injection timing(bTDC), and engine load(%). From the result of an experimental analysis, peak cylinder pressure and the rate of pressure rise were increased, and the location of it was closer toward top dead center according to the increasing of engine speed and load, and with advancing injection timing. The combustion characteristics are effected by fuel injection timing due to be enhanced the mass burned fraction. Using the engine dynamometer for analyzing the engine performance, the engine torque and power have been enhanced according to advancing the fuel injection timing. In analyzing of exhaust emission, there has been a trade-off between PM and NOx with increasing of engine speed and load, and with advanced injection timing. The experimental data are shown that the formation of NOx has increased and PM, vice versa.

Measuring Water Depth by Using a Combination of GPS/Echosounder (음향측심기와 위성항법을 이용한 하천의 수심 측량)

  • 정영동;강상구
    • Journal of the Korean Society of Surveying, Geodesy, Photogrammetry and Cartography
    • /
    • v.20 no.4
    • /
    • pp.375-381
    • /
    • 2002
  • Depth of water information is obtained mainly from echo-sounding instrument which observes the round-trip time of signal from water surface to the bottom. Photogrammetry, underwater survey and laser survey etc. are also used as another method of bathymetric surveying. These methods are used specially for making track chart in a shallow water area. On the other hand, aircraft or satellite imagery ara also used in the sea area where the effect of suspended material is low and water quality is good. Presently, general bathymetric surveying has been performed in our country, but the spatial density of surveyed point are relatively low. Therefore, in this study we built a grid water depth chart which measured combing echosounder with GPS-RTK method and the depth accuracy was analyzed by using the data of direct survey water depth. As a results, the bathymatric mapping which use echosounder is more economical method compared to the existing methods.