• 제목/요약/키워드: biological sample

검색결과 932건 처리시간 0.023초

Analysis of Bacterial Diversity and Communities Associated with Tricholoma matsutake Fruiting Bodies by Barcoded Pyrosequencing in Sichuan Province, Southwest China

  • Li, Qiang;Li, Xiaolin;Chen, Cheng;Li, Shuhong;Huang, Wenli;Xiong, Chuan;Jin, Xing;Zheng, Linyong
    • Journal of Microbiology and Biotechnology
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    • 제26권1호
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    • pp.89-98
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    • 2016
  • Endophytes play an important role in the growth and development of the host. However, the study of endophytes is mostly focused on plants, and reports on bacteria associated with fungi are relatively rare. We studied the bacteria associated with fruiting bodies of Tricholoma matsutake picked from seven main T. matsutake-producing areas in Sichuan, China, by barcoded pyrosequencing. About 8,272 reads were obtained per sample, representing 40 phyla, 103 classes, and 495 genera of bacteria and archaea, and 361-797 operational taxonomic units were observed at a 97% similarity level. The bacterial community was always both more abundant and more diverse than the archaeal community. UniFrac analysis showed there were some difference of bacterial communities among the samples sites. Three bacterial phyla, Proteobacteria, Bacteroidetes, and Firmicutes, were dominant in all samples. Correlation analysis showed there was a significant correlation between some soil properties and bacterial community associated with T. matsutake. This study demonstrated that the bacteria associated with T. matsutake fruiting bodies were diversified. Among these bacteria, we may find some strains that can promote the growth of T. matsutake.

Evaluation of sensitivity of soil respiration to temperature in different forest types and developmental stages of maturity using the incubation method

  • Lee, Eun-Hye;Suh, Sang-Uk;Lee, Chang-Seok;Lee, Jae-Seok
    • Journal of Ecology and Environment
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    • 제35권1호
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    • pp.1-7
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    • 2012
  • To calculate and predict soil carbon budget and cycle, it is important to understand the complex interrelationships involved in soil respiration rate (Rs). We attempted to reveal relationships between Rs and key environmental factors, such as soil temperature, using a laboratory incubation method. Soil samples were collected from mature deciduous (MD), mature coniferous (MC), immature deciduous (ID), and immature coniferous (IC) forests. Prior to measure, soils were pre-incubated for 3 days at $25^{\circ}C$ and 60% of maximum water holding capacity (WHC). Samples of gasses were collected with 0, 2, and 4 h interval after the beginning of the measurement at soil temperatures of 5, 15, 25, and $35^{\circ}C$ (at 60% WHC). Air samples were collected using a syringe attached to the cap of closed bottles that contained the soil samples. The $CO_2$ concentration of each gas sample was measured by gas chromatography. Rs was strongly correlated with soil temperature (r, 0.93 to 0.96; P < 0.001). For MD, MC, ID, and IC soils taken from 0-5 cm below the surface, exponential functions explained 90%, 82%, 92%, and 86% of the respective data plots. The temperature and Rs data for soil taken from 5-10 cm beneath the surface at MD, MC, ID, and IC sites also closely fit exponential functions, with 83%, 95%, 87%, and 89% of the data points, respectively, fitting an exponential curve. The soil organic content in mature forests was significantly higher than in soils from immature forests (P < 0.001 at 0-5 cm and P < 0.005 at 5-10 cm) and surface layer (P = 0.04 at 0-5 cm and P = 0.12). High soil organic matter content is clearly associated with high Rs, especially in the surface layer. We determined that the incubation method used in this study have the possibility for comprehending complex characteristic of Rs.

Synchrotron-based Transmission X-ray Microscopy (TXM) Observations of Fully Hydrated Blood Platelets and Their Activation Process

  • Yang, Nuri;Nho, Hyun Woo;Kalegowda, Yogesh;Kim, Jin Bae;Song, Jaewoo;Shin, Hyun-Joon;Yoon, Tae Hyun
    • Bulletin of the Korean Chemical Society
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    • 제35권9호
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    • pp.2625-2629
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    • 2014
  • Platelets are anuclear discoid-shaped blood cells with key roles in human body. To understand the mechanisms of their activation process, it is required to have analytical imaging techniques capable of acquiring platelet images under fully hydrated conditions. Herein, for the first time, we demonstrate the capability of synchrotron-based transmission X-ray microscopy (TXM) to study platelets (resting and ADP activated) under hydrated and air-dried conditions. To confirm the biological imaging capability of TXM, fixed platelets were imaged and compared with whole mount electron microscopy (EM) images. TXM provided morphological information with sufficient spatial resolution with simple and quick sample preparation procedure. We also observed temporal changes during the platelet activation, which initially had a discoid shape (0 s), formed pseudopodia (30 s) and generated a network of fibrin (5 min). Our results clearly demonstrate the potential of TXM technique to study fully hydrated biological samples under in situ conditions.

대면적 대기압 플라즈마-용액 시스템을 이용한 폴리프로필렌 표면 처리 (Surface Treatment of Polypropylene using a Large Area Atmospheric Pressure Plasma-solution System)

  • 트란꺽시;최호석
    • Korean Chemical Engineering Research
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    • 제49권3호
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    • pp.271-276
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    • 2011
  • 대면적 대기압 플라즈마 반응 장비를 플라즈마-용액 시스템에 적용하여 액상 내부에 잠입된 폴리프로필렌(PP) 필름의 표면손상 없이 관능기 도입 가능성을 탐색하였다. 액상으로 1-butyl-3-methylimidazolium tetrafluoroborate: $[BMIM]^{+}[BF_{4}]^{-}$ 이온성 액체 수용액을 사용한 경우, 안정적으로 플라즈마를 발생시킬 수 있었다. PP 필름의 플라즈마 처리 결과, PP 표면에 다양한 산소 함유 관능기들이 도입되었음을 확인할 수 있었다. 플라즈마 처리 후 PP의 표면 자유에너지는 처리시간, 전압의 증가에 따라서 증가하며, 1.5M 이온성 액체 수용액 농도에서 가장 큰 값을 나타내었다. ATR-FTIR 분석 결과, 다양한 카르보닐 기(1,726 $cm^{-1}$, 1,643 $cm^{-1}$)와 하이드록시 기$(3,100{\sim}3,500\;cm^{-1})$의 흡광도가 증가하였고, XPS 분석은 ATR-FTIR 분석 결과를 뒷받침하여 주었다.

욕창 분류체계교육프로그램이 병원간호사의 욕창 분류체계와 실금관련 피부염에 대한 지식과 시각적 감별 능력에 미치는 효과 (Effects of Pressure Ulcer Classification System Education Program on Knowledge and Visual Discrimination Ability of Pressure Ulcer Classification and Incontinence-Associated Dermatitis for Hospital Nurses)

  • 이윤진;박승미
    • Journal of Korean Biological Nursing Science
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    • 제16권4호
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    • pp.342-348
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    • 2014
  • Purpose: The purpose of this study was to examine the effects of pressure ulcer classification system education on hospital nurses' knowledge and visual discrimination ability of pressure ulcer classification system and incontinence-associated dermatitis. Methods: One group pre- and post-test was used. A convenience sample of 96 nurses participating in pressure ulcer classification system education, were enrolled in single institute. The education program was composed of a 50-minute lecture on pressure ulcer classification system and case-studies. The pressure ulcer classification system and incontinence-associated dermatitis knowledge test and visual discrimination tool, consisting of 21 photographs including clinical information were used. Paired t-test was performed using SPSS/WIN 18.0. Results: The overall mean difference of pressure ulcer classification system knowledge (t=4.67, p<.001) and visual discrimination ability (t=10.58, p<.001) were statistically and significantly increased after pressure ulcer classification system education. Conclusion: Overall understanding of pressure ulcer classification system and incontinence-associated dermatitis after pressure ulcer classification system education was increased, but tended to have lack of visual discrimination ability regarding stage III, suspected deep tissue injury. Differentiated continuing education based on clinical practice is needed to improve knowledge and visual discrimination ability for pressure ulcer classification system, and comparison experiment research is required to evaluate its effects.

Insecticidal Activity of Bacillus thuringiensis 656-3 Strain to Mushroom Flies in Oyster Mushroom House

  • Park, Yong-Soo;Kang, Young-Jin;Lee, Kwang-Sik;Jianhong Le;Je, Yeon-Ho;Roh, Jong-Yul;Seo, Sook-Jae;Sohn, Hung-Dae;Jin, Byung-Rae
    • International Journal of Industrial Entomology and Biomaterials
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    • 제8권1호
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    • pp.61-66
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    • 2004
  • Bacillus thuringiensis 656-3 which was isolated from a soil sample of mushroom house and showed high toxicity to mushroom flies, Lycoliella mali and Coboldia fuscipes, was surveyed for insecticidal effect in the oyster mushroom house.3. thutingiensis 656-3 was mass-cultured in the fermenter containing soybean cake(2%) and wheat bran (2%) as media source. Semi-for-mutation of B. thuringiensis 656-3 was performed with metamorphic starch only. When the formulation suspension containing $5{\times}{10^7}$ cfu was sprayed on the mushroom in mushroom house, the insecticidal effect of B. thuringiensis 656-3 to mushroom flies,1. mali and C. fuscipes, was maintained over 90% by the fifth day after starting spraying. The yield of oyster mushroom house with B. thuringiensis 656-3 was significantly increased compared to control. B. thuringiensis 656-3 represents a powerful biological insecticide for the control of mushroom flies.

생체조직내 레이저 광 밀도 향상을 위한 압력 인가형 저출력 레이저 프로브 (A Pressure Applied Low-Level Laser Probe to Enhance Laser Photon Density in Soft Tissue)

  • 여창민;박정환;손태윤;이용흠;정병조
    • 대한의용생체공학회:의공학회지
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    • 제30권1호
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    • pp.18-22
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    • 2009
  • Laser has been widely used in various fields of medicine. Recently, noninvasive low-level laser therapeutic medical devices have been introduced in market. However, low-level laser cannot deliver enough photon density to expect positive therapeutic results in deep tissue layer due to the light scattering property in tissue. In order to overcome the limitation, this study was aimed to develop a negative pressure applied low-level laser probe to optimize laser transmission pattern and therefore, to improve photon density in soft tissue. In order to evaluate the possibility of clinical application of the developed laser probe, ex-vivo experiments were performed with porcine skin samples and laser transmissions were quantitatively measured as a function of tissue compression. The laser probe has an air suction hole to apply negative pressure to skin, a transparent plastic body to observe variations of tissue, and a small metallic optical fiber guide to support the optical fiber when negative pressure was applied. By applying negative pressure to the laser probe, the porcine skin under the metallic optical fiber guide is compressed down and, at the same time, low-level laser is emitted into the skin. Finally, the diffusion images of laser in the sample were acquired by a CCD camera and analyzed. Compared to the peak intensity without the compression, the peak intensity of laser increased about $2{\sim}2.5$ times and FWHM decreased about $1.67{\sim}2.85$ times. In addition, the laser peak intensity was positively and linearly increased as a function of compression. In conclusion, we verified that the developed low-level laser probe can control the photon density in tissue by applying compression, and therefore, its potential for clinical applications.

탄닌함량에 따른 도토리전분의 물리화학적 특성 (Effect of tannin contents on the physicochemical characteristics of acorn starch)

  • 안호경;최형택;김병용;오두환
    • Applied Biological Chemistry
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    • 제33권4호
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    • pp.301-306
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    • 1990
  • 탄닌함량이 도토리전분의 물리화학적 성질에 미치는 영향을 탄닌함량을 달리한 도토리전분에서 비교 검토하였다. 탈탄닌 처리에 따른 전분 표면의 손상은 관찰되지 않았으며 탄닌함량은 도토리전분의 호화개시온도에는 영향을 미치지 않았으나 최고점도값에는 영향을 미치는 것으로 관찰되었다. 모든 시료전분의 유동거동지수값은 1보다 작았고(0$2.19{\sim}2.69Kcal/g\;{\cdot}\;mol$, 탈탄닌전분이 $2.31{\sim}3.33Kcal/g\;{\cdot}\;mol$, 탈지 및 탈탄닌전분이 $2.09{\sim}3.58Kcal/g\;{\cdot}\;mol$이었다. 전분호화액의 시간 의존성에서는 전분시료 모두 전단속도의 연속적인 증가와 감소에 따라 전단응력이 변화하는 thixotropic 거동을 보여주었으며 두개의 유동곡선은 서로 일치하고 않고 hysteresis loop을 형성하였다.

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지방함량 변화에 따른 도토리전분의 이화학적 특성 (Effect of lipid contents on the physicochemical characteristics of acorn starch)

  • 안호경;길훈배;유해의;오두환
    • Applied Biological Chemistry
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    • 제33권4호
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    • pp.293-300
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    • 1990
  • 토토리전분의 지방합량 변화에 따른 이화학적 성질 변화를 건조전분, 탈지전분 및 지방산재첨가전분을 제조하여 비교 검토하였다. 탈지와 지방산재첨가에 의한 전분 표면의 손상은 관찰되지 않았으며 건조전분, 탈지전분 및 지방산재첨가전분의 팽화력과 용해도는 측정온도 범위내에서 비슷한 경향을 보이며 증가하였으나 지방산재첨가전분의 경우 두 전분에 비해 그 값이 낮았다. 호화양상의 경우 전처리 조작에 따른 호화개시온도에는 변화가 없었으나 최고점도값과 breakdown값에는 영향이 있는 것으로 관찰되었다. 전분의 유동형태는 시료전분 모두 유동거동지수값이 1보다 작고(0$2.19{\sim}2.69Kcal/g\;{\cdot}\;mol$, 탈지전분이 $2.79{\sim}3.75Kcal/g\;{\cdot}\;mol$, 지방산재첨가전분이 $1.70{\sim}2.11Kcal/g\;{\cdot}\;mol$이었다.

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중환자실 내 가습기의 소독방법과 시간적 경과에 따른 균집락 수 (Colony Counts by Different Disinfecting Processes and Operating Time for Humidifiers in an Intensive Care Unit)

  • 박순미;정인숙;장철훈;이영순
    • Journal of Korean Biological Nursing Science
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    • 제11권1호
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    • pp.92-98
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    • 2009
  • Purpose: This study was aimed to investigate the colony counts by different disinfecting processes and duration of the operation for humidifiers in an intensive care unit (ICU) in Busan. Method: The four steps of disinfecting process were taken with four different humidifiers according to the use of disinfectant (1:100 $Deconex^{(R)}$ 50FF/nothing) and refilling water (tap water/distilled water). First, the colony counts using water sample from wick was conducted at 0 hr, 24 hr, and 48 hr respectively after turning on the humidifiers. Next, the colony counts using waterdrop from the outlet was done at 0 hr, 24 hr, 48 hr, and 72 hr respectively after turning on the humidifiers. Result: No colony was counted after disinfecting with 1:100 $Deconex^{(R)}$ 50FF until 72 hr after turning on the humidifiers. However, without disinfecting with $Deconex^{(R)}$ 50FF, the colony count was increased in the humidifiers from 24 hr after turning on the humidifiers. The result was the same regardless of the refilling water. Conclusion: According to the results, the study found that disinfection of humidifiers in the ICUs with 1:100 $Deconex^{(R)}$ 50FF every 72 hr is effective to remove general bacteria.

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