• Title/Summary/Keyword: biological network

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Network Construction Method of Oceanographic Research Vessel for an Efficient Investigation (과학적 탐사를 위한 해양조사선 네트워크 구축방안)

  • 박종원;강준선;임용곤;최영철;김시문;김승근
    • Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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    • 2003.10a
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    • pp.172-175
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    • 2003
  • This paper deals with the network interface of research and observation instruments in the oceanographic research vessel with an establishment of related database for measured information. The system is implemented to integrated communication network system which allows to effective survey by using real time observation and GUI(Graphic User Interface). The system also consists of the LAN systems and serial interface to link chemical, physical, biological and environmental relations. And, other network service and vessel data service for data communication between vessel and earth station such as INMARSAT-B, WWW service, BBS, E-Mail etc. are needed for integrated communication network system.

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Intrabed Networks in a Patient Monitoring System (환자 모니터링 시스템에서의 통신 방식(I) : 인트라베드 통신망)

  • 우응제;박승훈;김경수;최근호;김승태;이희철;서재준;김형진
    • Journal of Biomedical Engineering Research
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    • v.18 no.4
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    • pp.373-380
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    • 1997
  • In this paper, we describe the intrabed network in a patient monitoring system we developed The intrabed network handles data communication between the main unit of a bedside patient monitor and parameter modules plugged in it. We designed the intrabed network based on RS-485 and HDLC protocol with 1 Mbps data rate. Message exchanges are implemented based on three data structures of packet frame. and stream. We present the specification and the performance of the data communication network for the developed patient monitor.

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Adaptively Trained Artificial Neural Network Identification of Left Ventricular Assist Device (적응 학습방식의 신경망을 이용한 좌심실보조장치의 모델링)

  • Kim, Sang-Hyun;Kim, Hun-Mo;Ryu, Jung-Woo
    • Journal of Biomedical Engineering Research
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    • v.17 no.3
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    • pp.387-394
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    • 1996
  • This paper presents a Neural Network Identification(NNI) method for modeling of highly complicated nonlinear and time varing human system with a pneumatically driven mock circulatory system of Left Ventricular Assist Device(LVAD). This system consists of electronic circuits and pneumatic driving circuits. The initiation of systole and the pumping duration can be determined by the computer program. The line pressure from a pressure transducer inserted in the pneumatic line was recorded System modeling is completed using the adaptively trained backpropagation learning algorithms with input variables, heart rate(HR), systole-diastole rate(SDR), which can vary state of system. Output parameters are preload, afterload which indicate the systemic dynamic characteristics. Consequently, the neural network shows good approximation of nonlinearity, and characteristics of left Ventricular Assist Device. Our results show that the neural network leads to a significant improvement in the modeling of highly nonlinear Left Ventricular Assist Device.

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Current Developments of Biomedical Mobile Devices for Ubiquitous Healthcare (u-Healthcare를 위한 바이오 단말기의 개발 현황)

  • Lee, Tae-Soo;Hong, Joo-Hyun
    • Journal of Biomedical Engineering Research
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    • v.30 no.3
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    • pp.185-190
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    • 2009
  • Biomedical mobile devices for ubiquitous healthcare consist of biomedical sensors and communication terminal. They have two types of configuration. One is the sensor-network type device using wired or wireless communication with intelligent sensors to acquire biomedical data. The other is the sensor embedded type device, where the data can be acquired directly by itself. There are many examples of sensor network type, such as, fall detection sensor, blood glucose sensor, and ECG sensors networked with commercial PDA phone and commercial phone terminal for ubiquitous healthcare. On the other hand, sensor embedded type mounts blood glucose sensor, accelerometer, and etc. on commercial phone. However, to enable true ubiquitous healthcare, motion sensing is essential, because users go around anywhere and their signals should be measured and monitored, when they are affected by the motion. Therefore, in this paper, two biomedical mobile devices with motion monitoring function were addressed. One is sensor-network type with motion monitoring function, which uses Zigbee communication to measure the ECG, PPG and acceleration. The other is sensor-embedded type with motion monitoring function, which also can measure the data and uses the built-in cellular phone network modem for remote connection. These devices are expected to be useful for ubiquitous healthcare in coming aged society in Korea.

Functional Conservation and Divergence of FVE Genes that Control Flowering Time and Cold Response in Rice and Arabidopsis

  • Baek, Il-Sun;Park, Hyo-Young;You, Min Kyoung;Lee, Jeong Hwan;Kim, Jeong-Kook
    • Molecules and Cells
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    • v.26 no.4
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    • pp.368-372
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    • 2008
  • Recent molecular and genetic studies in rice, a short-day plant, have elucidated both conservation and divergence of photoperiod pathway genes and their regulators. However, the biological roles of rice genes that act within the autonomous pathway are still largely unknown. In order to better understand the function of the autonomous pathway genes in rice, we conducted molecular genetic analyses of OsFVE, a rice gene homologous to Arabidopsis FVE. OsFVE was found to be ubiquitously expressed in vegetative and reproductive organs. Overexpression of OsFVE could rescue the flowering time phenotype of the Arabidopsis fve mutants by up-regulating expression of the SUPPRESSOR OF OVEREXPRESSION OF CO1 (SOC1) and down-regulating FLOWERING LOCUS C (FLC) expression. These results suggest that there may be a conserved function between OsFVE and FVE in the control of flowering time. However, OsFVE overexpression in the fve mutants did not rescue the flowering time phenotype in in relation to the response to intermittent cold treatment.

The Development of Herbal Medicine Network Analysis System

  • Ho Jang
    • Journal of the Korea Society of Computer and Information
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    • v.28 no.10
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    • pp.113-121
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    • 2023
  • Network pharmacology in traditional Korean and Chinese medicine studies the molecular and biological aspects of herbal medicine using computational methods. Despite variations in databases, techniques, and criteria, most studies follow similar steps: constructing herb-compound networks, compound-target networks, and target interpretation. To ensure efficient and consistent analysis in herbal medicine network pharmacology, we designed and implemented a common analysis pipeline. We showed its reliability with existing databases. The proposed system has a potential to facilitate network pharmacology analysis in traditional medicine, ensuring consistent analysis of various herbal medicines.

Standard operating procedures for the collection, processing, and storage of oral biospecimens at the Korea Oral Biobank Network

  • Young-Dan Cho;Eunae Sandra Cho;Je Seon Song;Young-Youn Kim;Inseong Hwang;Sun-Young Kim
    • Journal of Periodontal and Implant Science
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    • v.53 no.5
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    • pp.336-346
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    • 2023
  • Purpose: The Korea Oral Biobank Network (KOBN) was established in 2021 as a branch of the Korea Biobank Network under the Korea Centers for Disease Control and Prevention to provide infrastructure for the collection, management, storage, and utilization of human bioresources from the oral cavity and associated clinical data for basic research and clinical studies. Methods: To address the need for the unification of the biobanking process, the KOBN organized the concept review for all the processes. Results: The KOBN established standard operating procedures for the collection, processing, and storage of oral samples. Conclusions: The importance of collecting high-quality bioresources to generate accurate and reproducible research results has always been emphasized. A standardized procedure is a basic prerequisite for implementing comprehensive quality management of biological resources and accurate data production.

Brain activation pattern and functional connectivity network during classification on the living organisms

  • Byeon, Jung-Ho;Lee, Jun-Ki;Kwon, Yong-Ju
    • Journal of The Korean Association For Science Education
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    • v.29 no.7
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    • pp.751-758
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    • 2009
  • The purpose of this study was to investigate brain activation pattern and functional connectivity network during classification on the biological phenomena. Twenty six right-handed healthy science teachers volunteered to be in the present study. To investigate participants' brain activities during the tasks, 3.0T fMRI system with the block experimental-design was used to measure BOLD signals of their brain. According to the analyzed data, superior, middle and inferior frontal gyrus, superior and inferior parietal lobule, fusiform gyrus, lingual gyrus, and bilateral cerebellum were significantly activated during participants' carrying-out classification. The network model was consisting of six nodes (ROIs) and its fourteen connections. These results suggested the notion that the activation and connections of these regions mean that classification is consist of two sub-network systems (top-down and bottom-up related) and it functioning reciprocally. These results enable the examination of the scientific classification process from the cognitive neuroscience perspective, and may be used as basic materials for developing a teaching-learning program for scientific classification such as brain-based science education curriculum in the science classrooms.

Countermeasure to the Stages of Crisis Management in the Bioterrorism (생물테러리즘의 위기관리방안)

  • Lee, Kwang-Lyeol
    • The Journal of the Korea Contents Association
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    • v.9 no.9
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    • pp.235-242
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    • 2009
  • This study aims to examine terrorism by biological agents. These days terrorism evolved so rapidly that more than one terror occurs a day in global society as we are on the edge of so-called New-terrorism. One of new examples of new terrorism is Bioterrorism by biological agents. In order to address Bioterrorism we should conduct a study to examine things to be prepared at ordinary times and future plans. As an effort to develop countermeasures against Bioterrorism, anti-terrorism laws should be made on Prevention phases anti-terrorism funding laws as well. Other Bioterrorism laws need to be made. On Response phases initial reaction task force should be ready for making positive initial reaction. A special hospital for CBR(Chemical, Biologlcal, and Radiological) warfare needs to be designated to practice medicine. Biological~safety-Levels should be constructed by IV levels. Effective public promotion network should be built. On Recovery phases evaluation system needs to be suggested and international cooperative network should be established.

Differential Gene Expression Common to Acquired and Intrinsic Resistance to BRAF Inhibitor Revealed by RNA-Seq Analysis

  • Ahn, Jun-Ho;Hwang, Sung-Hee;Cho, Hyun-Soo;Lee, Michael
    • Biomolecules & Therapeutics
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    • v.27 no.3
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    • pp.302-310
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    • 2019
  • Melanoma cells have been shown to respond to BRAF inhibitors; however, intrinsic and acquired resistance limits their clinical application. In this study, we performed RNA-Seq analysis with BRAF inhibitor-sensitive (A375P) and -resistant (A375P/Mdr with acquired resistance and SK-MEL-2 with intrinsic resistance) melanoma cell lines, to reveal the genes and pathways potentially involved in intrinsic and acquired resistance to BRAF inhibitors. A total of 546 differentially expressed genes (DEGs), including 239 up-regulated and 307 down-regulated genes, were identified in both intrinsic and acquired resistant cells. Gene ontology (GO) analysis revealed that the top 10 biological processes associated with these genes included angiogenesis, immune response, cell adhesion, antigen processing and presentation, extracellular matrix organization, osteoblast differentiation, collagen catabolic process, viral entry into host cell, cell migration, and positive regulation of protein kinase B signaling. In addition, using the PAN-THER GO classification system, we showed that the highest enriched GOs targeted by the 546 DEGs were responses to cellular processes (ontology: biological process), binding (ontology: molecular function), and cell subcellular localization (ontology: cellular component). Ingenuity pathway analysis (IPA) network analysis showed a network that was common to two BRAF inhibitorresistant cells. Taken together, the present study may provide a useful platform to further reveal biological processes associated with BRAF inhibitor resistance, and present areas for therapeutic tool development to overcome BRAF inhibitor resistance.