• 한국자기공명학회논문지
• /
• 제25권3호
• /
• pp.39-44
• /
• 2021

The CRISPR-Cas system provides adaptive immunity for bacteria and archaea against invading phages and foreign plasmids. In the Class 1 CRISPR-Cas system, multi-subunit Cas proteins assemble with crRNA to bind to DNA targets. To disarm the bacterial defense system, bacteriophages evolved anti-CRISPR (Acr) proteins that actively inhibit the host CRISPR-Cas function. Here we report the backbone resonance assignments of AcrIF7 protein that inhibits the type I-F CRISPR-Cas system of Pseudomonas aeruginosa using triple-resonance nuclear magnetic resonance spectroscopy. We employed various computational methods to predict the structure and binding interface of AcrIF7, and assessed the model with experimental data. AcrIF7 binds to Cas8f protein via flexible loop regions to inhibit target DNA binding, suggesting that conformational heterogeneity is important for the Cas-Acr interaction.

• Asian Pacific Journal of Cancer Prevention
• /
• 제16권7호
• /
• pp.2707-2712
• /
• 2015

Background: The human homologue of the mouse double minute 2 (MDM2) gene is a negative regulator of Tp53. MDM2-309T>G a functional promoter polymorphism was found to be associated with overexpression thereby attenuation of Tp53 stress response and increased cancer susceptibility. We have planned to evaluate the possible role of MDM2-309T>G polymorphism with risk and response to chemotherapy in AML. Materials and Methods: A total of 223 de novo AML cases and 304 age and sex matched healthy controls were genotyped for the MDM2-309T>G polymorphism through the tetra-primer amplification refractory mutation system (ARMS)-PCR method. In order to assess the functional relationship of -309T>G SNP with MDM2 expression level, we quantified MDM2 mRNA in 30 primary AML blood samples through quantitative RT-PCR. Both the (-309T>G) genotypes and the MDM2 expression were correlated with disease free survival (DFS) rates among patients who have achieved complete remission (CR) after first induction chemotherapy. Results: MDM2-309T>G polymorphism was significantly associated with AML development (p<0.0001). The presence of either GG genotype or G allele at MDM2-309 confered 1.79 (95% CI: 1.12-2.86; p<0.001) and 1.46 fold (95%CI: 1.14-1.86; p= 0.003) increased AML risk. Survival analysis revealed that CR+ve cases with GG genotype had significantly increased DFS rates (16months, p=0.05) compared to CR+ve TT (11 months) and TG (9 months) genotype groups. Further, MDM2 expression was also found to be significantly elevated in GG genotype patients (p=0.0039) and among CR+ve cases (p=0.0036). Conclusions: The MDM2-309T>G polymorphism might be involved in AML development and also serve as a good prognostic indicator.

• 생태와환경
• /
• 제53권2호
• /
• pp.165-172
• /
• 2020

중금속은 다양한 경로를 통해 환경 중 배출되어 서식 생물에 노출되며 체내 다양한 생리학적 불균형을 유도한다. 본 연구에서는 수서생물지표종으로 이용되는 깔따구(Chironomus riparius)를 이용하여 야외 중금속(Al, Aluminum; Cr, Chromium; Cu, copper; Mn, Manganese; Zn, Zinc) 농도 노출에 따른 다양한 분자발현 반응과 상관성을 분석하였다. 생물 체내 분자 반응을 관찰하기 위해 heat shock protein 40, 70, 90 (HSP40, 70, 90), cytochrome 450(CYP450), Glutathione S-transferase (GST) and Serine-type endopeptidase (SP)를 이용하였다. 그 결과, 스트레스 분자마커로 이용되는 HSPs 유전자들은 중금속 노출된 개체들에서 대조군보다 높은 경향을 보였으며 Cu 노출 시 가장 높은 발현을 나타냈다. 해독에 관여하는 CYP450과 GST 유전자 발현 결과, Cr과 Cu에서는 다른 노출군에 비해 높은 발현 경향을 나타냈다. SP 유전자 발현 결과 Al을 제외한 모든 노출군이 대조군과 유사한 발현 패턴을 보였다. 이와 같은 연구 결과는 실내에서 환경 중 존재하는 실제 농도를 반영한 독성실험을 통해 노출물질과 농도에 따라 특이적으로 발현하는 분자마커 패턴을 보고하였다. 또한, 수생태계로 유입되는 중금속이 하천에 서식하는 생물에 주는 유해 영향에 대한 정보와 분자 지표 유전자들의 현장 적용 가능성을 보여준다.

• 미생물학회지
• /
• 제50권1호
• /
• pp.33-39
• /
• 2014

대전일원의 유류오염 지역의 토양으로부터 원유를 단일 탄소원으로 이용하는 총 144균주를 순수분리 하였고, 이중 유화능과 성장률 그리고 표면장력활성이 가장 우수한 한 균주를 최종 선별하여 형태 및 생리 생화학적 특성을 조사하고 16S rRNA 염기서열을 분석을 통해 Pseudomonas sp. HN37이라 명명하였다. 최종 선별된 Pseudomonas sp. HN37는 여러 종류의 지방족 탄화수소와 3,5-dinitrosalicylic acid와 2,4-dichlorophooxyacetic acid를 단일 탄소원으로 이용하여 성장하였다. 그리고 이 균주는 암피실린과 클로람페니콜 항생제와 Ba, Cr, Li, Mn 중금속에 대해 강한 내성을 갖고 있었고, pH 6.0-9.0과 $30^{\circ}C$에서 성장능과 표면장력활성, 그리고 유화능이 가장 우수한 것으로 확인되었다. 또 Pseudomonas sp. HN37는 1% (v/v) 원유 농도와 1%(w/v) NaCl에서 최대 유화능과 표면장력활성을 나타내었고, LB배지에서 배양 15시간 후에 표면장력활성이 62 dyne/cm에서 27 dyne/cm까지 감소하였다.

• 대한한방내과학회지
• /
• 제28권2호
• /
• pp.304-320
• /
• 2007

목적 : 황기추출물이 생쥐의 5-FU로 유발된 골수억제와 삶의 질 저하의 개선에 미치는 효과를 연구하고자 한다. 방법 : 골수억제에 미치는 영향이 평가를 위해 Complete Blood Count, Histological Analysis of BM, Cell Colony Forming Assay for Hematopoietic Progenitor를 시행하고, 삶의 질에 미치는 영향을 평가하기 위해 Swimming Test, Survival Rate, Nitric Oxide (NO) Assay, $^{51}Cr$ Release Assay in NK Cell, mRNA Expressions of $IL-1{\beta}$, IL-2, IL-4, IL-6, IL-10, $TNF-{\alpha}$, $IFN-{\gamma}$, $TGF-{\beta}$ and GM-CSF in Spleen Cells를 시행하였다. 결과 : 황기추출물을 골수억제를 호전시켜 말초혈액수치를 회복시키고, 골수파괴를 보호하는 효과를 보이며, 대조군에 비해 혈구생성을 촉진시키며, 대조군에 비해 생존율과 수영시간을 증가시키며, 대식세포와 자연살상세포의 활동성을 증가시키며, 종양면역과 관련된 싸이토카인(IL-2, IL-6, $IFN-{\gamma}$)의 발현을 증가시켰다. 결론 : 5-FU로 유발된 골수억제와 삶의 질 저하의 개선에 미치는 황기추출물의 유용성이 기대되며 향후 이에 대한 지속적인 연구가 필요할 것으로 사료된다.

• 미생물학회지
• /
• 제40권4호
• /
• pp.320-327
• /
• 2004

대전 근교의 유류로 오염된 토양으로부터 유류를 분해하는332개의 세균 콜로니를 분리한 후 이 중 lipase 활성이 우수한 한 균주를 최종 선별하여 생리생화학적 조사와 16S rRNA 염기서열분석 등을 통하여 동정한 결과 Acinetobactor sp. B2로 확인되었다. 최종 선별된 Acinetobactor sp. B2는 trehalose, mannitol을 제외한 다양한 당을 이용하였고, kanamycin, streptomycin, tetracycline, spectinomycin의 항생제에 대해서 약한 내성을, 그리고 Ba, Li, Mn, Al, Cr, Pb 등의 중금속에 대해서는 mg/ml 단위까지 강한 내성을 나타냈고 생장 최적 온도는 $30^{\circ}C$로 확인되었다. Acinetobactor sp. B2에서 정제된 lipase의 분자량은60 kDa이었고, 이 효소의 최적 온도와 PH는 각각 $40^{\circ}C$와 pH 10이었다. 그리고p-nitrophenyl palmitate (pNPP)를 가수분해하는데 필요한 활성에너지는 $4-37{\circ}C$의 범위에서 2.7 kcal/mol 이었고, $60^{\circ}C$ 이상의 온도에서는 불안정한 효소임이 확인되었다. 또 pNPP에 대한 이 효소의 Michaelis constant (Km)와 최대속도상수 $(V_{max})$값은 각각 21.8 ${\mu}M$과 $270.3\;{\mu}M\;min^{-1}mg^{-1}$ 이었고, 이 효소는 $Cd^{2+},\;Co^{2+},\;Fe^{2+},\;Hg^{2+},$ EDTA, 2-mercaptoethanol에 의해 강하게 억제되었다.

• 환경생물
• /
• 제41권2호
• /
• pp.167-178
• /
• 2023

Large amounts of waste and wastewater from aquaculture have negatively impacted ecosystems. Among them, shrimp aquaculture wastewater contains large amounts of nitrogen contaminants derived from feed residues in an aerobic environment. This study isolated candidate strains from adult rockworms to treat shrimp aquaculture wastewater (SAW) in an aerobic environment. Among 87 strains isolated, 25 grew well at the same temperature as the shrimp aquaculture with excellent polymer degradation ability (>0.5 cm clear zone). Six isolates (strains AL1, AL4, AL5, AL6, LA10, and PR15) were finally selected after combining strains with excellent polymer degradation ability without antagonism. 16S rRNA sequencing analysis revealed that strains AL1, AL4, AL5, AL6, LA10, and PR15 were closely related to Bacillus paramycoides, Bacillus pumilus, Stenotrophomonas rhizophila, Bacillus paranthracis, Bacillus paranthracis, and Micrococcus luteus, respectively. When these six isolates were applied to SAW, they reached a maximum cell viability of 2.06×10⁵ CFU mL^-1. Their chemical oxygen demand (COD_Cr) and total nitrogen(TN) removal rates for 12h were 51.0% and 44.6%, respectively, when the COD_Cr/TN ratio was approximately 10.0. Considering these removal rates achieved in this study under batch conditions, these six isolates could be used for aerobic denitrification. Consequently, these six isolates from rockworms are good candidates that can be applied to the field of aquaculture wastewater treatment.

• Parasites, Hosts and Diseases
• /
• 제55권6호
• /
• pp.601-606
• /
• 2017

Cystoisospora is responsible for morbidity in immunocompromised patients. PCR is sensitive for diagnosing Cystoisospora; however, it needs reevaluation for differential molecular diagnosis of cystoisosporiasis. We aimed at evaluating melting curve analysis (MCA) after real-time PCR (qPCR) in diagnosis and genotyping of Cystoisospora as an alternative to conventional PCR. We included 293 diarrheic stool samples of patients attending the Department of Clinical Oncology and Nuclear Medicine of Cairo University Hospitals, Egypt. Samples were subjected to microscopy, nested PCR (nPCR), and qPCR targeting the internal transcribed spacer 2 region (ITS2) of the ribosomal RNA (r RNA) gene followed by melting temperatures ($T_ms$) analysis and comparing the results to PCR-RFLP banding patterns. Using microscopy and ITS2-nPCR, 3.1% and 5.8% of cases were Cystoisospora positive, respectively, while 10.9% were positive using qPCR. Genotyping of Cystoisospora by qPCR-MCA revealed 2 genotypes. These genotypes matched with 2 distinct melting peaks with specified $T_ms$ at $85.8^{\circ}C$ and $88.6^{\circ}C$, which indicated genetic variation among Cystoisospora isolates in Egypt. Genotype II proved to be more prevalent (65.6%). HIV-related Kaposi sarcoma and leukemic patients harbored both genotypes with a tendency to genotype II. Genotype I was more prevalent in lymphomas and mammary gland tumors while colorectal and hepatocellular tumors harbored genotype II suggesting that this genotype might be responsible for the development of cystoisosporiasis in immunocompromised patients. Direct reliable identification and differentiation of Cystoisospora species could be established using $qPCR-T_ms$ analysis which is useful for rapid detection and screening of Cystoisospora genotypes principally in high risk groups.

• 혜화의학회지
• /
• 제22권2호
• /
• pp.67-79
• /
• 2014

In order to investigate the efficacy of BJBB on atopic dermatitis, various immune related factors were studied. The results and conclusions are as follows. Atopic dermatitis symptoms were improved in BJBB treated group and significant decrease in dermatitis index were observed in 13 weeks. ALT, AST and BUN, Cr levels were all with in the normal ranges in BJBB treated group, indicating no induced toxicity. BJBB treated group showed significant decrease in CD4+, CD11b+/Gr-1+ immune cell ratio in dorsal skin by 33% and 62% respectively. BJBB treated group showed significant decrease in the expression of IL-4, IL-5, IL-13 and histamine by 83%, 62%, 53% and 61% respectively. Also the group showed decrease in the transcription of IL-4, IL-5 and IL-13 mRNA in spleen by 41%, 52% and 50% respectively. BJBB treated group showed decrease in the expression of IgE by 57% respectively. The results above indicated that treatment of BJBB improved atopic dermatitis symptoms by immune modulation activity a clinical evidence. thus, BJBB has a potential use as a composition of medicinal plants for treatment against inflammation related disease.

• 대한의생명과학회지
• /
• 제26권2호
• /
• pp.114-119
• /
• 2020

Of the various types of mice used for genome editing, conditional knock-out (cKO) mice serve as an important model for studying the function of genes. cKO mice can be produced using loxP knock-in (KI) mice in which loxP sequences (34 bp) are inserted on both sides of a specific region in the target gene. These mice can be used as KO mice that do not express a gene at a desired time or under a desired condition by cross-breeding with various Cre Tg mice. Genome editing has been recently made easy by the use of third-generation gene scissors, the CRISPR-Cas9 system. However, very few laboratories can produce mice for genome editing. Here we present a more efficient method for producing loxP KI mice. This method involves the use of an HDR vector as the target vector and ssODN as the donor DNA in order to induce homologous recombination for producing loxP KI mice. On injecting 20 ng/µL of ssODN, it was observed that the target exon was deleted or loxP was inserted on only one side. However, on injecting 10 ng/µL of the target HDR vector, the insertion of loxP was observed on both sides of the target region. In the first PCR, seven mice were identified to be loxP KI mice. The accuracy of their gene sequences was confirmed through Sanger sequencing. It is expected that the loxP KI mice produced in this study will serve as an important tool for identifying the function of the target gene.