• 한국해양학회지
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• 제24권3호
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• pp.148-156
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• 1989

본 연구는 여러 수생생태계에서 유기물의 동적순환에 따른 부유성 박테리아와 부착성 박테리아의 그램염색(gram-stain) 특성을 알아보기 위한 일련의 시도로서 일본에서 두번째로 크며 부영양화가 상당히 진전된 가스미가우라 호수에서 1년간, 매주 실시했다. 이 전형적인 부영양형(eutrophic) 수생생태계의 박테리아군집의 그램염색 특성은 중영양형(mesotrophic) 환경과 같이 유기물의 유입에 따라 변화함을 보여준다. 그램음성(negative) 박테리아군집은 부유성 박테리아군집이 약 57%, 부착성 박테리아군집이 약 53%이며, 두 군집의 통계분석은 서로 다른 특성을 보여준다. 부착성 박테리아군집은 그램 양성, 음성 모두 쇄설성 유기물 형성과 분해에 영향을 미친다. 또한 그램 음성 부유박테리아는 특히 용존 유기물의 동적순환에 관여한다.

• 한국해양생명과학회지
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• 제6권1호
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• pp.9-22
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• 2021

We determined the composition of water and sediment bacterial assemblages from the East Sea using 16S rRNA gene sequencing. Total bacterial reads were greater in surface waters (<100 m) than in deep seawaters (>500 m) and sediments. However, total OTUs, bacterial diversity, and evenness were greater in deep seawaters than in surface waters with those in the sediment comparable to the deep sea waters. Proteobacteria was the most dominant bacterial phylum comprising 67.3% of the total sequence reads followed by Bacteriodetes (15.8%). Planctomycetes, Verrucomicrobia, and Actinobacteria followed all together consisting of only 8.1% of the total sequence. Candidatus Pelagibacter ubique considered oligotrophic bacteria, and Planctomycetes copiotrophic bacteria showed an opposite distribution in the surface waters, suggesting a potentially direct competition for available resources by these bacteria with different traits. The bacterial community in the warm surface waters were well separated from the other deep cold seawater and sediment samples. The bacteria exclusively associated with deep sea waters was Actinobacteriacea, known to be prevalent in the deep photic zone. The bacterial group Chromatiales and Lutibacter were those exclusively associated with the sediment samples. The overall bacterial community showed similarities in the horizontal rather than vertical direction in the East Sea.

• Journal of Microbiology and Biotechnology
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• 제22권4호
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• pp.563-566
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• 2012

To investigate the possibility of horizontal gene transfer between agricultural microorganisms and soil microorganisms in the environment, Bacillus subtilis KB producing iturin and the PGPR recombinant strain Pseudomonas fluorescens MX1 were used as model microorganisms. The soil samples of cucumber or tomato plants cultivated in pots and the greenhouse for a six month period were investigated by PCR, real-time PCR, Southern hybridization, and terminal restriction fragment length polymorphism (T-RFLP) fingerprinting. Our data from Southern blotting and T-RFLP patterns suggest that the model bacteria do not give significant impacts on the other bacteria in the pots and greenhouse during cultivation.

• 한국환경농학회지
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• 제38권4호
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• pp.219-224
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• 2019

BACKGROUND: Soil bacteria play important roles in organic matter decomposition and nutrient cycling during the non-growing season. The purpose of this study was to investigate the effects of soil management and chemical properties on the utilization of carbon sources by soil bacteria in paddy fields. METHODS AND RESULTS: The Biolog EcoPlate was used for analyzing community-level carbon substrate utilization profiles of soil bacteria. Soils were collected from the following three types of areas: plain, interface and mountain areas, which were tested to investigate the topology effect. The results of canonical correspondence analysis and Kendall rank correlation analysis showed that soil C/N ratio and NH₄⁺ influenced utilization of carbon sources by bacteria. The utilization of carbohydrates and complex carbon sources were positively correlated with NH₄⁺ concentration. Cultivated paddy fields were compared with adjacent abandoned fields to investigate the impact of cultivation cessation. The level of utilization of putrescine was lower in abandoned fields than in cultivated fields. Monoculture fields were compared with double cropping fields cultivated with barley to investigate the impact of winter crop cultivation. Cropping system altered bacterial use of carbon sources, as reflected by the enhanced utilization of 2-hydroxy benzoic acid under monoculture conditions. CONCLUSION: These results show that soil use intensity and topological characteristics have a minimal impact on soil bacterial functioning in relation to carbon substrate utilization. Moreover, soil chemical properties were found to be important factors determining the physiological profile of the soil bacterial community in paddy fields.

• 한국미생물·생명공학회지
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• 제42권2호
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• pp.121-130
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• 2014

Bacteria 군집 차이를 이용한 신속한 한국산 및 중국산 김치 원산지 판별 가능성의 검토를 위하여 Terminal Restriction Fragment Length Polymorphism (T-RFLP) 분석법을 적용하였다. T-RFLP 분석은 김치발효에 관여하는 주요 유산균의 빠르고, 재현성 있는 검출에는 효과적이었지만, 종(species) 수준에서의 미생물 확인에는 한계를 가지고 있어 한국산 및 중국산 김치에 특이적으로 존재하는 bacteria의 검출에는 부적합한 것으로 평가되었다. T-RFLP를 적용한 발효과정 중의 한국산 및 중국산 김치에 존재하는 bacteria 군집 천이 분석은 비슷한 양상으로 나타났고, Bacillus 속이 발효 후기까지 검출되었다. 또한 Bacillus 속은 발효 후기에 포자를 형성하는 것으로 확인되었다.

• Journal of Microbiology and Biotechnology
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• 제18권8호
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• pp.1470-1474
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• 2008

Nitrospira is a dominant member of nitrite-oxidizing bacteria (NOB) in nitrifying bioreactors as well as in natural habitats. In this study, Nitrospira NOB were investigated in the two nitrifying reactors operated with high and low dissolved oxygen (DO) concentrations for a period of 300 days. Phylogenetic and terminal restriction fragment length polymorphism analyses based on 168 rRNA gene sequences revealed that the Nitrospira community compositions of the two reactors during the early period related to group 1 and half of the Nitrospira community composition shifted to group 2 in the high-DO reactor after day 179, although there was no significant change in the low-DO reactor. These results suggested that DO was an important factor affecting Nitrospira community compositions in the nitrifying reactors.

• Journal of Microbiology and Biotechnology
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• 제31권7호
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• pp.978-989
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• 2021

Allyl isothiocyanate (AITC), as a fumigant, plays an important role in soil control of nematodes, soil-borne pathogens, and weeds, but its effects on soil microorganisms are unclear. In this study, the effects of AITC on microbial diversity and community composition of Capsicum annuum L. soil were investigated through Illumina high-throughput sequencing. The results showed that microbial diversity and community structure were significantly influenced by AITC. AITC reduced the diversity of soil bacteria, stimulated the diversity of the soil fungal community, and significantly changed the structure of fungal community. AITC decreased the relative abundance of dominant bacteria Planctomycetes, Acinetobacter, Pseudodeganella, and RB41, but increased that of Lysobacter, Sphingomonas, Pseudomonas, Luteimonas, Pseudoxanthomonas, and Bacillus at the genera level, while for fungi, Trichoderma, Neurospora, and Lasiodiplodia decreased significantly and Aspergillus, Cladosporium, Fusarium, Penicillium, and Saccharomyces were higher than the control. The correlation analysis suggested cellulase had a significant correlation with fungal operational taxonomic units and there was a significant correlation between cellulase and fungal diversity, while catalase, cellulose, sucrase, and urease were the major contributors in the shift of the community structure. Our results will provide useful information for the use of AITC in the assessment of environmental and ecological security.

• 미생물학회지
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• 제37권1호
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• pp.85-91
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• 2001

생물학적 방법으로 토착 미생물에 의해 벤젠과 톨루엔을 효과적으로 분해할 수 있는 토양환경인자의 조건을 조사하기 위해 16가지의 서로 다른 환경의 미소환경(microcosm)을 제작하여 벤젠과 톨루엔 분해실험을 수행하였고, 아울러 분해과정에서 토착미생물의 분포변화를 조사하였다. 그 결과 실험 조건중 토양의 수분 포화도는 30%와 60%이면서 동시에 생물들이 흡착할 수 있는 미생물 흡착제로 활성탄을 1% 첨가한 미소환경(Case 6, Case 7)에서 벤젠과 톨루엔의 분해속도가 가장 빨랐다. 토착토양미생물의 분포변화를 조사한 결과 벤젠과 톨루엔의 분해가 가장 빨리 일어나는 Case 6 와 Case 7에서는 10일 배양 후 total culturable bacteria는 초기 세균 수에 비해 각각 488배와 308배가 증가하였다. 벤젠과 톨루엔 분해세균의 증가 역시 총 세균수가 증가하는 비율로 증가하여 초기 분포를 계속 유지하였고, 벤젠과 톨루엔을 첨가한 미소환경에서 분해 미생물 종의 변화는, 첨가 전 그람음성 세균이 반응 10일 후에는 그람양성 세균이 탈이 분리되었다.

• 한국물환경학회지
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• 제23권5호
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• pp.676-682
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• 2007

The bacterial number, extracellular enzyme activities and structure of bacterial community which are major constituent of aquatic ecosystem within the artificial vegetation island (AVI) were compared to those of the nearby pelagic lake waters in order to evaluate the possibility of the AVI as a eco-technological measure for water quality improvement and restoration of littoral zone in man-made reservoirs. There was not a significant difference in the total number of bacteria, but the number of active (viable) bacteria within the AVI was about 0.7 to 4.1 times higher than nearby pelagic lake water. The ratio of the number of active bacteria versus the total number of bacteria was also higher in the AVI than nearby pelagic lake water. The activities of ${\beta}$-glucosidase and phosphatase were 1.0 to 13.1 and 0.8 to 7.3 times higher respectively in the AVI than nearby pelagic lake water, showing that microorganisms were more active within the AVI. The bacterial communities of the two waters, examined by FISH method, did not indicate a clear difference in the springtime when the growth of macrophytes was immature, but during summer and fall it showed a clear difference indicating the formation of distinct bacterial community within the AVI compared to nearby lake water. From the results of this study, we conclude that AVI can contribute to make up the littoral ecosystem which show rapid cycling of matters through active detritus food chain in the dam reservoirs which have unstable aquatic ecosystem due to short hydraulic residence time and to strengthen the self-purification capacity of the lake.

• 미생물학회지
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• 제46권3호
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• pp.255-261
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• 2010

남태평양에 서식하는 두 종의 해면 Hyrtios sp. 604와 Callyspongia sp. 612로부터 16S rDNA DGGE 방법을 이용하여 공생세균 군집의 다양성을 분석하였다. DGGE band로부터 염기서열 분석 결과, Hytrios sp. 604의 공생세균은 Alphaproteobacteria, Gammaproteobacteria, Acidobacteria, Actinobacteria, Chloroflexi, Cyanobacteria, Firmicutes로 나타났으며, Callyspongia sp. 612의 공생세균 그룹은 Alphaproteobacteria, Gammaproteobacteria, Chloroflexi, Cyanobacteria로 나타났다. 풍부한 이차대사산물의 생산자로 보고된 Hyrtios 해면 속의 Hyrtios sp. 604는 Callyspongia sp. 612에 비해 더 다양한 공생세균 군집을 나타내었으며 주요 공생세균 군집으로 Actionobacteria가 포함되었다. 동일 지역에 서식하나 화학적 특성이 다른 두 해면 종의 세균 군집은 서로 다른 것으로 나타났다. 발견된 공생세균의 염기서열은 90% 이상이 uncultured clone들과 높은 상동성을 나타내었다.