• 제목/요약/키워드: cDNA representational difference analysis

검색결과 7건 처리시간 0.039초

Porphyromonas Gingivalis Lipopolysaccharide Increases Monocyte Adhesion to Microvascular Endothelium by Induction of Adhesion Molecules

  • Kim, Su-Ryun;Park, Hyun-Joo;Bae, Soo-Kyung;Park, Ji-Hyun;Kim, Hyo-Sun;Koo, Tae-Hyeon;Bae, Moon-Kyoung
    • International Journal of Oral Biology
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    • 제33권4호
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    • pp.149-154
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    • 2008
  • Porphyromonas gingivalis, a major periodontal pathogen, has been implicated in the initiation and progression of periodontal disease. Endothelial dysfunction (Editor note: Aberrant and dysfunction are somewhat redundant. The authors may want to choose one or the other.) contributes to chronic periodontal inflammation. Using cDNA-representational difference analysis, we found that P.gingivalis lipopolysaccharide differentially induces a number of genes in human microvascular endothelial cells. Among these upregulated genes, we focused on intercellular adhesion molecule-1 (VCAM-1), which is crucial for leukocyte recruitment during vascular inflammation. P. gingivalis LPS significantly increased the expression of vascular cell adhesion molecule-1 (VCAM-1) as well as ICAM-1. Promoter assays revealed that the transcription of these cell adhesion molecules was mainly regulated by nuclear factor-${\kappa}B$ (NF-${\kappa}B$) in endothelial cells. Furthermore, P. gingivalis LPS significantly increased leukocyte adhesiveness to microvascular endothelial cells and to aortic endothelium. Taken together, our results demonstrate that P. gingivalis LPS activates microvascular endothelial cells through NF-${\kappa}B$-dependent expression of cell adhesion molecules.

DnaJC18, a Novel Type III DnaJ Family Protein, is Expressed Specifically in Rat Male Germ Cells

  • Gomes, Cynthia;Soh, Jaemog
    • 한국발생생물학회지:발생과생식
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    • 제21권3호
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    • pp.237-247
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    • 2017
  • Mammalian spermatogenesis occurs in a precise and coordinated manner in the seminiferous tubules. One of the attempts to understand the detailed biological process during mammalian spermatogenesis at the molecular level has been to identify the testis specific genes followed by study of the testicular expression pattern of the genes. From the subtracted cDNA library of rat testis prepared using representational difference analysis (RDA) method, a complimentary DNA clone encoding type III member of a DnaJ family protein, DnaJC18, was cloned (GenBank Accession No. DQ158861). The full-length DnaJC18 cDNA has the longest open reading frame of 357 amino acids. Tissue and developmental Northern blot analysis revealed that the DnaJC18 gene was expressed specifically in testis and began to express from postnatal week 4 testis, respectively. In situ hybridization studies showed that DnaJC18 mRNA was expressed only during the maturation stages of late pachytene, round and elongated spermatids of adult rat testis. Western blot analysis with DnaJC18 antibody revealed that 41.2 kDa DnaJC18 protein was detected only in adult testis. Immunohistochemistry study further confirmed that DnaJC18 protein, was expressed in developing germ cells and the result was in concert with the in situ hybridization result. Confocal microscopy with GFP tagged DnaJC18 protein revealed that it was localized in the cytoplasm of cells. Taken together, these results suggested that testis specific DnaJC18, a member of the type III DnaJ protein family, might play a role during germ cell maturation in adult rat testis.

Cloning and characterization of the multiprotein bridging factor 1 (YIMBFI) gene from the dimorphi yeast Yarrowia lipolytica

  • Kim, Jeong-Yoon;Kim, Jang-Hwan;Cheon, Seong-Ah;Yunkyoung Song
    • Journal of Microbiology
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    • 제40권2호
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    • pp.173-177
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    • 2002
  • In order to identify Yawowia lipolytica genes induced by serum, cDNA representational difference analysis was performed using a PCR-select CDNA subtraction method. One of the genes cloned from the subtraction was a gene (YIMBFl) homologous to Saccharomyces cerevisiae MBF1 encoding the coactivator multiprotein bridging factor 1. Disruption of YIMBFl revealed that the gene was net essential for viability, and the Ylmbf△ strain did not show any distinct phenotypic change on solid serum medium. In liquid medium, however. a difference was found in the ability to maintain hyphae induced by serum. This result suggests that the YIMbf1 protein may mediate transcriptional activation of certain genes involved in the hypha fonmation of Y. lipolytica.

흰쥐 성상세포에서 산소농도의존성 유전자의 분리 (Isolation of a Hypoxia/Reoxygenation Regulatory Factor in Rat Astrocytes)

  • 박정애;송현석;이혜신;김규원
    • 약학회지
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    • 제50권2호
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    • pp.124-128
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    • 2006
  • Astrocyte has emerged as an active regulator of brain function, which connects between blood vessels and neurons as well as is a structural component of the blood-brain barrier, From its structural characteristics, astrocyte seems to sensitively respond to oxygen tension, and, in turn, generate diverse cellular cascades. Therefore, to reveal astrocytlc events by oxygen change, we screened genes whose expressions are upregulated under reoxygenation after hypoxic stress using cDNA representational difference analysis (RDA) technique. Meteorin that regulates glial differentiation was isolated from primary cultured rat astrocytes as a hypoxia/reoxygenation regulatory factor. We cloned rat version of Meteorin (rMe-teorin) and determined full-size sequences of rMeteorin. In addition, RT-PCR analysis revealed that Meteorin was increased under reoxygenation in astrocytes and highly expressed in the developing brain. Collectively, these results suggest that Meteorin may regulate astrocyte-mediated effects in response to the change of oxygen tension in the pathophysiological states.

인체세포주에서 저선량 $^{99m}Tc$에 의해 발현되는 방사선 적응반응에 관련된 유전자에 관한 연구 (Genes Associated with Radiation Adaptive Response Induced by Low Level Radiation from $^{99m}Tc$ in Human Cell Lines)

  • 권안성;범희승;최찬;김지열;임욱빈
    • 대한핵의학회지
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    • 제35권5호
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    • pp.313-323
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    • 2001
  • 목적: 저선량 방사선에 의해 그 이후의 고선량 방사선에 저항이 생기는 유익한 반응을 보인다는 방사선적응반응이라는 현상이 알려져 있지만, 저선량 방사선이 어떤 기작에 의해 이런 반응을 일으키는지에 대해서는 아직 알려지지 않고 있다. 본 연구에서는 정상 인체세포주에서 저선량 $^{99m}Tc$에 의해 방사선적응반응이 유도되는지를 확인하고, 이 때 활성화되는 유전자를 찾아보고자 하였다. 대상 및 방법: 인체 정상 림프구 세포주인 NC-37 세포주 $2{\times}10^6mL$개의 세포에 $^{99m}Tc$을 148 MBq/mL로부터 148 Bq/mL의 농도가 되도록 10배씩 희석하여 첨가하고 44시간동안 배양하였다. 결과: 각각의 군에 대해 이상 염색체를 계수하여 148 KBq/mL의 $^{99m}Tc$을 첨가한 군에서 방사선적응반응이 가장 현저하게 유도되었음을 확인하였다. 이 세포군에서 mRNA를 추출하고 여기에서 cDNA를 만든 후 gene discovery array (GDA) 여과기를 이용하여 대조군에 비해 발현이 증가된 casein kinase II beta chain, immunoglobulin, HLA-B 그리고 아직 알려지지 않은 2개의 유전자 등 6개의 유전자를 찾아내었다. Representational difference analysis (RDA)법을 통해서는 대조군에 비해 발현이 증가된 유전자 클론을 20개 찾아내었다. 결론: 인체세포주 NC-37에서 저선량의 $^{99m}Tc$에 의해 방사선적응반응이 유도된다는 사실을 밝혔으며, 이때 다수의 유전자가 발현된다는 사실을 알 수 있었다.

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