• 제목/요약/키워드: bisulfite

검색결과 101건 처리시간 0.018초

FRET-Based Quantitative Discrimination of Bisulfite-Untreated DNA from Bisulfite-Treated DNA

  • Lee, Eun Jeong;Cho, Yea Seul;Song, Seongeun;Hwang, Sang-Hyun;Hah, Sang Soo
    • Bulletin of the Korean Chemical Society
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    • 제35권5호
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    • pp.1455-1459
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    • 2014
  • We report a sensitive and reliable FRET-based nanotechnology assay for efficient detection and quantification of bisulfite-unmodified or modified DNA. Bisulfite-untreated DNA or bisulfite-treated DNA is subjected to PCR amplification with biotin-conjugated primers so that the amounts of bisulfite-untreated and treated DNA can be differentiated. Streptavidin-coated quantum dots (QDs) are used to capture biotinylated PCR products intercalated with SYBR Green, enabling FRET measurement. Key features of our method include its low intrinsic background noise, high resolution, and high sensitivity, enabling detection of as little as 1.75 ng of bisulfite-untreated DNA in the presence of an approximately 1,000-fold excess of bisulfite-untreated DNA compared to bisulfate-treated DNA, with the use of PCR reduced (as low as 15 cycles). SYBR Green as an intercalating dye as well as a FRET acceptor allows for a single-step preparation without the need for primers or probes to be chemically conjugated to an organic fluorophore. Multiple acceptors per FRET donor significantly enhance the signal-to-noise ratio as well. In consideration of the high relevance of bisulfite treatment to DNA methylation quantitation, our system for FRET measurement between QDs and intercalating dyes can be generally utilized to analyze DNA methylation and to potentially benefit the scientific and clinical community.

이온크로마토그래피를 이용한 Sodium bisulfite 수용액 중의 미량 요오드 정량 (Determination of Trace Iodide in Sodium Bisulfite Aqueous Solution by Ion Chromatography with UV Detection)

  • 박양순;김도양;최광순;박순달;한선호
    • 분석과학
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    • 제13권3호
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    • pp.304-308
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    • 2000
  • 모의사용후핵연료로부터 sodium bisulfite 수층에 회수된 요오드($I^-$)를 이온크로마토그래피법을 이용해 정량할 때, 0.1 M sodium bisulfite와 1 mM 질산의 영향 없이 미량 오오드(1ppm)를 정량하기 위한 방법을 검토하였다. AS4A-SC(DIONEX) 컬럼과 자외선검출기를 사용하였고 sodium bisulfite, 질산 및 요오드의 자외선 흡광도를 측정하여 요오드 정량에 적합한 흡수파장으로 230nm를 선택하였고 용리액 농도는 0.1 M NaCl이 효율적이었다. 이 조건에서 0-1,000ppb 범위의 검정곡선을 작성하였다. 이때 선형상환계수는 0.99993 이었으며 검출한계는 5 ppb였다. 상대표준편차는 1.26% 이었다.

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소나무 수피(樹皮)의 총합적(總合的) 이용(利用)(II) -Mg- 및 Na-base 산성(酸性) 아황산염(亞黃酸鹽) 증해(蒸解) 특성(特性)- (Utilization of Pine Bark(II) -Characterization of Mg- and Na-base Acid Sulfite Cooking-)

  • 문성필;김재필
    • Journal of the Korean Wood Science and Technology
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    • 제22권1호
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    • pp.34-39
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    • 1994
  • Effects of Mg-base acid sulfite and Mg- or Na-base bisulfite on pine bark cooking were examined. In the presence of 75 % free acid at 145 $^{\circ}C$, the rate of cooking and delignification was improved with the increase of total acid. However, the delignification could not be achieved by 50 % or more under these cooking conditions. When cooked with 50~65 % free acid and at 155~165 $^{\circ}C$, the rate of cooking and delignification was remarkably improved. Thus, the bark was delignified up to 73 % when cooked for 2 hours in the presence of 50 % free acid and 24 % total acid. Na-base bisulfite was slightly more effective than Mg-base bisulfite for cooking, giving 76 % delignification of pine bark. However, there was no significant difference in selectivity of delignification between Na- and Mg-base bisulfite cooking.

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A Visualization Tool for Computational Analysis of DNA Methylation Level Using Bisulfite Sequencing Data

  • Tae, Hong-Seok
    • Genomics & Informatics
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    • 제9권3호
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    • pp.136-137
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    • 2011
  • Methylation of cytosine is a post-synthesis modification that does not affect the primary DNA sequence but greatly influences gene expression level and phenotypes of an organism. As high-throughput sequencing of bisulfite-treated DNA is the most efficient method to identify methylated sites, several tools to map sequencing reads on a reference are available. But tools to visualize and to interpret the methylation level of methylation sites are currently insufficient. Herein, we present a novel tool to visualize the methylation level of CpG sites.

A Study of Characteristics Variation of Thermally Expandable Microspheres in Post-polymerization Treatment by Various Initiators

  • You, Hae Na;Kim, Ji Hoo;Kim, Myeong Woo;Kim, Keon Il;Park, Hyun Duk
    • Elastomers and Composites
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    • 제52권3호
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    • pp.211-215
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    • 2017
  • Thermally expandable microspheres were used as post-treatment initiators of potassium persulfate, sodium bisulfite, and sodium sulfide in order to improve the foaming ability and whiteness when foaming a mixture of thermally expandable microsphers and poly(vinyl chloride). Potassium persulfate showed no significant influence on the foaming behavior, foam expansion, whiteness, and yellowing, whereas in the case of using sodium bisulfite. In particular, sodium bisulfite demonstrated the best efficiency with 2 wt% treatment. The thermally expandable microspheres prepared herein can provide excellent foamability and whiteness, and are expected to be applicable in various fields such as general coating and wallpaper.

Sulfite 염에 의한 저염 명란젓의 보존 효과 (The Effects of Sulfite Salts on the Shelf-life of Low-salted Myungranjeot (Soused Roe of Alaska Pollack))

  • 김상무
    • 한국식품과학회지
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    • 제28권5호
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    • pp.940-946
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    • 1996
  • 저염 명란젓에 sulfite 염을 첨가하여 숙성 중에 일어나는 여러 가지 화학적 및 미생물 변화를 측정하여 저염 젓갈의 shelf-life에 미치는 결과를 요약하면 다음과 같다. Bisulfite 및 metasulfite 명란젓은 숙성초기에 pH가 급격하게 감소하였다가 그 후 서서히 감소하였으며 젖산 생성량도 증가하였다. 숙성이 진행됨에 따라 아미노태 질소량은 감소 경향을 나타내었으며 metasulfite 명란젓이 가장 높은 생성량을 나타내었다. Bisulfite와 metasulfite의 첨가는 숙성 후기의 VBN 및 TMA 생성 억제에 효과적이었으며, 숙성 초기의 TBA 생성을 억제하였다. Bisulfite 및 metasulfite는 fungi를 포함한 미생물의 성장을 현저하게 저해하였다. Sulfite 염 첨가시의 추정되는 shelf-life는 대조군, sulfate, bisulfite및 metasulfite인 경우 각각 16, 14, 20 및 24일이었다.

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Synthesis of Wood Adhesive Derived from the Milk Protein and the Blocked Isocyanate

  • Ha, Yuna;Lee, Sang-Min;Lee, Hyang-Yeol
    • 한국응용과학기술학회지
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    • 제30권3호
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    • pp.551-559
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    • 2013
  • To investigate the adhesion effect of sodium bisulfite content in making blocked isocyanate, wood adhesive PB-1, PB-2, PB-3 and PB-4 containing sodium bisulfite content of 15%, 22.5%, 30% and 37.5% were synthesized respectively. As a result, when the amount of sodium bisulfite increased in adhesives, the tensile strength was found to be proportionally increased. The final adhesive mixtures were manufactured using a two-components system which are prepared by mixing two separate protein and BI solutions due to the precipitate in the adhesives. As PVA was added to adhesives to increase tenacity, the plywood dehiscence phenomenon after cold pressing process was declined. By addition of PVA, the tensile strength was improved up to $6.5{\sim}7kgf/cm^2$ with BI/protein ratio from 1:6 up to 1:8. Phase separation between milk fat and aqueous layer was disappeared after addition of emulsifier, Tween 20. Additon of Tween 20 showed tensile strength up to $5{\sim}6.5 kgf/cm^2$ at NCO/protein ratio of 1:12 ~ 1:14 without phase separation.

Ultrasound Mediated, Sodium Bisulfite Catalyzed, Solvent Free Synthesis of 6-Amino-3-methyl-4-substitued-2,4-dihydropyrano[2,3-c]pyrazole-5-carbonitrile

  • Darandale, Sunil N.;Sangshetti, Jaiprakash N.;Shinde, Devanand B.
    • 대한화학회지
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    • 제56권3호
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    • pp.328-333
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    • 2012
  • A simple, convenient and practical green synthetic protocol for sodium bisulfite catalyzed multicomponent reaction of ethyl acetoacetate, hydrazine hydrate, malononitrile, and various aldehydes for the synthesis of 6-amino-4-phenyl-3-methyl-2,4-ihydropyrano[2,3-c]pyrazole-5-carbonitriles using ultrasound irradiations in solvent free condition. This method provides the advantage of operational simplicity, shorter reaction time and excellent yields making the protocol environment friendly and economically lucrative.

Identification of a Sequence Containing Methylated Cytidine in Corynebacterium glutamicum and Brevibacterium flavum Using Bisulfite DNA Derivatization and Sequencing

  • Jang, Ki-Hyo;Chambers, Paul J.;Britz, Margaret L.
    • Journal of Microbiology and Biotechnology
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    • 제11권5호
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    • pp.819-824
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    • 2001
  • The principal DNA modification systems of the amino-acid-producing bacteria Corynebacterium glutamicum AS019, Brevibacterium flavum BF4, and B. lactofermentum BL1 was investigated using two approaches; digestion of plasmid DNA isolated from these species TseI and Fnu4HI, and sequence analysis of the putative methyltransferase target sites following the derivatization of DNA using metabisulfite treatment. The C. glutamicum and B. flavum strains showed similar digestion patterns to the two enzymes, indicating that the target for cytidine methyltransferase recognizes 5'-GCSGC-3'(where S is either G or C). Mapping the methylated cytidine sites by bisulfite derivatization, followed by PCR amplification and sequencing, was only possible when the protocol included an additional step eliminating any underivatized DNA after PCR amplification, thereby indicating that the derivatization was not $100\%$ efficient. This may have been due to the high G0C content of this genus. It was confirmed that C. glutamicum AS019 and B. flavum BF4 methylated the cytidine in the $Gm^5CCGC$ sequences, yet there were no similar patterns of methylation in B. lactofermentum, which was consistent with the distinctive degradation pattern seen for the above enzymes. These findings demonstrate the successful application of a modified bisulfite derivatization method with the Corynebacterium species for determining methylation patterns, and showed that different species in the geneus contain distinctive restriction and modification systems.

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Physcial and Fiber Properties of TMP and CTMP from Kenaf Cultivated at Reclaimed Land of Korea

  • Yoon, Seung-Lak;Kojima, Yasuo;Cho, Dong-Ha;Kim, Nam-Hum;Kim, Min-Joong;Lee, Myoung-Ku
    • 한국펄프종이공학회:학술대회논문집
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    • 한국펄프종이공학회 2006년도 PAN PACIFIC CONFERENCE vol.2
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    • pp.373-379
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    • 2006
  • Fiber characteristics and fiber distribution of thermomechanical pulp(TMP), bisulfite chemithermomechanical pulp(bisulfite CTMP), neutral sulfite chemithermomechanical pulp(neutral sulfite CTMP) from kenaf(Hibiscus cannabinus L., Malvaceae) cultivar Tainug-2 cultivated in the reclaimed land of Korea were examined to use effectively nonwood fibers as an alternative raw material sources for papermaking. Yields of TMP and CTMP from kenaf were lower than those of TMP from hardwoods and CTMP from softwoods and hardwoods. Bark fibers of kenaf cultivar Tainung-2 ranged 2.04 to 2.30 mm long and $18.7{\sim}19.7{\mu}m$ width. Core fibers averaged 0.63 to 0.80 mm long and $29.5{\sim}31.4{\mu}m$ wide. Coarseness of bark fiber was higher than that of core fiber, and fiber from TMP were higher than those from both bisulfite CTMP and neutral sulfite CTMP. Curl indexes of bark fibers were higher than those of core fibers. However curl indexes were not significantly affected by the pulping conditions. Short fiber distributions were higher in core fibers from TMP and CTMP and long fiber distributions were higher in bark fibers. There was no significant difference in fiber distribution of whole and core fibers obtained from TMP and CTMP, Fibers from neutral sulfite CTMP, however, exhibited a little higher long fiber distribution. Distinct difference in anatomical characteristics was found between core and bast fibers of kenaf plant. Parenchyma cell, pith parenchyma cell and vessel were observed in core fibers and bast fiber in bast sections.

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