• Animal Bioscience
• /
• 제36권7호
• /
• pp.1003-1009
• /
• 2023

Objective: The objective was to compare (pedigree-based) best linear unbiased prediction (BLUP), genomic BLUP (GBLUP), and single-step GBLUP (ssGBLUP) methods for genomic evaluation of growth traits in a Mexican Braunvieh cattle population. Methods: Birth (BW), weaning (WW), and yearling weight (YW) data of a Mexican Braunvieh cattle population were analyzed with BLUP, GBLUP, and ssGBLUP methods. These methods are differentiated by the additive genetic relationship matrix included in the model and the animals under evaluation. The predictive ability of the model was evaluated using random partitions of the data in training and testing sets, consistently predicting about 20% of genotyped animals on all occasions. For each partition, the Pearson correlation coefficient between adjusted phenotypes for fixed effects and non-genetic random effects and the estimated breeding values (EBV) were computed. Results: The random contemporary group (CG) effect explained about 50%, 45%, and 35% of the phenotypic variance in BW, WW, and YW, respectively. For the three methods, the CG effect explained the highest proportion of the phenotypic variances (except for YW-GBLUP). The heritability estimate obtained with GBLUP was the lowest for BW, while the highest heritability was obtained with BLUP. For WW, the highest heritability estimate was obtained with BLUP, the estimates obtained with GBLUP and ssGBLUP were similar. For YW, the heritability estimates obtained with GBLUP and BLUP were similar, and the lowest heritability was obtained with ssGBLUP. Pearson correlation coefficients between adjusted phenotypes for non-genetic effects and EBVs were the highest for BLUP, followed by ssBLUP and GBLUP. Conclusion: The successful implementation of genetic evaluations that include genotyped and non-genotyped animals in our study indicate a promising method for use in genetic improvement programs of Braunvieh cattle. Our findings showed that simultaneous evaluation of genotyped and non-genotyped animals improved prediction accuracy for growth traits even with a limited number of genotyped animals.

• 한국농림기상학회지
• /
• 제16권2호
• /
• pp.114-124
• /
• 2014

본 연구는 2011년 100ha 이상의 대형산불 피해지인 울진과 영덕지역을 대상으로 하였으며 산불피해강도를 평가하기 위해 현장조사와 고해상도 위성영상자료 분석을 병행하였다. 위성영상자료 분석 시 산불피해지역의 피해강도를 가장 적절하게 평가할 수 있는 영상분류기법들을 비교 분석하여 최적의 피해강도 평가방법을 선정하였다. 대형산불 피해지역의 최적의 피해강도 평가기법으로는 현장조사에서 획득한 트레이닝 지역의 정보를 이용한 최대우도법을 적용하였을 때 가장 좋은 평가결과를 보였다. 산불피해강도의 정확도 검증 결과, 평균 전체정확도는 88.38%와 Kappa coefficient는 0.8147로 나타났다. 분류정확도는 최대우도법, NDVI, 최소거리법 순으로 나타났다. 산불피해강도 현장조사 결과와 위성영상자료에서 추출한 피해강도의 상관관계는 울진산불 피해지에서 r = -0.544, 영덕산불 피해지는 r = -0.616으로 나타났다.

• The Korean Journal of Ecology
• /
• 제28권1호
• /
• pp.15-23
• /
• 2005

아까시나무 우점림의 식생유형에 대한 분류와 분포양식 그리고 생태식물상적 특성을 규명하였다. 전통적인 식물사회학적 방법과 식생조사자료 및 식생유형간의 유사성 분석을 위하여 주좌표분석법(Principal Coordinates Analysis)과 상관 계수(correlation coefficient)가 이용되었다. 생태식물상의 분석에는 출현 식물종들의 특질(넌출형, 일이년생 생명환, 삼림식생요소, 체감도시화지수)이 이용되었다. 이러한 분석은 출현종의 상대기여도를 바탕으로 하는 입지-식생조사구 매트릭스의 식물군락표 및 군락합성표를 토대로 이루어졌다. 아까시나무 우점림은 총 77과 193속 323종으로 이루어져 있었으며, 아까시나무-닭의장풀군집(전형아군집, 떡갈나무아군집, 자귀나무아군집, 소나무아군집, 굴참나무아군집, 가중나무아군집), 아까시나무-갈대군락(전형하위군락, 띠하위군락)으로 분류되었으며, 크게 네 가지 식생형(도시형, 농촌형, 하천형, 복합형)으로 구분되었다. 아까시나무-닭의장풀군집은 졸참나무-작살나무아군단의 냉온대 남부 저산지대의 아까시나무 조림식생을 대표하는 식생단위이며, 아까시나무-갈대군락은 하천(정수역)형으로 기재되었다. 가중나무아군집은 높은 체감도시화지수에 의하여 도시형 아까시나무림으로 규정되었다. 하천형을 제외한 우리나라의 아까시나무 우점림은 지속군락으로 고려되었다.

• 융합정보논문지
• /
• 제9권6호
• /
• pp.1-6
• /
• 2019

본 연구에서는 다항식 회귀분석(Polynomial regression analysis) 방법을 이용하여 비선형 특성을 갖는 전자저울의 질량 추정 모델 개발이 이루어 졌다. 전자저울에 사용되는 로드셀의 출력 단자 전압을 기준 질량 추를 사용하여 직접 측정하였고 이 데이터를 이용하여 MS Office 엑셀의 행렬식 계산과 데이터 추세선 분석 기능을 이용하여 다항식 회귀모델을 구하였다. 5kg까지 측정 가능한 로드셀 전자저울을 사용하여 100g단위로 질량을 측정하였고 다항식 회귀분석(Multiple regression analysis) 모델을 구하였으며, 단순(1차), 2차, 3차 다항식 회귀분석에 대한 오차를 구하였다. 각 모델에 대한 회귀 방정식의 적합도 분석을 위해 결정계수(Coefficient of determination)를 제시하여 추정 질량과 측정 데이터와의 상관관계를 나타내었다. 본 연구에서 제안하는 3차 다항식 모델을 이용하여 추정 값의 표준편차가 10g, 결정계수 1.0으로 상당히 정확한 모델을 얻었다. 본 연구에 사용된 선형 회귀 분석 이론을 바탕으로 최근 인공지능 분야에서 많이 사용되고 있는 로지스틱 회귀 분석(Logistic regression analysis)을 활용하여 기상예측, 신약개발, 경제지표 분석 등의 분야에 대한 다양한 연구를 수행할 수 있을 것으로 생각된다.

• 한국연초학회지
• /
• 제30권1호
• /
• pp.33-38
• /
• 2008

This study was carried out to determine the analytical methods for heterocyclic amines(HAs) of the tobacco smoke by LC/MS/MS. HAs have been found in pyrolysate of protein and cooked food including protein, were known the Sugimura compound. HAs content of the smoke were known to exist very low ppb level. Especially, some of HAs are mutagenic and carcinogenic compounds. In according to IARC, the toxicity of N-heterocyclic amines classified IARC class 2A or 2B group. Precursors of these compounds are glutamic acid, protein and free amino acids including tryptophan, therefore, the precursors have been proved in cooked food continuously. This study was investigate multiple analysis methods for HAs and HAs contents of some commercial products. In this study, we used the linear type smoking machine for HAs analysis. At the ISO conditions, mainstream smoke was collected on cambridge filter pad, and then cambridge filter pad was extracted by 0.1% acetic acid. The extracted solution were passed cation exchange SPE cartridge to remove matrix, samples were analyzed using LC/MS/MS on MRM mode. From the result that optimized this methods, the correlation coefficient(R) of the individual compounds were good linearity over 0.999, recovery rate over 96% and the limit of detection were good values between 0.06 to 0.37 ng/mL, In addition, HAs content of some commercial products were in range of 0.02 to 43.8 ng/cig.

• 자원환경지질
• /
• 제17권1호
• /
• pp.35-47
• /
• 1984

Combined mineralogical and geochemical studies were made on two hundred eighty one representative samples from uraniferous coaly meta-pelites of the Ogcheon metamorphic terrain. Different mineral occurrence of the areas investigated should be taken into account for chemical processes for uranium extraction. Secondary uranium minerals identified are metauranocircite, metatorbernite and autunite. These are disseminated mostly on the laumontites which infused and filled secondary openings in the coaly matrix, and are often closely associated with iron oxides. The uranium distribution show distinctly log normal. Geochemical correlation coefficient of uranium and organic carbon displays +0.624~+0.796. The relationship of the major components to uranium can be expressed by the following regression equation: Log $(U_3O_8{\times}10^4)$=1.40117-0.00076 (quartz) -0.00118 (muscovite) +0.00235 (biotite) +0.00323 (other silicates) - 0.01114 (apatite) +0.01124 (hematite) +0.00149 (limonite) -0.01823 (opaques)+0.03049 (organic carbon). Uranium in the coaly meta-pelites of the Ogcheon Group was deposited together under same physico-chemical environmental conditions. There is a considerable variation in the ${\delta}^{34}S$ values (11.2~16.8 per mil) of the pyrites from the U-bearing meta-pelites, which implies sedimentary origin. The two U-bearing coaly rocks analyzed have ${\delta}^{13}C$ values between -16.88~-18.00 per mil, which suggests organic.

• 한국동물위생학회지
• /
• 제36권4호
• /
• pp.303-309
• /
• 2013

This study was conducted to determine the content of 7 mycotoxins (aflatoxin $B_1$, $B_2$, $G_1$, $G_2$, $M_1$, ochratoxin A and zearalenone) using LC-MS/MS in pork available on the Korean markets. The analysis was carried out using following conditions; C18 column ($2.1{\times}100mm$, $1.7{\mu}m$), mobile phase composed of $H_2O$ (0.1 mM $NH_4Ac$ 0.01% HCOOH) : Methanol (0.1 mM $NH_4Ac$ 0.01% HCOOH), binary pump at a flow rate of 0.5 mL/min and $2{\mu}L$ of injection volume, MS/MS detector with ESI positive and negative mode. The quantication of mycotoxins was based on matrix-matched calibration curves with a correlation coefficient in excess of 0.99 for the 7 mycotoxins. The dectection limits were ranged 0.74~2.13 ng/g, with mean recoveries between 73.10~97.46% except aflatoxin $B_1$ (61.31%). We also monitored mycotoxin residues in 208 pork samples. The test results, mycotoxins were not found except one sample. Ochratoxin A in one sample of the test samples was detected below the quantification limit.

• Bulletin of the Korean Chemical Society
• /
• 제34권11호
• /
• pp.3444-3450
• /
• 2013

Three phase hollow fiber-liquid phase microextraction (HF-LPME), which is faster, simpler and uses a more environmentally friendly sample-preparation technique, was developed for the analysis of Non-Steroidal Anti-Inflammatory Drugs (NSAIDs) in human urine. For the effective simultaneous extraction/concentration of NSAIDs by three phase HF-LPME, parameters (such as extraction organic solvent, pH of donor/acceptor phase, stirring speed, salting-out effect, sample temperature, and extraction time) which influence the extraction efficiency were optimized. NSAIDs were extracted and concentrated from 4 mL of aqueous solution at pH 3 (donor phase) into dihexyl ether immobilized in the wall pores of a porous hollow fiber, and then extracted into the acceptor phase at pH 13 located in the lumen of the hollow fiber. After the extraction, 5 ${\mu}L$ of the acceptor phase was directly injected into the HPLC/UV system. Simultaneous chromatographic separation of seven NSAIDs was achieved on an Eclipse XDB-C18 (4.6 mm i.d. ${\times}$ 150 mm length, 5 ${\mu}m$ particle size) column using isocratic elution with 0.1% formic acid and methanol (30:70) at a HPLC-UV/Vis system. Under optimized conditions (extraction solvent, dihexyl ether; $pH_{donor}$, 3; $pH_{acceptor}$, 13; stirring speed, 1500 rpm; NaCl salt, 10%; sample temperature, $60^{\circ}C$; and extraction time, 45 min), enrichment factors (EF) were between 59 and 260. The limit of detection (LOD) and limit of quantitation (LOQ) in the spiked urine matrix were in the concentration range of 5-15 ng/mL and 15-45 ng/mL, respectively. The relative recovery and precision obtained were between 58 and 136% and below 15.7% RSD, respectively. The calibration curve was linear within the range of 0.015-0.96 ng/mL with the square of the correlation coefficient being more than 0.997. The established method can be used to analyse of NSAIDs of low concentration (ng/mL) in urine.

• Bulletin of the Korean Chemical Society
• /
• 제23권8호
• /
• pp.1139-1143
• /
• 2002

Analysis of lysophosphatidic acids (LPAs) is of clinical importance as they can serve a potential marker for ovarian and other gynecological cancers and obesity. It is critically important to develop a highly sensitive and specific method for the early detection of gynecological cancers to improve the overall outcome of this disease. We have established a novel quantification method of LPAs in human plasma by negative ionization tandem mass spectrometry (MS-MS) using multiple reaction monitoring (MRM) mode without the conventional TLC step. Protein-bound lipids, LPAs in plasma were extracted with methanol : chloroform (2:1) containing LPA C14:0 as an internal standard under acidic condition. Following back extraction with chloroform and water, the centrifuged lower phase was evaporated and reconstituted in methanol. The reconstituted solution was directly injected into electrospray source of MS/MS. For MRM mode, Q1 ions selected were m/z 409, 433, 435, 437 and 457 which corresponds to molecular mass [M-H]- of C16:0, C18:2, C18:1, C18:0 and C20:4 LPA, respectively. Q2 ions selected for MRM were m/z 79, phosphoryl product. Using MS/MS with MRM mode, all the species of LPAs were completely separated from plasma matrix without severe interferences. This method allowed simultaneous detection and quantification of different species of LPAs in a plasma over a linear dynamic range of 0.01-25 ㎛olL-1 . The detection limit of the method was 0.3 pmol/mL, with a correlation coefficient of 0.9983 in most LPAs analyzed. When applied to the plasmas of normal and gynecological cancer patients, this new method differentiated two different groups by way of total LPA level.

• Investigative Magnetic Resonance Imaging
• /
• 제25권2호
• /
• pp.93-100
• /
• 2021

Purpose: (1) To evaluate the trabecular pattern at the femoral attachment of the posterior cruciate ligament (PCL) in patients with a PCL injury; (2) to analyze bone microarchitecture by applying gray level co-occurrence matrix (GLCM)-based texture analysis; and (3) to determine if there is a significant relationship between bone microarchitecture and posterior instability. Materials and Methods: The study included 96 patients with PCL tears. Trabecular patterns were evaluated on T2-weighted MRI qualitatively, and were evaluated by GLCM texture analysis quantitatively. The grades of posterior drawer test (PDT) and the degrees of posterior displacement on stress radiographs were recorded. The 96 patients were classified into two groups: acute and chronic injury. And 27 patients with no PCL injury were enrolled for control. Pearson's correlation coefficient and one-way ANOVA with Bonferroni test were conducted for statistical analyses. This protocol was approved by the Institutional Review Board. Results: A thick and anisotropic trabecular bone pattern was apparent in normal or acute injury (n = 57/61;93.4%), but was not prominent in chronic injury and posterior instability (n = 31/35;88.6%). Grades of PDT and degrees of posterior displacement on stress radiograph were not correlated with texture parameters. However, the texture analysis parameters of chronic injury were significantly different from those of acute injury and control groups (P < 0.05). Conclusion: The trabecular pattern and texture analysis parameters are useful in predicting posterior instability in patients with PCL injury. Evaluation of the bone microarchitecture resulting from altered biomechanics could advance the understanding of PCL function and improve the detection of PCL injury.