• Title/Summary/Keyword: conserved

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Search Method for Consensus Pattern of Transcription Factor Binding Sites in Promoter Region (프로모터 영역의 전사인자 결합부위 Consensus 패턴 탐색 방법)

  • Kim, Ki-Bong
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.9 no.5
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    • pp.1218-1224
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    • 2008
  • Located on the upstream of a gene, the promoter region that plays a very important role in the control of gene expression as a signal part has various binding sites for transcription factors. These binding sites are present in various parts of the promoter region and assume an aspect of highly conserved consensus sequence pattern. This paper deals with the introductions of search methods for consensus pattern, including Wataru method, EM algorithm, MEME algorithm, Genetic algorithm and Phylogenetic Footprinting method, and intends to give future prospects of research on this field.

The Expression of Hsp70 and GST Genes in Mytilus coruscus during Air Exposure and Starvation (공기노출 및 절식시기 동안 참담치, Mytilus coruscus 에서 Hsp70 및 GST 유전자 발현에 대한 연구)

  • Kim, Chul Won;Kang, Han Seung
    • The Korean Journal of Malacology
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    • v.32 no.2
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    • pp.73-81
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    • 2016
  • Heat shock proteins (HSPs), one of the most highly conserved groups of proteins characterized to date, play crucial roles in protecting cells against environmental stresses, such as heat shock, salinity and oxidative stress. The glutathione S-transferases (GST) have important role in detoxification of oxidative stress, environmental chemicals and environmental stress. GST mRNA expression have been used as biomarkers on environmental stress. The purpose of this study was to investigate the death rate and the gene expression of Hsp70 and GST during air exposure and starvation. Results showed that, the expression of Hsp70 mRNA was significantly changed in the experiment groups, such as air exposure and starvation. GST mRNA expression was significantly increased in the experimental group of starvation. These results suggest that Hsp70 and GST were played roles in biomarker gene on the air exposure and starvation.

The Role of Cytoskeletal Elements in Shaping Bacterial Cells

  • Cho, Hongbaek
    • Journal of Microbiology and Biotechnology
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    • v.25 no.3
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    • pp.307-316
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    • 2015
  • Beginning from the recognition of FtsZ as a bacterial tubulin homolog in the early 1990s, many bacterial cytoskeletal elements have been identified, including homologs to the major eukaryotic cytoskeletal elements (tubulin, actin, and intermediate filament) and the elements unique in prokaryotes (ParA/MinD family and bactofilins). The discovery and functional characterization of the bacterial cytoskeleton have revolutionized our understanding of bacterial cells, revealing their elaborate and dynamic subcellular organization. As in eukaryotic systems, the bacterial cytoskeleton participates in cell division, cell morphogenesis, DNA segregation, and other important cellular processes. However, in accordance with the vast difference between bacterial and eukaryotic cells, many bacterial cytoskeletal proteins play distinct roles from their eukaryotic counterparts; for example, control of cell wall synthesis for cell division and morphogenesis. This review is aimed at providing an overview of the bacterial cytoskeleton, and discussing the roles and assembly dynamics of bacterial cytoskeletal proteins in more detail in relation to their most widely conserved functions, DNA segregation and coordination of cell wall synthesis.

NMR characterization of SRG3 SWIRM Domain Mutant Proteins.

  • Koh, Woo-Hyoung;Kim, Min-Tae;Moon, Sun-Jin;Lee, Weon-Tae
    • Journal of the Korean Magnetic Resonance Society
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    • v.13 no.1
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    • pp.56-63
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    • 2009
  • SWIRM domain, a core domain of SRG3 is well conserved in SW13, RSC8, and MOIRA family proteins. To understand structural basis for cellular functions of the SWIRM domain, we have initiated biochemical and structural studies on SWIRM domain and mutants using gelfiltration chromatography, circular dichroism and NMR spectroscopy. The structural properties of the mutant SWIRM domains (K34A and M75A) have been characterized, showing that the structures of both wild-type and mutant proteins are a-helical conformation. The data conclude that mutations at interaction sites of its binding partner protein do not affect its secondary and tertiary structure.

Nucleotide Sequence and Analysis of the Genes for Type II Polyketide Synthase Isolated from Streptomyes albus (Streptomyces albus로부터 분리된 Type II Polyketide Synthase 유전자의 염기 서열 및 분석)

  • ;Huchinson, C.R.
    • Microbiology and Biotechnology Letters
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    • v.23 no.2
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    • pp.178-186
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    • 1995
  • Streptomyces albus wild type ATCC 21838 produced salinomycin, polyether antibiotic. To clone genes related salinomycin production, a genomic library was screened using actI as a DNA hybridization probe. pWHM 210 was isolated, which contained an approximately 24 kb of insert DNA. A 3.8 kb region in the 24 kb insert DNA was hybridized to actI and the nucleotide sequence of this region was determinied. Two open reading frames found in the same direction were homologous to genes for $\beta$-keto acyl synthase/acyl transferase and chain length determining factor in type II PKS (polyketide synthase). The genes were components of minimal type II PKS genes, highly conserved and showed the strong simiarity to other type II PKS genes known today.

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Identification of 2-Deoxy-scyllo-inosose Synthase in Aminoglycoside Producer Streptomyces

  • Kharel, Madan-Kumar;Subba, Bimala;Lee, Hei-Chan;Liou, Kwang-Kyoung;Woo, Jin-Suk;Kim, Dong-Hwan;Moon, Young-Ho;Sohng, Jae-Kyung
    • Journal of Microbiology and Biotechnology
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    • v.13 no.5
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    • pp.828-831
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    • 2003
  • Although most of the DOS containing aminoglycosides are produced by Streptomyces, very little information is available about their biosynthesis. In the present paper, we report a method to isolate DOI synthase, a key enzyme in the biosynthesis of DOS, from aminoglycoside producer Streptomyces. PCR primers based on conserved region of DOI synthases were specific and reliable for the isolation of the biosynthetic genes of DOS containing aminoglycosides or the screening of the aminoglycoside producers. The use of DOI synthase as a probe could save both time and cost of cloning aminoglycoside biosynthetic genes.

GLOBAL WEAK SOLUTIONS FOR THE RELATIVISTIC VLASOV-KLEIN-GORDON SYSTEM IN TWO DIMENSIONS

  • Xiao, Meixia;Zhang, Xianwen
    • Bulletin of the Korean Mathematical Society
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    • v.55 no.2
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    • pp.591-598
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    • 2018
  • This paper is concerned with global existence of weak solutions to the relativistic Vlasov-Klein-Gordon system. The energy of this system is conserved, but the interaction term ${\int}_{{\mathbb{R}}^n}\;{\rho}{\varphi}dx$ in it need not be positive. So far existence of global weak solutions has been established only for small initial data [9, 14]. In two dimensions, this paper shows that the interaction term can be estimated by the kinetic energy to the power of ${\frac{4q-4}{3q-2}}$ for 1 < q < 2. As a consequence, global existence of weak solutions for general initial data is obtained.

An Expanding Plan of the Foundation of Fisheries Education through Localization of the Curricula in High Schools (교육과정(敎育課程)의 지역화(地域化)를 통한 수산교육(水產敎育)의 저변확대방안(底邊擴大方案))

  • Moon, Weon-Ho
    • Journal of Fisheries and Marine Sciences Education
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    • v.3 no.1
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    • pp.21-26
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    • 1991
  • The Korean economic condition needs continuous development of the marine product industries basically, and for this purpose a study on the education and training system of the technical manpower for this field is required. Moreover, the sea and its resources are not only to be utilized these days but also to be conserved for our descendants. To achieve this goal, the national support and the people's understanding on the marine product industries are very important at the first, and also the fisheries education must be activated to educate and train the technical manpower who will engage in this industrial field in the future. Especially it is necessary to develop and operate the most appropriate curricula drawn up inconsideration of each local characteristics for the fisheries education at the middle schools and high schools in Korea.

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A Study on the Village Groves in Chinan-Gun Region, Korea (진안지역 마을 숲에 관한 연구)

  • Park, Jae-Chul
    • Journal of Korean Society of Rural Planning
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    • v.5 no.1 s.9
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    • pp.56-65
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    • 1999
  • The purpose of this study was to identify remained real state of the village groves in human settlement circle. That was practiced in case of Chinan-Gun region which traditional elements had well been conserved. 33 village groves were found by site survey, reference and interview in Chinan-Gun region. 31 of 51 village groves were clarified as complementing village grove by classification of grove character. It was identified through survey that many were partially destructed by development and human overuse. The results of this study showed general, socio-behavioral characteristics, characteristics of forest state and vegetation structure of village groves in Chinan-Gun region. Length, area, form, type, motive, location, relationship of those were analyzed to identify general characteristics. Facilities, human behavior and ownership of those were analyzed to identify socio-behavioral characteristics. Principal dominant species and appearing rate, height, width, density of those, species diversity of groves were analyzed to identify forest state and vegetation structure. Interrelation between each factor were analyzed and comparative review with previous studies was achieved.

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Comparison of Biotyping, Serotyping and Molecular Typing of Yersinia enterocolitica Isolated from Spring water in Seoul (서울시내 약수에서 분리한 Yersinia enterocolitica의 생물형, 혈청형 및 분자학적 형별비교)

  • 이영기;최성민;오수경;신재영
    • Journal of environmental and Sanitary engineering
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    • v.14 no.4
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    • pp.99-109
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    • 1999
  • Enteropathogenic Yersina enterocolitica is an important cause of human and animal disease. Phenotypic and genotypic characteristics currently used to identify Yersinia enterocolitica are not necessarily sufficient to differentiate pathogenic from non-pathogenic strains or to analyze the epidemiology of yersiniae at a molecular level. To improve the characterization of Yersinia enterocolitica, A total of 65 isolates of Yersinia enterocolitica were examined with bioserotyping, antibiotic susceptibilities, PFGE, PCR-ribotyping. Genomic DNA pattern generated by PFGE are highly specific for different strains of an organism and have significant value in epidemiologic investigations. The PFGE analysis of Not I-digested chromosomal DNA of Y. enterocolitica were performed with a CHEF Mapper(Bio-Rad, USA). Not I generated 19 restriction endonuclease digestion profiles(REDP). PCR-ribotyping, performed with primers complementry to conserved regions of 16S and 23S rRNA gene, generated 13 ribotypes. PCR-ribotyping can be considered a good technich for subtyping strains of Y.enterocolitica.

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