• Title/Summary/Keyword: composition methods

Search Result 2,807, Processing Time 0.035 seconds

Estimating Amino Acid Composition of Protein Sequences Using Position-Dependent Similarity Spectrum (위치 종속 유사도 스펙트럼을 이용한 단백질 서열의 아미노산 조성 추정)

  • Chi, Sang-Mun
    • Journal of KIISE:Software and Applications
    • /
    • v.37 no.1
    • /
    • pp.74-79
    • /
    • 2010
  • The amino acid composition of a protein provides basic information for solving many problems in bioinformatics. We propose a new method that uses biologically relevant similarity between amino acids to determine the amino acid composition, where the BOLOSUM matrix is exploited to define a similarity measure between amino acids. Futhermore, to extract more information from a protein sequence than conventional methods for determining amino acid composition, we exploit the concepts of spectral analysis of signals such as radar and speech signals-the concepts of time-dependent analysis, time resolution, and frequency resolution. The proposed method was applied to predict subcellular localization of proteins, and showed significantly improved performance over previous methods for amino acid composition estimation.

Prediction of Protein Secondary Structure Content Using Amino Acid Composition and Evolutionary Information

  • Lee, So-Young;Lee, Byung-Chul;Kim, Dong-Sup
    • Proceedings of the Korean Society for Bioinformatics Conference
    • /
    • 2004.11a
    • /
    • pp.244-249
    • /
    • 2004
  • There have been many attempts to predict the secondary structure content of a protein from its primary sequence, which serves as the first step in a series of bioinformatics processes to gain knowledge of the structure and function of a protein. Most of them assumed that prediction relying on the information of the amino acid composition of a protein can be successful. Several approaches expanded the amount of information by including the pair amino acid composition of two adjacent residues. Recent methods achieved a remarkable improvement in prediction accuracy by using this expanded composition information. The overall average errors of two successful methods were 6.1% and 3.4%. This work was motivated by the observation that evolutionarily related proteins share the similar structure. After manipulating the values of the frequency matrix obtained by running PSI-BLAST, inputs of an artificial neural network were constructed by taking the ratio of the amino acid composition of the evolutionarily related proteins with a query protein to the background probability. Although we did not utilize the expanded composition information of amino acid pairs, we obtained the comparable accuracy, with the overall average error being 3.6%.

  • PDF

Effect of Proximate Composition Ratios for Biogas Production

  • Kim, Min-Jee;Kim, Soo-Ah;Kim, Sang-Hun
    • Journal of Biosystems Engineering
    • /
    • v.42 no.3
    • /
    • pp.155-162
    • /
    • 2017
  • Purpose: The objective of this study was to evaluate the biogas productivity of agricultural by-products (ABPs) based on their proximate composition. Specifically, the effects of proximate composition were investigated, and a new mixing method was developed using various ABPs that are difficult to digest for biogas production. Methods: Experiments were conducted to compare the biogas productivity between a single ABP and a mixture of ABPs that had the same proximate composition as the single ABP. To match the proximate compositions of radish waste and corn distiller's dried grains with solubles (DDGS), mixed ABPs were made from various ABPs. Biogas potential tests (BMP tests) were performed at an organic loading rate (OLR) of 2.5 g VS/L and a feed to microorganism ratio (F/M) of 0.5 under the mesophilic condition. Results: The individual ABPs (radish and corn DDGS) and the mixed ABPs (cabbage waste with skim milk waste, bean-curd waste with skim milk waste, and some others) produced similar amounts of biogas. Conclusions: The new mixing method based on proximate composition can be applied to other ABPs and organic wastes from factories and municipal waste treatment plants to develop renewable energy and effective waste treatment methods.

Development of Paper Coating Technologies to Prevent Print Mottle (II)-Optical Properties of Coated Papers Affected by Coating Pigment Composition and Coat Weight (인쇄 모틀의 방지를 위한 제지도공 기술개발 (제2보)-도공안료 조성과 도공량에 따른 도공지의 광학적 특성 변화)

  • 정준경;신동소;이학래
    • Journal of Korea Technical Association of The Pulp and Paper Industry
    • /
    • v.29 no.1
    • /
    • pp.26-35
    • /
    • 1997
  • A study was carried out to investigate such optical properties of coated papers as brightness, opacity and gloss affected by the coating pigment composition and coat weight using clay, ground calcium carbonate, precipitated calcium carbonate, and plastic pigment as pigments. The effects of drying methods and supercalendering on optical properties were also evaluated. Gloss increased abruptly while brightness and opacity decreased slightly by supercalendering due to surface smoothing and consolidating effects of the coating layers. Optical properties changed little by drying methods. Pigment composition showed significant influences on optical properties. Brightness of coated papers decreased or increased linearly as the coat weight was increased depending on the pigment composition, while opacity increased linearly for all formulations. Gloss increased abruptly at low coat weights for all formulations and approached a plateau value at coat weight of 15-20g/$m^2$. Third order polynomial regression equations relating the coat weight with gloss have been derived and tabulated.

  • PDF

Effect of Cooking Method to Fatty Acid Composition of Ground Beef (요리 방법이 쇠고기의 지방산 조성에 미치는 영향)

  • Kwak, Soon-Mi;Lee, Sook-Mi;Cho, Chung-Soon
    • Journal of the Korean Applied Science and Technology
    • /
    • v.9 no.2
    • /
    • pp.181-187
    • /
    • 1992
  • This study was designed evaluate the change of fat content according to cooking methods of ground beef. The results are summarized as follows. 1. The fat content of ground beef is the lowest in boiling cooking method. 2. The fatty-acids composition of ground beef is mainly palmitic and oleic acids. The fatty acids hardly change according to cooking methods. 3. P/S ratio is inclined to increase a bit after cooking than pre-cooking. From all the results obtained in this study it can be conclude that fat content is the lowest in boiling and microwaving cooking methods and fatty acid composition is mainly palmitic and oleic acids.

Physical and Mechanical Properties of Panels Fabricated with Particle and Fiber by Composition Types (구성형태(構成形態)에 따른 파티클과 파이버로 제조(製造)한 패널의 물리적 및 기계적 성질)

  • Yoon, Hyoung-Un;Lee, Phil-Woo
    • Journal of the Korean Wood Science and Technology
    • /
    • v.20 no.2
    • /
    • pp.9-22
    • /
    • 1992
  • The aim of this research was to investigate physical and mechanical properties of various composition panels, each fabricated with a ratio of fiber to particle of 2 to 10. Type A consisted of fiber-faces and particle-core in layered-mat system. Type B consisted of fiberboard-faces on particleboard-core. Type C consisted of fibers and particles in mixed-mat system. The results obtained from tests of bending strength, internal bond, screw holding strength and stability were as follows: 1. The bending strength and internal bonding of both the Type A panel and the Type B panel were higher than those of the Type C panel and three-layered particle board. 2. The mechanical properties of the Type C panel showed the lowest values of all composition methods. It seems that the different compression ratios of the particle and fiber interrupted the densification of the fibers when hot pressed. 3. The dimensional stability of layered-mat system panels consising of fiber-faces and particle-core was better the than control particleboard. 4. In composition methods of particle and fiber, layered-composition method was more resonable than mixed-composition. The Type B panel had the highest mechanical properties of all the composition types. 5. The Type A panel was considered the ideal composition method because of its resistance to delamination between the particle-layer and the fiber-layer and because of its lower adhesive content and more effective manufa cturing process.

  • PDF

Food Composition Database in Korea

  • Chun, Hye-Kyung;Park, Hong-Ju;Lee, Sung-Hyeon
    • Nutritional Sciences
    • /
    • v.7 no.1
    • /
    • pp.47-52
    • /
    • 2004
  • The food composition database is used to evaluate the nutritional value of foods in Korea. It is used as a source for basic data in many fields, not only for the establishment of the National Food Supply Plan but also for nutritional research, to aid in the drafting of the National Food Policy, and in clinical and epidemiological research. The database is also used by institutional and commercial food services and by the food processing industry among others. In 1970, the Rural Development Administration(RDA) published the "Korean Food Composition Table" for the first time and it has since become the established authority on food composition for the entire nation. The latest published food composition table (the 6th edition, published by the National Rural Living Science Institute, KDA) covers 2,337 kinds of foods and consists of two volumes. The National Rural Living Science Institute, the Korea Food and Drug Administration, and the National Fisheries Research and Development Institute have continuously improved production of food composition data in Korea. As consumers have grown more interested in the quality and safety of foods and raw agricultural products, we can expect even further development of food composition data through improvements in quality and increases in quantity. We need to develop more comprehensive food composition data by diversifying the kinds of foods that are included, unifying analytical methods, and increasing the number of nutrients covered. Moreover, food composition data must be modified in other ways to make for a better food composition database for the convenience of users. of users.

A Composition Check of Composite Refactorings Not Having a Specification of Precondition (선행조건이 명세되어 있지 않은 복합 리팩토링에 대한 조립성 검사)

  • Kim, Kyung-Min;Jang, Pil-Jae;Kim, Tae-Gong
    • The KIPS Transactions:PartD
    • /
    • v.18D no.1
    • /
    • pp.23-34
    • /
    • 2011
  • Refactoring has been actively used in recent software developments. Many studies on the processing of more large scaled composite refactorings have been conducted through the composition of elementary refactorings. It is important to verify the possibility of composition before the refactoring is performed, because the composite refactorings are processed to the sequence of composed elementary refactorings. In conventional studies, they verify the possibility of composition using the precondition of composite refactorings which are computed from the precondition and postcondition of elementary refactorings. They can not verify the possibility of composition in case which composite refactorings do not have a specification of precondition. Thus, we plan to verify the possibility of composition by using the elementary refactorings only without any additional definitions of the preconditions of composite refactorings. To achieve this goal, we proposes a specification method of elementary refactorings and a method for the composition check of refactorings. Then, we develop a prototype tool based on these methods. In addition, we verify the efficiency of our methods through case studies.

A Study on the Healing Environment with Architectural Spatial Composition in Healthcare Facilities - Focused on the Space Analysis of Sou Fujimoto's Healthcare Projects (의료시설 내 건축공간구성을 통한 치유환경 조성에 관한 연구 - 소우 후지모토 의료시설 사례들의 공간분석을 중심으로)

  • Jeong, Taejong
    • Journal of The Korea Institute of Healthcare Architecture
    • /
    • v.25 no.2
    • /
    • pp.17-25
    • /
    • 2019
  • Purpose: The analysis of spatial composition is required for the creation of healing environment in healthcare facilities. This study has been accomplished to provide basic data for the planning and design of hospital architecture. Methods: Literature review of healing environment and investigation on characteristics of spatial composition in healthcare facilities have been conducted. The architectural plans of four Sou Fujimoto's healthcare projects have been analyzed with space syntax. Results: The result of this research can be summarized as followed. First of all, the healing environments are consisted with architectural composition in addition to physical and psychological factors for healing environment. The second one is that the characteristics of spatial composition in Sou Fujimoto's healthcare projects are different private/public/corridor relationships in program configuration, loop or one direction circulation, combined or independent corridor with program, and radical or linear connection in spatial connection methods. The third one is that the characteristics of spatial composition in selected cases through space syntax are high variation on integration, low variation on connectivity, and high distribution in main circulation on ERAM(3). Implications: In addition to the specific spatial composition in healthcare facilities of the architect's project, it is necessary to analyze the relationship with other factors and facilities to develop the planning of hospital architecture.

The Effects of Circuit Weight Training Programs including Aquatic Exercises on the Body Composition and Serum Lipid Components of Women with Obesity

  • Kim, Gi-Won;Hwang, Ryong
    • The Journal of Korean Physical Therapy
    • /
    • v.23 no.6
    • /
    • pp.61-69
    • /
    • 2011
  • Purpose: This study investigated the changes in body composition and serum lipid composition in obese women that were caused by a 12-week circuit exercise regime including both field and aquatic activities. Methods: Subjects comprised a total of 36 women who had a BMI of more than $25kg/m^2$. The simple obesity group (n=17) had no current or past record of medical complications, whereas the group with complications (n=19) also suffered from hypertension and/or diabetes. The circuit exercise program consisted of 12 weeks of 60%HRmax exercise sessions, five days a week. Results: While changes in every variable of body composition were significant, there was no statistically significant difference in the changes in serum lipid composition variables. With the exception of BMI, the correlation between the simple/complicated groups and exercising was statistically insignificant. Conclusion: These findings suggest that while a complex circuit weight exercise program that includes aquatic exercises significantly and positively alters obese patients' body composition it does not create statistically significant changes in their serum lipid composition. It can still be concluded, however, that increasing the duration of the exercise program would be effective to influence this. Moreover, personalized exercise programs that fit the needs of the individual participants seem necessary, given that the effect of exercise on body composition and serum lipid composition was greater in patients with simple obesity than in those with complications.