• Title/Summary/Keyword: biological data

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A DIFFERENTIAL EQUATION WITH DELAY FROM BIOLOGY

  • Otrocol, Diana
    • Journal of applied mathematics & informatics
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    • v.26 no.5_6
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    • pp.1037-1048
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    • 2008
  • The purpose of this paper is to present a differential equation with delay from biological excitable medium. Existence, uniqueness and data dependence (monotony, continuity, differentiability with respect to parameter) results for the solution of the Cauchy problem of biological excitable medium are obtained using weakly Picard operator theory.

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Efficient conversion of arteannuic acid into epi-deoxyarteannuin B (Arteannuic acid에서 epi-deoxyarteannuin B의 효과적 합성)

  • Kim, Soo-Un
    • Applied Biological Chemistry
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    • v.33 no.2
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    • pp.174-176
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    • 1990
  • Oxidation of artemisinic acid was attempted with chromium trioxide-pyridine complex. Epi-Deoxyarteannuin B was formed almost quantitatively, while expected keto artemisinic acid was not the major product. The physical and spectral data of the product are presented(Received March 9, 1990, Accepted May 25, 1990)

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Application of Physiologically Based Pharmacokinetic Modeling with Biological Monitoring Data for Risk Assessment (생물학적 모니터링 데이터를 기초한 PBPK 모델의 활용)

  • Yang, Mi-Hi;Yang, Ji-Yeon;Yi, Bit-Na;Lee, Ho-Sun
    • Environmental Analysis Health and Toxicology
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    • v.22 no.1 s.56
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    • pp.1-8
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    • 2007
  • Biological monitoring, analyses of internal dose for exposure to toxicants, has been thought as one of the belt approaches for risk assessment. As the amount detected in human samples is generally very low, typically in the parts-per-bilion (ppb) or parts-per-trillion (ppt) range, analytic technologies such at HPLC, GC/MS, LC/MS, and LC/MS/MS have been continuously developed. In addition, route specific and sensitive exposure biomarkers have been developed for proper biological monitoring. PBPK modeling, particularly reverse dosimetry, has been emphasized as an useful method via interpretation of biological monitoring results for regulation of toxicants. Thus, this review is focused on the use of PBPK dosimetry models for toxicology research and risk assessment in Korea.

Suppression of Bacterial Wilt with Fuorescent Pseudomonads, TS3-7 strain (Fluorescent siderophore 생산균주, TS3-7에 의한 풋마름병 발병 억제)

  • Kim, Ji-Tae;Cho, Hong-Bum;Kim, Shin-Duk
    • Applied Biological Chemistry
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    • v.48 no.3
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    • pp.296-300
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    • 2005
  • Among the root colonizing and plant growth promoting bacteria isolated from the bacterial wilt suppressive soil, five strains were detected to produce siderophores by CAS agar assay. The most effective isolate, TS3-7 strain induced significant suppression of bacterial wilt disease in tomato and pepper plants. Seed treatment followed by soil drench application with this strain resulted in over 80% reduction of bacterial wilt disease compared with the control. Significant disease suppression by TS3-7 strain was related to the production of siderophore. Besides iron competition, induction of resistance of the host plant with siderophore was suggested to be another mode of action that suppress bacterial wilt, based on the lack of direct antibiosis against pathogen in vitro. According to Bergey's Manual of Systemic Bacteriology and 16S rDNA sequence data, TS3-7 stain was identified as Pseudomonas sp. TS3-7.

Carotenogenesis in Haematococcus lacustris: Role of Protein Tyrosine Phosphatases

  • Park, Jae-Kweon;Tran, Phuong Ngoc;Kim, Jeong-Dong;Hong, Seong-Joo;Lee, Choul-Gyun
    • Journal of Microbiology and Biotechnology
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    • v.19 no.9
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    • pp.918-921
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    • 2009
  • In the present study, we examined the inhibitory effects of protein tyrosine phosphatase (PTPase) inhibitors, including sodium orthovanadate (SOV), ammonium molybdate (AM), and iodoacetamide (IA), on cell growth, accumulation of astaxanthin, and PTPase activity in the photosynthetic algae Haematococcus lacustris. PTPase activity was assayed spectrophotometrically and was found to be inhibited 60% to 90% after treatment with the inhibitors. SOY markedly abolished PTPase activity, significantly activating the accumulation of astaxanthin. These data suggest that the accumulation of astaxanthin in H. lacustris results from the concerted actions of several PTPases.

Westerdykella reniformis: A New Record from Field Soils in Korea

  • Adhikari, Mahesh;Kim, Sang Woo;Gwon, Byeong Heon;Ju, Han Jun;Lee, Hyang Burm;Lee, Youn Su
    • The Korean Journal of Mycology
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    • v.48 no.1
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    • pp.47-53
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    • 2020
  • During a survey of fungal diversity in different provinces of South Korea in 2017, a new fungal isolate was discovered. This fungal isolate was identified as Westerdykella reniformis, based on its morphological characteristics and phylogenetic analysis, using internal transcribed spacer (ITS) and 28S ribosomal DNA (28S rDNA) sequence data. To our knowledge, W. reniformis has not previously been reported in South Korea. Thus, in this study, we report a new record of a species from the Dothideomycetes class in Korea, and provide a detailed description with morphological illustrations.

PathTalk: Interpretation of Microarray Gene-Expression Clusters in Association with Biological Pathways

  • Chung, Tae-Su;Chung, Hee-Joon;Kim, Ju-Han
    • Genomics & Informatics
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    • v.5 no.3
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    • pp.124-128
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    • 2007
  • Microarray technology enables us to measure the expression of tens of thousands of genes simultaneously under various experimental conditions. Clustering analysis is one of the most successful methods for analyzing microarray data using the assumption that co-expressed genes may be co-regulated. It is important to extract meaningful clusters from a long unordered list of clusters and to evaluate the functional homogeneity and heterogeneity of clusters. Many quality measures for clustering results have been suggested in different conditions. In the present study, we consider biological pathways as a collection of biological knowledge and used them as a reference for measuring the quality of clustering results and functional homogeneities. PathTalk visualizes and evaluates functional relationships between gene clusters and biological pathways.

DRG2 Deficiency Causes Impaired Microtubule Dynamics in HeLa Cells

  • Dang, Thao;Jang, Soo Hwa;Back, Sung Hoon;Park, Jeong Woo;Han, In-Seob
    • Molecules and Cells
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    • v.41 no.12
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    • pp.1045-1051
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    • 2018
  • The developmentally regulated GTP binding protein 2 (DRG2) is involved in the control of cell growth and differentiation. Here, we demonstrate that DRG2 regulates microtubule dynamics in HeLa cells. Analysis of live imaging of the plus-ends of microtubules with EB1-EGFP showed that DRG2 deficiency (shDRG2) significantly reduced the growth rate of HeLa cells. Depletion of DRG2 increased 'slow and long-lived' subpopulations, but decreased 'fast and short-lived' subpopulations of microtubules. Microtubule polymerization inhibitor exhibited a reduced response in shDRG2 cells. Using immunoprecipitation, we show that DRG2 interacts with tau, which regulates microtubule polymerization. Collectively, these data demonstrate that DRG2 may aid in affecting microtubule dynamics in HeLa cells.

Two newly recorded echinoderms from the mesophotic zone in Korea

  • Michael Dadole Ubagan;Jinho Lee;Sook Shin;Taekjun Lee
    • Journal of Species Research
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    • v.12 no.2
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    • pp.180-188
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    • 2023
  • The region of the marine environment between shallow waters and deep-sea (30-150 m in depth) is referred to as the twilight or mesophotic zone. This zone has been scarcely examined, as these depths are too shallow for safe submersible operation. Since 2018, a survey of mesophotic echinoderms in Korea has yielded many specimens of interest. In this study, we present two newly recorded echinoderms, Henricia irregularis and Parastichopus nigripunctatus based on morphological redescriptions with high-definition photographs and DNA barcoding data for P. nigripunctatus.