• Title/Summary/Keyword: biological sample

Search Result 933, Processing Time 0.028 seconds

Analysis of Bacterial Diversity and Communities Associated with Tricholoma matsutake Fruiting Bodies by Barcoded Pyrosequencing in Sichuan Province, Southwest China

  • Li, Qiang;Li, Xiaolin;Chen, Cheng;Li, Shuhong;Huang, Wenli;Xiong, Chuan;Jin, Xing;Zheng, Linyong
    • Journal of Microbiology and Biotechnology
    • /
    • v.26 no.1
    • /
    • pp.89-98
    • /
    • 2016
  • Endophytes play an important role in the growth and development of the host. However, the study of endophytes is mostly focused on plants, and reports on bacteria associated with fungi are relatively rare. We studied the bacteria associated with fruiting bodies of Tricholoma matsutake picked from seven main T. matsutake-producing areas in Sichuan, China, by barcoded pyrosequencing. About 8,272 reads were obtained per sample, representing 40 phyla, 103 classes, and 495 genera of bacteria and archaea, and 361-797 operational taxonomic units were observed at a 97% similarity level. The bacterial community was always both more abundant and more diverse than the archaeal community. UniFrac analysis showed there were some difference of bacterial communities among the samples sites. Three bacterial phyla, Proteobacteria, Bacteroidetes, and Firmicutes, were dominant in all samples. Correlation analysis showed there was a significant correlation between some soil properties and bacterial community associated with T. matsutake. This study demonstrated that the bacteria associated with T. matsutake fruiting bodies were diversified. Among these bacteria, we may find some strains that can promote the growth of T. matsutake.

Evaluation of sensitivity of soil respiration to temperature in different forest types and developmental stages of maturity using the incubation method

  • Lee, Eun-Hye;Suh, Sang-Uk;Lee, Chang-Seok;Lee, Jae-Seok
    • Journal of Ecology and Environment
    • /
    • v.35 no.1
    • /
    • pp.1-7
    • /
    • 2012
  • To calculate and predict soil carbon budget and cycle, it is important to understand the complex interrelationships involved in soil respiration rate (Rs). We attempted to reveal relationships between Rs and key environmental factors, such as soil temperature, using a laboratory incubation method. Soil samples were collected from mature deciduous (MD), mature coniferous (MC), immature deciduous (ID), and immature coniferous (IC) forests. Prior to measure, soils were pre-incubated for 3 days at $25^{\circ}C$ and 60% of maximum water holding capacity (WHC). Samples of gasses were collected with 0, 2, and 4 h interval after the beginning of the measurement at soil temperatures of 5, 15, 25, and $35^{\circ}C$ (at 60% WHC). Air samples were collected using a syringe attached to the cap of closed bottles that contained the soil samples. The $CO_2$ concentration of each gas sample was measured by gas chromatography. Rs was strongly correlated with soil temperature (r, 0.93 to 0.96; P < 0.001). For MD, MC, ID, and IC soils taken from 0-5 cm below the surface, exponential functions explained 90%, 82%, 92%, and 86% of the respective data plots. The temperature and Rs data for soil taken from 5-10 cm beneath the surface at MD, MC, ID, and IC sites also closely fit exponential functions, with 83%, 95%, 87%, and 89% of the data points, respectively, fitting an exponential curve. The soil organic content in mature forests was significantly higher than in soils from immature forests (P < 0.001 at 0-5 cm and P < 0.005 at 5-10 cm) and surface layer (P = 0.04 at 0-5 cm and P = 0.12). High soil organic matter content is clearly associated with high Rs, especially in the surface layer. We determined that the incubation method used in this study have the possibility for comprehending complex characteristic of Rs.

Synchrotron-based Transmission X-ray Microscopy (TXM) Observations of Fully Hydrated Blood Platelets and Their Activation Process

  • Yang, Nuri;Nho, Hyun Woo;Kalegowda, Yogesh;Kim, Jin Bae;Song, Jaewoo;Shin, Hyun-Joon;Yoon, Tae Hyun
    • Bulletin of the Korean Chemical Society
    • /
    • v.35 no.9
    • /
    • pp.2625-2629
    • /
    • 2014
  • Platelets are anuclear discoid-shaped blood cells with key roles in human body. To understand the mechanisms of their activation process, it is required to have analytical imaging techniques capable of acquiring platelet images under fully hydrated conditions. Herein, for the first time, we demonstrate the capability of synchrotron-based transmission X-ray microscopy (TXM) to study platelets (resting and ADP activated) under hydrated and air-dried conditions. To confirm the biological imaging capability of TXM, fixed platelets were imaged and compared with whole mount electron microscopy (EM) images. TXM provided morphological information with sufficient spatial resolution with simple and quick sample preparation procedure. We also observed temporal changes during the platelet activation, which initially had a discoid shape (0 s), formed pseudopodia (30 s) and generated a network of fibrin (5 min). Our results clearly demonstrate the potential of TXM technique to study fully hydrated biological samples under in situ conditions.

Surface Treatment of Polypropylene using a Large Area Atmospheric Pressure Plasma-solution System (대면적 대기압 플라즈마-용액 시스템을 이용한 폴리프로필렌 표면 처리)

  • Tran, Chinh Quoc;Choi, Ho-Suk
    • Korean Chemical Engineering Research
    • /
    • v.49 no.3
    • /
    • pp.271-276
    • /
    • 2011
  • We investigated the possibility of introducing functional groups without damaging surface polymeric chains through the treatment of a polypropylene(PP) film immersed in liquid phase using an atmospheric pressure plasma with large area. The ionic liquid of 1-butyl-3-methylimidazolium tetrafluoroborate: $[BMIM]^{+}[BF_{4}]^{-}$- was successfully applied for generating stable plasmas in the plasma-solution system. We successfully treated the film surface using the plasma-solution system and confirmed various oxygen-containing functional groups formed on the surface of PP film. The surface free energy of PP film was increased with increasing plasma treatment time and power. It also showed a maximum value at the PP sample treated in the ionic liquid solution of 1.5 M. ATR-FTIR analyses revealed the increase of various carbonyl groups(1,726 $cm^{-1}$, 1,643 $cm^{-1}$) and OH groups$(3,100{\sim}3,500\;cm^{-1})$ after plasma treatment of PP film, and XPS also supported the ATR-FTIR result.

Effects of Pressure Ulcer Classification System Education Program on Knowledge and Visual Discrimination Ability of Pressure Ulcer Classification and Incontinence-Associated Dermatitis for Hospital Nurses (욕창 분류체계교육프로그램이 병원간호사의 욕창 분류체계와 실금관련 피부염에 대한 지식과 시각적 감별 능력에 미치는 효과)

  • Lee, Yun Jin;Park, Seungmi
    • Journal of Korean Biological Nursing Science
    • /
    • v.16 no.4
    • /
    • pp.342-348
    • /
    • 2014
  • Purpose: The purpose of this study was to examine the effects of pressure ulcer classification system education on hospital nurses' knowledge and visual discrimination ability of pressure ulcer classification system and incontinence-associated dermatitis. Methods: One group pre- and post-test was used. A convenience sample of 96 nurses participating in pressure ulcer classification system education, were enrolled in single institute. The education program was composed of a 50-minute lecture on pressure ulcer classification system and case-studies. The pressure ulcer classification system and incontinence-associated dermatitis knowledge test and visual discrimination tool, consisting of 21 photographs including clinical information were used. Paired t-test was performed using SPSS/WIN 18.0. Results: The overall mean difference of pressure ulcer classification system knowledge (t=4.67, p<.001) and visual discrimination ability (t=10.58, p<.001) were statistically and significantly increased after pressure ulcer classification system education. Conclusion: Overall understanding of pressure ulcer classification system and incontinence-associated dermatitis after pressure ulcer classification system education was increased, but tended to have lack of visual discrimination ability regarding stage III, suspected deep tissue injury. Differentiated continuing education based on clinical practice is needed to improve knowledge and visual discrimination ability for pressure ulcer classification system, and comparison experiment research is required to evaluate its effects.

Insecticidal Activity of Bacillus thuringiensis 656-3 Strain to Mushroom Flies in Oyster Mushroom House

  • Park, Yong-Soo;Kang, Young-Jin;Lee, Kwang-Sik;Jianhong Le;Je, Yeon-Ho;Roh, Jong-Yul;Seo, Sook-Jae;Sohn, Hung-Dae;Jin, Byung-Rae
    • International Journal of Industrial Entomology and Biomaterials
    • /
    • v.8 no.1
    • /
    • pp.61-66
    • /
    • 2004
  • Bacillus thuringiensis 656-3 which was isolated from a soil sample of mushroom house and showed high toxicity to mushroom flies, Lycoliella mali and Coboldia fuscipes, was surveyed for insecticidal effect in the oyster mushroom house.3. thutingiensis 656-3 was mass-cultured in the fermenter containing soybean cake(2%) and wheat bran (2%) as media source. Semi-for-mutation of B. thuringiensis 656-3 was performed with metamorphic starch only. When the formulation suspension containing $5{\times}{10^7}$ cfu was sprayed on the mushroom in mushroom house, the insecticidal effect of B. thuringiensis 656-3 to mushroom flies,1. mali and C. fuscipes, was maintained over 90% by the fifth day after starting spraying. The yield of oyster mushroom house with B. thuringiensis 656-3 was significantly increased compared to control. B. thuringiensis 656-3 represents a powerful biological insecticide for the control of mushroom flies.

A Pressure Applied Low-Level Laser Probe to Enhance Laser Photon Density in Soft Tissue (생체조직내 레이저 광 밀도 향상을 위한 압력 인가형 저출력 레이저 프로브)

  • Yeo, Chang-Min;Park, Jung-Hwan;Son, Tae-Yoon;Lee, Yong-Heum;Jung, Byung-Jo
    • Journal of Biomedical Engineering Research
    • /
    • v.30 no.1
    • /
    • pp.18-22
    • /
    • 2009
  • Laser has been widely used in various fields of medicine. Recently, noninvasive low-level laser therapeutic medical devices have been introduced in market. However, low-level laser cannot deliver enough photon density to expect positive therapeutic results in deep tissue layer due to the light scattering property in tissue. In order to overcome the limitation, this study was aimed to develop a negative pressure applied low-level laser probe to optimize laser transmission pattern and therefore, to improve photon density in soft tissue. In order to evaluate the possibility of clinical application of the developed laser probe, ex-vivo experiments were performed with porcine skin samples and laser transmissions were quantitatively measured as a function of tissue compression. The laser probe has an air suction hole to apply negative pressure to skin, a transparent plastic body to observe variations of tissue, and a small metallic optical fiber guide to support the optical fiber when negative pressure was applied. By applying negative pressure to the laser probe, the porcine skin under the metallic optical fiber guide is compressed down and, at the same time, low-level laser is emitted into the skin. Finally, the diffusion images of laser in the sample were acquired by a CCD camera and analyzed. Compared to the peak intensity without the compression, the peak intensity of laser increased about $2{\sim}2.5$ times and FWHM decreased about $1.67{\sim}2.85$ times. In addition, the laser peak intensity was positively and linearly increased as a function of compression. In conclusion, we verified that the developed low-level laser probe can control the photon density in tissue by applying compression, and therefore, its potential for clinical applications.

Effect of tannin contents on the physicochemical characteristics of acorn starch (탄닌함량에 따른 도토리전분의 물리화학적 특성)

  • Ahn, Ho-Kyoung;Choi, Hyeong-Taeg;Kim, Byong-Lyoung;Oh, Doo-Hwan
    • Applied Biological Chemistry
    • /
    • v.33 no.4
    • /
    • pp.301-306
    • /
    • 1990
  • The Physical and chemical properties or dry acorn starch(DS), detannined acorn starch (DTS) and defatted and detannined acorn starch(Drn) were investigated. Ail acorn starch sample, observed by a scanning electron microscope, showed a hemispherical shape ud its size was about $5{\sim}10{\mu}m$ in diameter. It had a little change on the pasting temperature of DS, DTS and DFTS but peak viscosity of DTS was somewhat higher than that of n. Flow behavior of gelatinized starch pastes showed a pseudoplastic behavior and flow behavior index was lower than unit. The consistency coefficient showed concentraion and temperature dependency. The activation energies of DS, DTS and DFTS were $2.09{\sim}3.58Kcal/g\;{\cdot}\;mol and time dependent characteristic of acorn starch samples showed thixotrpic behavior.

  • PDF

Effect of lipid contents on the physicochemical characteristics of acorn starch (지방함량 변화에 따른 도토리전분의 이화학적 특성)

  • Ahn, Ho-Kyoung;Kil, Hun-Bae;Yoo, Hae-Euy;Oh, Doo-Hwan
    • Applied Biological Chemistry
    • /
    • v.33 no.4
    • /
    • pp.293-300
    • /
    • 1990
  • The physical and chemical properties of dry acorn starch(DS), defatted acorn starch (DFS) and reincorporated acorn starch(RIS) were investigated. Swelling power and solubility of all starch sample, were exhibited two stage behavior. It had a little change on the pasting temperature of DS and DFS but the peak viscosity and breakdown value of DFS was somewhat higher than those of DS and RIS. Flow behavior of gelatinized starch pastes showed a pseudoplastic behavior and flow behavior index was lower than unit The consistency coefficient showed concentration and temperature dependency. The activation energies of DS, DFS and RIS were from $1.70Kca1/g\;{\cdot}\;mol$ to $3.75Kca1/g\;{\cdot}\;mol$.

  • PDF

Colony Counts by Different Disinfecting Processes and Operating Time for Humidifiers in an Intensive Care Unit (중환자실 내 가습기의 소독방법과 시간적 경과에 따른 균집락 수)

  • Park, Soon-Mi;Jeong, Ihn-Sook;Chang, Chul-Hun L.;Lee, Young-Soon
    • Journal of Korean Biological Nursing Science
    • /
    • v.11 no.1
    • /
    • pp.92-98
    • /
    • 2009
  • Purpose: This study was aimed to investigate the colony counts by different disinfecting processes and duration of the operation for humidifiers in an intensive care unit (ICU) in Busan. Method: The four steps of disinfecting process were taken with four different humidifiers according to the use of disinfectant (1:100 $Deconex^{(R)}$ 50FF/nothing) and refilling water (tap water/distilled water). First, the colony counts using water sample from wick was conducted at 0 hr, 24 hr, and 48 hr respectively after turning on the humidifiers. Next, the colony counts using waterdrop from the outlet was done at 0 hr, 24 hr, 48 hr, and 72 hr respectively after turning on the humidifiers. Result: No colony was counted after disinfecting with 1:100 $Deconex^{(R)}$ 50FF until 72 hr after turning on the humidifiers. However, without disinfecting with $Deconex^{(R)}$ 50FF, the colony count was increased in the humidifiers from 24 hr after turning on the humidifiers. The result was the same regardless of the refilling water. Conclusion: According to the results, the study found that disinfection of humidifiers in the ICUs with 1:100 $Deconex^{(R)}$ 50FF every 72 hr is effective to remove general bacteria.

  • PDF