• Title/Summary/Keyword: cellulose-degradation

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Metagenomic SMRT Sequencing-Based Exploration of Novel Lignocellulose-Degrading Capability in Wood Detritus from Torreya nucifera in Bija Forest on Jeju Island

  • Oh, Han Na;Lee, Tae Kwon;Park, Jae Wan;No, Jee Hyun;Kim, Dockyu;Sul, Woo Jun
    • Journal of Microbiology and Biotechnology
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    • v.27 no.9
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    • pp.1670-1680
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    • 2017
  • Lignocellulose, composed mostly of cellulose, hemicellulose, and lignin generated through secondary growth of woody plant, is considered as promising resources for biofuel. In order to use lignocellulose as a biofuel, biodegradation besides high-cost chemical treatments were applied, but knowledge on the decomposition of lignocellulose occurring in a natural environment is insufficient. We analyzed the 16S rRNA gene and metagenome to understand how the lignocellulose is decomposed naturally in decayed Torreya nucifera (L) of Bija forest (Bijarim) in Gotjawal, an ecologically distinct environment. A total of 464,360 reads were obtained from 16S rRNA gene sequencing, representing diverse phyla; Proteobacteria (51%), Bacteroidetes (11%) and Actinobacteria (10%). The metagenome analysis using single molecules real-time sequencing revealed that the assembled contigs determined originated from Proteobacteria (58%) and Actinobacteria (10.3%). Carbohydrate Active enZYmes (CAZy)- and Protein families (Pfam)-based analysis showed that Proteobacteria was involved in degrading whole lignocellulose, and Actinobacteria played a role only in a part of hemicellulose degradation. Combining these results, it suggested that Proteobacteria and Actinobacteria had selective biodegradation potential for different lignocellulose substrates. Thus, it is considered that understanding of the systemic microbial degradation pathways may be a useful strategy for recycle of lignocellulosic biomass, and the microbial enzymes in Bija forest can be useful natural resources in industrial processes.

분리균 Erwinia carotovora subsp. carotovora LY34의 병원성 및 CMCase Isozymes 생성

  • Lim, Sun-Tech;Park, Yong-Yoo;Cho, Soo-Jeong;Yun, Han-Dae
    • Microbiology and Biotechnology Letters
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    • v.25 no.5
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    • pp.468-476
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    • 1997
  • Soft-rot bacterial pathogen, Erwinia sp., was isolated from chinese cabbage tissue showing soft-rot symptom. This bacterial strain caused soft-rot to chinese cabbage and potato, and it was identified as Erwinia carotovora subsp. carotovora LY34 (E. c. subsp. carotovora LY34). Erwinia carotovora subsp. carotovora LY34 did not have hemicellulase but extracellular cellulase, pectinase, polygalacturonase, protease activity. The results of the microscopy showed that chinese cabbage tissue and potato tissue were macerated by infection of E. c. subsp. carotovora LY34. In analysis of the cellulases activity of the isolated cellulose-degradation enzymes from E. c. subsp. carotovora LY34 total protein, three cellulase activity bands were detected by non-denaturation gel electrophoresis method and five cellulase activity bands were detected by CMC-SDS-PAGE direct stain method.

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Purification and characteristics of the Polyvinyl Alcohol Oxidase from Pseucomonas cepacia G5Y (폴리비닐 말콜 분해균 Pseudomonas cepaia G5Y의 Polyvinyl alcohol oxidase 정제 및 특성)

  • 장대균;조윤래
    • Microbiology and Biotechnology Letters
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    • v.23 no.2
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    • pp.203-208
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    • 1995
  • The Polyvinyl alcohol (PVA) oxidase is a key enzyme involved in degradation of PVA with PVA hydrolase. The PVA oxidase has been purified to homogeneity from the culture broth of PVA grown Pseudomonas cepacia G5Y strain by ammonium sulfate precipitation, DEAE-cellulose column chromatography, and Sephadex G-150 gel filtration. The molecular weight of the purified enzyme was estimated about 60, 000 daltons by SDS-polyacrylamid gel electrophoresis. The enzyme is most active at 45$\circ$C and at pH 8.5, and is stable below 55$\circ$C and between pH 6 and 9. The enzyme activity was strongly inhibited by Ag$^{2+}$ and Hg$^{2+}$.

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ALKALINE HYDROGEN PEROXIDE TREATED ASPEN AS A RUMINANT FEED

  • Myung, K.H.;Kennelly, J.J.;Chung, K.C.;Kim, Y.S.
    • Asian-Australasian Journal of Animal Sciences
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    • v.1 no.4
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    • pp.195-199
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    • 1988
  • Two experiments were conducted to evaluate the nutritive value of a diet containing 20% alkaline hydrogen peroxide(AHP) treated aspen sawdust for ruminants. In experiment 1, sheep fed treated aspen(treated) had higher (p < 0.05) average daily gain and improved feed/gain ratio compared to animals fed untreated aspen (untreated), Apparent NDF and ADF digestibilities of treated aspen were higher (p < 0.05) than for untreated material. A similar trend was observed for DM, organic matter and cellulose digestibilities coefficients. In experiment 2, the soluble and degradable DM and crude protein (CP) fractions tended to increase with AHP treatment. Treatment also increased (p<0.05) the degradation rate of the degradable fraction. Results of these experiment indicate that AHP treatment results in a substantial improvement in the extent of utilization of aspen sawdust by ruminants.

Photodegradation of Paper Treated by Photostabilizer (광안정제(光安定劑)를 처리(處理)한 종이의 광열화(光劣化))

  • Kim, Bong-Yong
    • Journal of the Korean Wood Science and Technology
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    • v.23 no.3
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    • pp.23-27
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    • 1995
  • Several characteristic results of physical and optical properties of paper treated by UV light were obtained in the previous papers(Kim et al. 1988). In this paper, folding endurance and brightness of paper prepared by spraying photostabilizer were examined in order to elucidate photodegradation phenomena, UV light absorber and radical scavenger were most effective in preventing of folding endurance decrease. These results may be indicated that depolymerization of cellulose and hemicellulose chains leading to degradation of paper mechanical properties mainly caused by radical reaction. Ineffective hydroperoxide decomposer may be explained because of auto-oxidation reactions before forming stable compound from hydroperoxide.

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Control of Pierce's Disease through Degradation of Xanthan Gum

  • Lee, Seung-Don;Donald A. Cooksey
    • The Plant Pathology Journal
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    • v.20 no.1
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    • pp.1-6
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    • 2004
  • The diseases caused by Xylella fastidiosa are associated with aggregation of the bacteria m xylem vessels, formation of a gummy matrix and subsequent blockage of water uptake. In the closely related pathogen, Xanthomonas campestris, xanthan gum is known to be an important virulence factor, probably contributing to bacterial adhesion, aggregation and plugging of xylem. Xanthan gum, produced by X. campestris, is an extra-cellular polysaccharide consisting of a cellulose backbone ($\bate$-1,4-linked D-glucose) with trisaccharide side chains composed of mannose, glucuronic acid and mannose attached to alternate glucose residues in the backbone. We had constructed a mutant of X. campestris lacking gumI gene that is responsible for adding the terminal mannose for producing modified xanthan gum which is similar to xanthan gum fromX. fastidiosa. The modified xanthan gum degrading endgphytic bacterium Acineto-bacter johnsonii GX123 isolated from the oleander infected with leaf scorch disease.

Analysis of secondary reactions in concentrated sulfuric acid hydrolysis of hollocellulose by 1H-NMR spectroscopy (1H-NMR 분광분석을 통한 진한 산 가수분해 반응 2차 반응 조건 분석)

  • Lee, Jai-Sung;Shin, Soo-Jeong
    • Journal of Korea Technical Association of The Pulp and Paper Industry
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    • v.46 no.3
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    • pp.37-43
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    • 2014
  • Kinetics of holocellulose hydrolysis in concentrated sulfuric acid was analyzed using $^1H$-NMR spectroscopy with different reaction time, temperature and acid concentration in secondary hydrolysis. In this work, reaction condition of secondary hydrolysis was similar to concentrated sulfuric acid process with electrodialysis or simulated moving bed chromatography process for sulfuric acid recycling. By $^1H$-NMR spectroscopy, acid hydrolyzates from higher secondary acid hydrolysis (25-35% acid concentration) was successfully analyzed without any difficulties in neutralization or adsorption of acid hydrolyzate to solid salt. Higher acid concentration, higher temperature and longer reaction time led to more cellulose for glucose conversion but accompanied with glucose to galactose isomerization, glucose to unknown compounds and degradation of glucose to organic acid via furans.

Deterioration of Fibers and Their Products by Fungi (Part II) -Damage of Cellulosic Fabrics by Fungi- (사상균에 의한 섬유 및 섬유제품의 소화에 관하여 (제 2포) -사상균에 의한 면직물의 손해도-)

  • 김효은
    • Journal of the Korean Home Economics Association
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    • v.19 no.4
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    • pp.9-15
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    • 1981
  • damages of cotton cloth and characteristics of fabroid degradation were studied by Chaetomium globosum and Aspergillus niger which presupposed as powerful erosive fungi to cellulose fiber by means of tensile strength. The results obtained are as follows: 1. the growth(rate) of fungi in malt extract agar was superior to potato agar for two weeks. 2. Chaetomium globosum showed mostly severe damage t the cotton cloth in malt extract agar media at pH 4.5. 3. Tensile strength was reduced with time by Aspergillus niger-coenzyme and Chaetomium globosum-coenzyme reaction. In comparison with Chaetomium globosum and Aspergillus niger, the former weaken tensile strength about 15.8% and the latter enfeebled 10.0% after 124 hours. 4. after 30 days the breeding of fungi in pH 4.5 malt extract agar media, critical damage of cotton cloth was observe, I. e., 92.4% damage by chaetomium globosum and 74.9% lose by aspergillus nige respectively.

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Role of KOH in the One-Stage KOH Activation of Cellulosic Biomass

  • Oh, Gyu-Hwan;Yun, Chang-Hun;Park, Chong-Rae
    • Carbon letters
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    • v.4 no.4
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    • pp.180-184
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    • 2003
  • The role of KOH in the one-stage KOH-activation of rice straws was studied using FTIR, XPS, TGA, and DTG techniques. It was found that at the impregnation, KOH extracts to some extent the lignin component from rice straw and reacts with hydroxyl groups. On heat-treatment, the impregnated KOH facilitates intermolecular condensation reaction on one hand but retards the thermal degradation of cellulose molecules on the other hand. The oxygen-containing surface functional groups newly created by oxidation of KOH may facilitate the bulk, not controlled, consumption of carbon atoms so that the effective porosities may not be able to be developed by the one-stage activation process.

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A review on the softening of the fermented vegetables and the fruits (침채류와 과실의 연화현상에 관한 고찰)

  • 이희섭
    • Journal of the Korean Home Economics Association
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    • v.34 no.4
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    • pp.403-414
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    • 1996
  • The softening of the femented vegetables and the fruits was resulted from the degradation of pectin substances, cellulose, hemicellulose by polygalacturonase(PG), pectinesterase(PE), Cx-cellulase, $\beta$-galctosidase. The conversion of insoluble pectin to soluble pectin in cell wall-middle lamella was a major factor in the changes of firmness. Ca2+ was substantially increased firmness. However, Ca2+ could be removed from cell wall by chelating agents such as oxalic acid and citric acid. And Ca2+ was replaced with Na+ by ion exchange reaction. Ca2+ deficient tissue was vulnerable to attack by PG. Preheating treatment and Ca2+ addition is most effective in inhibiting the vegetable food softening and in increasing middle lamella-cell wall regidity, which PE activation by preheating treatment and Ca2+ addition could created more anionic carboxyl groups for cationic materials binding such as Ca2+ and chitosan and for polypectategel formation. Excessive demethylation by PE was associated with loosening of middle lamella cell wall components and softening.

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