• Animal Systematics, Evolution and Diversity
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• v.27 no.2
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• pp.159-163
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• 2011

DNA barcoding of Bryozoa or "moss animals" has hardly advanced and lacks reference sequences for correct species identification. To date only a small number of cytochrome c oxidase subunit I (COI) sequences from 82 bryozoan species have been deposited in the National Center for Biotechnology Information (NCBI) GenBank and Barcode of Life Data Systems (BOLD). We here report COI data from 53 individual samples of 29 bryozoan species collected from Korean seawater. To our knowledge this is the single largest gathering of COI barcode data of bryozoans to date. The average genetic divergence was estimated as 23.3% among species of the same genus, 25% among genera of the same family, and 1.7% at intraspecific level with a few rare exceptions having a large difference, indicating a possibility of presence of cryptic species. Our data show that COI is a very appropriate marker for species identification of bryozoans, but does not provide enough phylogenetic information at higher taxonomic ranks. Greater effort involving larger taxon sampling for the barcode analyses is needed for bryozoan taxonomy.

• Animal Systematics, Evolution and Diversity
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• v.32 no.2
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• pp.105-111
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• 2016

The genetic structure of marine animals that inhabit the seashore is affected by numerous factors. Of these, gene flow and natural selection during recruitment have strong influences on the genetic structure of seashore-dwelling species that have larval periods. Relative contributions of these two factors to the genetic structure of marine species would be determined mainly by the duration of larval stage. The relationship between larval period and genetic structure of population has been rarely studied in Korea. In this study, genetic variations of cytochrome oxidase subunit I (COI) were analyzed in two dominant species on rocky shore habitats in the Korean peninsula: periwinkle Littorina brevicula and acorn barnacle Fistulobalanus albicostatus. Both species are not strongly structured and may have experienced recent population expansion. Unlike periwinkle, however, barnacle populations have considerable genetic variation, and show a bimodal pattern of mismatch distribution. These results suggest that barnacle populations are more affected by local adaptation rather than gene flow via larval migration. The bimodal patterns of barnacle populations observed in mismatch distribution plots imply that they may have experienced secondary contact. Further studies on seashore-dwelling species are expected to be useful in understanding the evolution of the coastal ecosystem around Korean waters.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.44 no.6
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• pp.677-683
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• 2011

Eleven individual larvae (3.6-8.0 mm notochord length, NL) were collected from the southern East Sea of Korea in July, 2010, and the adjacent Sea of Jeju Island in August, 2011. Five individuals were identified using mitochondrial DNA cytochrome oxidase subunit I (COI) sequences (494 base pairs). All were identified as Auxis rochei, their mtCOI sequences being consistent with those of adult A. rochei (d=0.000), followed by Auxis thazard (d=0.027). In terms of morphology, A. rochei larvae showed a preflexion stage of 4.8 mm NL, but a flexion stage between 5.2-6.2 mm NL, and subsequently a postflexion stage between 6.6-8.0 mm NL. During the larval stage, A. rochei differed from A. thazard in having no (or few) melanophores in the lateral caudal region.

• Journal of Species Research
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• v.9 no.1
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• pp.1-10
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• 2020

A new dragonfly species, Nannophya koreana sp. nov., is described from Korea on the basis of morphology and mitochondrial cytochrome oxidase c subunit I (COI) gene sequences. Nannophya materials from Korea and other areas in Southeast Asia were compared. The new species was previously recognized in Korea as the endangered pygmy dragonfly Nannophya pygmaea Rambur, 1842, which is widely distributed in insular and peninsular Southeast Asia. However, male adults of the Nannophya population in Korea could be distinguished from other N. pygmaea populations by the presence of a thick, incomplete black stripe on the lateral synthorax that terminated at half-length (vs. continuous to wing base), light orange (vs. red) anal appendages, and 4-5 (vs. 2-3) black teeth on the ventral superior appendages. In addition, the body length of N. koreana was generally larger (1.2-1.4 times) than that of N. pygmaea, regardless of life stage. COI gene sequences from the two groups exhibited substantial genetic differences (>12%), thereby sufficiently substantiating their differentiation. The taxonomic status, distribution, and habitat of the new species are discussed.

• Fisheries and Aquatic Sciences
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• v.24 no.6
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• pp.228-234
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• 2021

A single specimen (39.4 mm standard length) of Brachaluteres ulvarum, belonging to the family Monacanthidae has been recorded for the first time from Supseom, Jeju-do Island of southern Korea on 6 March 2021. This species was characterized by the presence of a small second dorsal spine present, the posterior end of pelvic without encasing scales, and numerous thin dark longitudinal lines on body. It was morphologically similar to the B. taylori, but distinguished by the ratio of the caudal peduncle to the head length (B. ulvarum, 2.5 to 3.7 times; B. taylori, 3.5 to 5.2 times). In addition, the former is well distinguished from the latter through mitochondrial cytochrome c oxidase subunit I (COI) sequences by genetic distances of range from 0.088 to 0.090. The new Korean name "Kko-ma-jwi-chi- sog" is proposed for the genus Brachaluteres, and "Kko-ma-jwi-chi" for the species B. ulvarum.

• Animal Systematics, Evolution and Diversity
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• v.36 no.4
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• pp.382-386
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• 2020

In this study, Prionospio depauperata Imajima, 1990 is newly reported in Korean fauna. Prionospio depauperata can be distinguished from other relatives by the four pairs of branchiae which are pinnate on chaetigers 2 and 5, and apinnate on chaetigers 3 and 4; caruncle extending to the end of chaetiger 2; and moderate dorsal crest present on chaetigers 7-13. The morphological diagnosis of P. depauperata are provided with the photographs of four Prionospio species. The mitochondrial cytochrome c oxidase subunit 1 (CO1), 16S ribosomal DNA (16S rDNA), and the nuclear 18S ribosomal DNA (18S rDNA) sequences of four Prionospio species from Korean waters, P. depauperata Imajima, 1990, P. japonica Okuda, 1935, P. krusadensis Fauvel, 1929, and P. membranacea Imajima, 1990, were determined for the first time. The inter-specific genetic distances among the congeners of four Prionospio species were 22.3-29.6% in CO1, 10.5-25.0% in 16S rDNA, and 0.3-3.6% in 18S rDNA.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.55 no.2
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• pp.189-194
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• 2022

Unidentified postflexion larva (18.57 mm in standard length, SL), belonging to the family Synodontidae was collected from Jeju Island, Korea, in November 2019. Molecular analysis revealed that the unidentified larva was identical to Synodus kaianus adults in mtDNA cytochrome c oxidase subunit I region (Kimura-2-parameter distance, d= 0.006), and was different from the close species S. macrops (d=0.220). The postflexion larva of S. kaianus has the following morphological features: regularly distributed seven peritoneal pigment spots along the alimentary canal; and, intensively distributed stellate melanophores at the middle of the base of caudal fin and behind the last anal fin ray. The postflexion larva of S. kaianus differed from that of S. macrops in snout length and size of peritoneal pigment spots. This is the first record of S. kaianus in Korea, and we suggest the Korean name "Ka-i-ya-kkoch-dong-myeol" for S. kaianus, according to Lee et al. (1999).

• Journal of Species Research
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• v.12 no.2
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• pp.174-179
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• 2023

Three newly recorded rotifers were collected through surveys of several islands in Korea: Lecane perplexa (Ahlstrom, 1938); Lindia torulosa Dujardin, 1841; and Monommata maculata Harring & Myers, 1930. These species represent 24th, second, and third records of each genus discovered in Korea, respectively. Lecane perplexa and Monommata maculata, were collected from reservoirs using plankton nets, whereas Lindia torulosa was collected from a soil sample. The morphological characteristics of the discovered species are as follows: Lecane perplexa is characterized by a straight or slightly concave anterior margin of the lorica, an incomplete transverse fold on the ventral lorica, and a single toe with pseudoclaws and accessory claws; Lindia torulosa has an illoricated and vermiform body, a head with rostrum, a pair of auricles, cardate type trophi, and distinctively shaped epipharynx components; and Monommata maculata is characterized by long toes, an inner margin of rami with 10-12 serrated teeth, 3-4 large teeth, and interlocking teeth. Here, the morphological characteristics of the three Korean monogonont rotifers, which include trophi photographs, are presented. In addition, partial sequences of the mitochondrial cytochrome c oxidase subunit I (COI) of each species are presented.

• Journal of Veterinary Clinics
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• v.41 no.2
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• pp.88-94
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• 2024

Pet rabbits are affected by the highly contagious ectoparasite Psoroptes (P.) ovis, which carries significant economic implications for the global rabbit industry. Accurate identification of the mite species remains essential to implement effective treatment and control strategies. Two approximately one-year-old female pet rabbits were admitted to the Veterinary Teaching Hospital of Chungbuk National University due to excessive scratching of the ears and the presence of waxy debris within the ear canals. Mites were isolated from the waxy debris extracted from the ear canals and subsequently identified as Psoroptes spp. through microscopic examination. Species confirmation was achieved through mitochondrial cytochrome c oxidase subunit 1 (cox1) gene analysis. The analysis revealed the mites to be P. ovis based on cox1 gene sequences. The deposited GenBank accession numbers for these sequences are OR985022 and OR985023. This represents the first report of mitochondrial cox1 gene sequences of P. ovis isolated from pet rabbits in South Korea.

• Journal of fish pathology
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• v.33 no.1
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• pp.15-21
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• 2020

We found skin flukes in snubnose pompano (Trachinotus blochii) from a public aquarium and attempted clear identification of them to the species level by morphology and molecular analyses. Skin flukes were collected from snubnose pompano showing dyspnea, anorexia and mild hemorrhage on the skin. All the fish samples (n=2) were infected with the flukes on the skin, gill and eyes, covered with excessive mucus. The isolated worms were transferred for making slide specimen and PCR amplification targeting 18S rDNA, 28S rDNA, mitochondrial cytochrome c oxidase subunit 1 (mt cox1) and cytochrome b (Cytb) genes for further analyses. Morphology and measurements data of our slide specimen coincided with those of Neobenedenia girellae. The sequence data of 2 genes (28S rDNA and Cytb) and the phylogenetic trees revealed that our specimen consistently belonged to the N. girellae clade. For 18S rDNA and mt cox1 genes, there was no sequence of either of these 2 Neobenedenia species from the type host available in GenBank. This is the first record of N. girellae in snubnose pompano, but it is still unclear if the snubnose pompano is a natural host for N. girellae or not because N. girellae is known to have an unusual broad host range and the host-switching can occur particularly in captive conditions such as aquarium or aquaculture facilities.