• Korean Journal of Veterinary Service
• /
• v.35 no.4
• /
• pp.289-294
• /
• 2012

Mycoplasmas are highly fastidious bacteria, difficult to culture and slow growing. Infections with Mycoplasma species can cause a variety of problems in living organisms and in vitro cell cultures. In this study, we investigated the usefulness of a genus-specific consensus PCR analysis method to detect Mycoplasma species. The developed consensus primer pairs MycoF and MycoR were designed specifically to amplify the 16S ribosomal RNA gene (rRNA) of Mycoplasma species by the optimized PCR system. The developed consensus PCR system effectively amplified 215 bp of Mycoplasma genus-specific region of 16S rRNA. In conclusion, we recommend this consensus PCR for monitoring Mycoplasma species in animals, human and cell culture system.

• Reproductive and Developmental Biology
• /
• v.39 no.1
• /
• pp.1-6
• /
• 2015

Luteolysis is a cyclical regression of the corpus luteum in many non-primate mammalian species. Prostaglandin $F_2{\alpha}$($PGF_2{\alpha}$) from the uterus and ovary induces functional and structural luteolysis in bovine. The action of $PGF_2{\alpha}$ is mediated by $PGF_2{\alpha}$ receptor located on the luteal steroidogenic and endothelial cell membranes. $PGF_2{\alpha}$ plays an important role in regulating nitric oxide production in endothelial cells of the bovine corpus luteum. Nitric oxide production and nitric oxide synthase activity are stimulated and induced by $PGF_2{\alpha}$ in luteal endothelial cells. Moreover, the reactive oxygen species inhibits progesterone secretion in bovine luteal cells and induces apoptosis. Thus, the interaction between $PGF_2{\alpha}$ and reactive oxygen species provides important aspects in physiology of the corpus luteum forfunctional and structural luteolysis.

• Genomics & Informatics
• /
• v.21 no.3
• /
• pp.39.1-39.15
• /
• 2023

DNA barcoding without assessing reliability and validity causes taxonomic errors of species identification, which is responsible for disruptions of their conservation and aquaculture industry. Although DNA barcoding facilitates molecular identification and phylogenetic analysis of species, its availability in clariid catfish lineage remains uncertain. In this study, DNA barcoding was developed and validated for clariid catfish. 2,970 barcode sequences from mitochondrial cytochrome c oxidase I (COI) and cytochrome b (Cytb) genes and D-loop sequences were analyzed for 37 clariid catfish species. The highest intraspecific nearest neighbor distances were 85.47%, 98.03%, and 89.10% for COI, Cytb, and D-loop sequences, respectively. This suggests that the Cytb gene is the most appropriate for identifying clariid catfish and can serve as a standard region for DNA barcoding. A positive barcoding gap between interspecific and intraspecific sequence divergence was observed in the Cytb dataset but not in the COI and D-loop datasets. Intraspecific variation was typically less than 4.4%, whereas interspecific variation was generally more than 66.9%. However, a species complex was detected in walking catfish and significant intraspecific sequence divergence was observed in North African catfish. These findings suggest the need to focus on developing a DNA barcoding system for classifying clariid catfish properly and to validate its efficacy for a wider range of clariid catfish. With an enriched database of multiple sequences from a target species and its genus, species identification can be more accurate and biodiversity assessment of the species can be facilitated.

• Asian-Australasian Journal of Animal Sciences
• /
• v.13 no.10
• /
• pp.1422-1428
• /
• 2000

This investigation was conducted to evaluate the shrimp flesh (SF) and shrimp by-product (SB) of the most abundant shrimp species (Metapenaeus affinis, Penaeus semisulcatus and Penaeus monodon) caught in Central Vietnam, with the emphasis on yield, gross and amino acid (AA) composition and effect of heat treatment. The results showed that the mean edible SF and SB (head and shells with tail) yields of the three shrimp species averaged 56.7 and 43.3%, respectively, of the total wet body weight, with the M. affinis generating the highest by-product yield (45.7%) and P. semisulcatus (40.6%) the lowest. Significant differences in dry matter (DM), crude protein (CP) and ash content were found between SF and SB. The DM content of SF (21.5%) was lower than of SB (24.9%) and the ash content (on a DM basis) of the SB in all shrimp species was more than three times that of the SF (p<0.05), whereas the CP content was almost twice as high in the SF as compared with the SB (p<0.05). The SB of the three species contained (on a DM basis) between 44.0 and 49.8% CP (p<0.05) and between 13.5 and 18.1% chitin (p<0.05). The Ca content of SB differed also between species (p<0.05). On average, the sum of AA in SB corresponded to 89.3% of the CP and essential AA accounted for about 50% of the total AA. The most abundant AA were arginine, aspartic and glutamic acids, which accounted for 33% of the total AA. Minor, but significant differences in some AA concentrations of SB between species were observed (p<0.05). With the exception of the DM and ether extract content, all other chemical constituents of entire shrimp, SF and SB were not significantly affected by heat treatment (p>0.05).

• Journal of Species Research
• /
• v.6 no.spc
• /
• pp.164-171
• /
• 2017

A research project entitled "Discovery of Korean Indigenous Species" was launched in 2006, and has been carried on as a continuous project until now. The main purpose of this project is to find undiscovered species on the Korean peninsula and ultimately register these species in the "National List of Species of Korea". In this paper, we present 79 unrecorded species of the Korean metazoans. All species were obtained from the final reports of "Discovery of Korean Indigenous Species" which were performed during the first five years of the project, 2006 to 2010.

• Animal Systematics, Evolution and Diversity
• /
• v.31 no.3
• /
• pp.160-175
• /
• 2015

The echolocation calls of bats can provide useful information about species that are generally difficult to observe in the field. In many cases characteristics of call structure can be used to identify species and also to obtain information about aspects of the bat's ecology. We describe and compare the echolocation call structure of 14 of the 21 bat species found in Korea, for most of which the ecology and behavior are poorly understood. In total, 1,129 pulses were analyzed from 93 echolocation call sequences of 14 species. Analyzed pulses could be classified into three types according to the pulse shape: FM/CF/FM type, FM type and FM/QCF type. Pulse structures of all species were consistent with previous studies, although geographic variation may be indicated in some species. Overall classification rate provided by the canonical discriminant analysis was relatively low. Especially in the genera Myotis and Murina, there are large overlaps in spectral and temporal parameters between species. On the other hand, classification rates for the FM/QCF type species were relatively high. The results show that acoustic monitoring could be a powerful tool for assessing bat activity and distribution in Korea, at least for FM/QCF and FM/CF/FM species.

• Reproductive and Developmental Biology
• /
• v.39 no.4
• /
• pp.105-115
• /
• 2015

Toll-like receptor 7 (TLR7) is critical for the triggering of innate immune response by recognizing the conserved molecular patterns of single-stranded RNA (ssRNA) viruses and mediated antigenic adaptive immunity. To understand how TLR7 distinguish pathogen-derived molecular patterns from the host self, it is essential to be able to identify TLR7 receptor interaction interfaces, such as active sites or R848-agonist binding sites. The functional interfaces of TLR7 can serve as targets for structure-based drug design in studying the TLR7 receptor's structure-function relationship. In contrast to mammalian TLR7, chicken TLR7 (chTLR7) is unknown for its important biological function. Therefore, it has been targeted to mediate contrasting evolutionary patterns of positive selection into non-synonymous SNPs across eleven species using TLR7 conservation patterns (evolutionary conserved and class-specific trace residues), where protein sequence differences to the TLR7 receptors of interest record mutation that have passed positive section across the species. In this study, we characterized the Lys609 residue on chTLR7-ECD homodimer interfaces to reflect the current tendency of evolving positive selection to be transfer into a stabilization direction of the R848-agonist/chTLR7-ECDs complex under the phylogenetically variable position across species and we suggest a potential indicator for contrasting evolutionary patterns of both the species TLR-ECDs.

• Animal Systematics, Evolution and Diversity
• /
• v.36 no.1
• /
• pp.17-24
• /
• 2020

Doryctinae is a large and heterogeneous group with more than 1,000 described. It is idiobiont ectoparasitoids on the larvae of wood-boring and xylophagous beetles. Some species attack larvae of wood boring lepidoptera. In the present study, fifteen species belonging to eight genera of the subfamily Doryctinae are recorded for the first time from Korea: Doryctes Haliday (2 species), Eodendrus Belokobylskij (1 species), Heterospilus Haliday (4 species), Monolexis Förster (1 species), Neurocrassus Snoflak (2 species), Rhoptrocentrus Marshall (1 species), Sonanus Belokobylskij et Konishi (1 species), Spathius Nees (3 speices). The genera Eodendrus Belokobylskij, Monolexis Förster, Rhoptrocentrus Marshall, Sonanus Belokobylskij et Konishi and fifteen species are reported for the first times from Korea. Diagnosis and host information are provided.

• Korean Journal of Agricultural Science
• /
• v.38 no.3
• /
• pp.445-452
• /
• 2011

The object of this experiment was to investigate the food habits of Korean native goats fed with various roughage sources. The experimental trials were conducted at Unbong Animal Genetic Resources Station in 2008. The experimental roughages include five sources and 25 species in all; grasses and legumes: 5 species (mixed grasses, orchardgrass, tall fescue, alfalfa, white clover), native grasses and weeds: 5 species (mixed native grasses, Miscanthus sinensis Anderss, Arundinella hirta (Thunb.) Tanaka, Barnyard grass, short awn, forage crops and straw: 5 species (barley + hairy vetch, wheat + hairy vetch, rye silage, barley silage, baled rice straw), browse and fallen leaves: 5 species (Mixed browse, Oriental white oak, Quercus serrta Thunb., Oriental cherry fallen leaves, Japanese chestnut fallen leaves), and imported hay and straw: 5 species(timothy hay, tall fescue straw, annual ryegrass straw, klinegrass hay, alfalfa hay). Ten Korean native goats were selected which had nearly the same body weight (average $24{\pm}2.8$ kg). The chemical composition and dry matter digestibility of each roughage source and species were significantly different at the sampling area, plant species, growth stages and cutting period (p<0.05). Among all the 25 species of roughages, the favorite intake species order by Korean native goat was observed like this: Quercus aliena, Querancas serrta Thunb and Mixed browse, which was a lower intake compared to other domestic herbivores. The Korean native goats ate more roughages which had low fibrous contents, but high dry matter digestibility. The Korean native goats ate more roughages which had low fibrous contents, but high dry matter digestibility. On the other hand, compared to each roughage source, total intake amount by Korean native goats was showed as browse and fallen leaves (33.1%) among trials roughage sources. Based on these results, the food habit of Korean native goats seems to be closer to the browser.

• Journal of People, Plants, and Environment
• /
• v.24 no.4
• /
• pp.389-401
• /
• 2021

Background and objective: The purpose of this study is to investigate the ecological status of six areas around Geumgang River that used to be farmlands before they were restored as a riverine ecobelt. This study aims to analyze the correlation between the location environment and ecological status of the sites to identify the environmental factors affecting them. Methods: The sites are classified into four types according to restoration: terraced paddy fields, flat paddy fields, artificial wetland, and landscape forest. The survey items were divided into land use status, plant ecology, and animal ecology. Results: In terms of plant ecology, terraced paddy fields showed favorable naturality with the rate of native species above 90% and the naturalization index below 10%. In terms of animal ecology, the total number of species found in these areas was biggest in terraced paddy fields, followed by flat paddy fields, artificial wetland, and landscape forest. Regarding species diversity, terraced paddy fields also showed abundant species with an average of 1.05 to 1.09. The results of the correlation analysis showed that the forest area around the sites had the most significant effect on species diversity. The grassland and open water area showed a positive correlation with the total number of animal species and the number of dragonflies, confirming that the marshy grassland had a positive effect. As the cultivated land and urbanized area around the sites increased, it had a negative effect on the distribution of native species and the number of animal species that appeared, and a positive effect on the naturalization index. Conclusion: It is necessary to establish preemption and restoration plans for sites such as grasslands adjacent to the forest and terraced paddy fields in order to promote resilience of the diverse species returning to the purchased lands.