• Title/Summary/Keyword: amplification factor

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The Virulence Factors of Vibrio spp. (비브리오의 병원성 인자에 관한 연구)

  • Oh, Yang-Hyo;Kim, Yung-Bu;Park, Young-Min;Kim, Min-Jung;Cha, Mi-Sun;Kim, Young-Hee;Lim, Eun-Gyoung
    • The Journal of the Korean Society for Microbiology
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    • v.34 no.6
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    • pp.513-518
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    • 1999
  • A total of 113 Vibrio sp. strains were examined for plasmid content which were subjected to digestion with restriction enzymes. About the 55% Vibrio spp. have the plasmid more than one. Most of these plasmid various derivatives ranged from $2.4\;kb{\sim}23\;kb$, especially two strains of V. mimicus and one strain of V. furnissii carried one high-molecular weight plasmid (molecular weight ranging between $70\;kb{\sim}100\;kb$). Results of restriction analysis for plasmid of this three strains were by no means the rule. For detection of tdh and ctx gene, the virulence factor involved in the pathogenesis, we carried out the TDH and CT assay, PCR amplification, and hybridization. A total 11 strains were produced TDH, involved in 9 strains of V. parahaemolyticus and 1 strain of V. alginolyticus from clinical isolates and 1 strains of V. mimicus from environmental isolates. In the experiments of tdh gene detection, in all, 3 strains of V. parahaemolyticus from clinical isolates and 2 strains from environmental isolates could be successfully amplified in 400 bp by PCR. The PCR results were consistent with DNA hybridization tests. In the experiments of CT assay, in all, 3 strains of V. cholerae from clinical isolate and 1 strain of V. cholerae from environmental isolates were observed CT-producing. These CT-producing strains amplified in 302 bp by PCR for the detection of ctx gene. All CT-producing strains hybridized with digoxigenin-labeled DNA probe, while CT-negative strains did not hybridize. Also hybridization tests results for detection of ctx gene consistent with PCR.

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Hair Growth Effect of Herbal Extract Mixture Ahn Tonic in Mice (한방추출 천연혼합물의 탈모 유발 쥐에 대한 발모 효과)

  • Kwak, Jin Young;Koh, Young Mee;Ahn, Ji Sup;Park, Yang Chun;Ahn, Taek Won
    • Journal of Physiology & Pathology in Korean Medicine
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    • v.33 no.6
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    • pp.363-369
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    • 2019
  • This paper aims to assess the effect of herbal extract mixture, Ahn Tonic, on hair growth and examine the stability of this percutaneous hair growth ointment. The hair on the back of the mice C57b1/6N was removed, and 1% of the TXN(testosterone) was then applied for a week to prevent the hair growth. The experimental group was then treated with Ahn Tonic, 0.2 mL per day. The degree of newly grown hair was observed with a vernier caliper. We also measured the proportion of the newly growing hair section to the entire shaved section in the 4th week and 8th week by distinguishing the section turning black from the shaved area. To observe the effect of the test chemical product on hair follicles and hair roots, the biopsy was executed between week 4 and week 8. Gene expressions, which operate as a factor for growing hair in the skin tissues extracted from each experimental animals, were also observed through a real-time PCR gene amplification method. The results showed that the Ahn tonic group had statistically significant hair restoring effect compared to the control group in terms of microscopy, biopsy, and gene expressions. Ahn Tonic is considered to have an impact on the hair growth.

Comparative Study on the Quantity Economic Analysis of Apartment Frames Using SDS Result of Dynamic Centrifuge Test at Pile Foundation (말뚝기초의 동적실험결과를 사용한 아파트 골조의 경제성 비교분석)

  • Kim, Sang-Yeon;Park, Jong-Bae;Park, Yong-Boo
    • Land and Housing Review
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    • v.6 no.3
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    • pp.147-152
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    • 2015
  • Site coefficient and amplification factor of current domestic Seismic Design Code based on American Seismic Code, have no consideration for the domestic ground condition in which the base rock is normally placed within 30m form the surface. By previous studies, the measured spectral acceleration of the result of dynamic centrifugal test and analysis was smaller than the design spectral acceleration for the period over 1.5 sec. Accordingly, in this study structural analysis and design using dynamic centrifugal test result for pile foundation were achieved, and the quantity of concrete and reinforcement of wall frame was compared with each other. Comparison results of cost using KBC the design spectral acceleration of SC, SD site and SDS, the quantity of reinforcement using SDS for SD site was 17~23% smaller than using the design code SD site.

Assessment of Response Spectrum by Dynamic Centrifuge Test for the Pile Foundation into the Sand (동적 원심모형실험에 의한 사질토에 근입된 말뚝지지 기초의 응답 스펙트럼 분석)

  • Park, Yong-Boo;Park, Jong-Bae;Kim, Sang-Yeon;Kim, Dong-Soo
    • Land and Housing Review
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    • v.5 no.1
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    • pp.35-40
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    • 2014
  • Site coefficient and amplification factor of current domestic Seismic Design Code (KBC-2009) have no consideration for the domestic ground condition in which the base rock is normally placed within 30m form the surface. Accordingly, in this study dynamic centrifugal test and analysis for pile foundation into sand and upper structure were achieved. and the response spectrums of free surface and basement were compared with each other. Within the period 1 sec., the measured spectral acceleration of free surface and basement was bigger than the design spectral acceleration of SC and SD site. However the measured spectral acceleration of free surface and basement for the period over 1.5 sec. was smaller than the design spectral acceleration of SC site. There was no severe difference of spectral acceleration according to the upper structure, embedded depth of foundation and free surface conditions. Consequently, normal domestic apartment housing for the period range over 1.5sec. could be design more economically applying these test result.

Identification of a Novel PGE2 Regulated Gene in SNU1 Gastric Cancer Cell

  • Park, Min-Seon;Kim, Hong-Tae;Min, Byung-Re;Kimm, Ku-Chan;Nam, Myeong-Jin
    • BMB Reports
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    • v.33 no.2
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    • pp.184-187
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    • 2000
  • Prostaglandin $E_2$ ($PGE_2$) plays an important role in the regulation of various gastric functions, and the growth-inhibitory activities on tumor cells are studied in vitro and in vivo. Although the mechanisms have attracted many researchers in the past decade, the molecular mechanisms of cell cycle arrest, or induction of apoptosis by $PGE_2$, is unclear. We investigated the effects of $PGE_2$ on the growth of the human gastric carcinoma cell line SNU1 and genes that are regulated by $PGE_2$ and isolated them using differential display RT-PCR (DD RT-PCR). FACS analysis suggested that SNU1 cells were arrested at the G1 phase by $PGE_2$ treatment. This growth inhibitory effect was in a time- and dose-dependent manner. Treatment of SNU1 cells with $10\;{\mu}g/ml$ $PGE_2$, followed by DD RT-PCR analysis, revealed differently expressed bands patterns from the control. Among the differently expressed clones, we found an unidentified cDNA clone (HGP-27) overexpressed in $PGE_2$-treated cells. The full-length cDNA of HGP-27 was isolated using RACE, which consisted of a 30-nt 5'-noncoding region, a 891-nt ORF encoding the 296 amino acid protein, and a 738-nt 3'-noncoding region including a poly(a) signal. This gene was localized on the short arm of chromosome number 11. Using the Motif Finder program, a myb-DNA binding repeat signature was detected on the ORF region. The COOH-terminal half was shown to have similarity with the $NH_3$-terminal domain of thioredoxin (Trx). This relation between HGP-27 and Trx implied a potential role for HGP-27 in modulating the DNA binding function of a transcription factor, myb.

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Identification of a pr 1-like Gene of Entomopathogenic Fungus, Beauveria bassiana F-101 Isolated from Thecodiplosis japonensis

  • Shin Sang Chul;Roh Jong Yul;Shim Hee Jin;Kim Soon Kee;Kim Chul Su;Park Il Kwon;Jeon Mun Jang;Je Yeon Ho
    • International Journal of Industrial Entomology and Biomaterials
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    • v.10 no.2
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    • pp.131-136
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    • 2005
  • Beauveria bassiana F-101, which has high toxicity toward Acantholyda parki as well as Thecodiplosis japonensis, was an isolate to develop an alternative control system against the major forest pests. Up to now, in B. bassiana, only one pr1 gene has been isolated and characterized. Therefore, we here reported the identification of a pr1-like gene, which would be a factor of toxicity from B. bassiana F-101. The oligonucleotides for the amplification of the pr1-like gene, were chosen based on the conserved regions of the subtilisin family enzymes, pr1 genes of B. bassiana and Metarhizium anisopliae, and proteinase K of Tritirachium album. The cloned PCR fragment had 1111 bp including 52 bp intron. The deduced Pr1-like peptide showed a low identity with Pr1s of entomopathogenic fungi such as B. bassiana Pr1 (BbPr1) and M. anisopliae Pr1 (MaPr1) as well as the proteinase K of T. album (TaPrK). Instead, the deduced peptide had a substantially high amino acid sequence identity $(>65\%)$ with the serine proteases of Magnaporthe grisea (MgSPM1) and Podospora anserina (PaPspA). These results, therefore, appear to suggest that the putative Pr1-like peptide of B. bassiana F-101 belongs to the subtilisin-like serine protease family and may be a novel gene.

Possible Prognostic Role of HER2/Neu in Ductal Carcinoma In Situ and Atypical Ductal Proliferative Lesions of the Breast

  • Daoud, Sahar Aly;Ismail, Wesam Maghawri;Abdelhamid, Mohamed Salah;Nabil, Tamer Mohamed;Daoud, Sahar Aly
    • Asian Pacific Journal of Cancer Prevention
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    • v.17 no.8
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    • pp.3733-3736
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    • 2016
  • HER2/neu is a well-established prognostic and predictive factor for invasive breast cancer. However, the role of HER2/neu in ductal breast carcinoma in situ (DCIS) is debated and recent data have suggested that it is mainly linked to in situ local recurrence. Although molecular data suggest that atypical ductal hyperplasia (ADH) and duct carcinoma in situ (DCIS) are related lesions, albeit with vastly different clinical implications, the role of HER2/neu expression in atypical ductal hyperplasia is not well defined either. The aim of this study was to evaluate over expression of HER2/neu in DCIS and cases of ADH in comparison with invasive breast carcinoma. Archival primary breast carcinoma paraffin blocks (n=15), DCIS only (n=10) and ductal epithelial hyperplasia and other breast benign lesions (n=25) were analyzed for HER2/neu immunoexpression. Follow up was available for 40% of the patients. HER2/neu was positive in 80%of both DCIS and invasive carcinoma, and 67% of atypical ductal hyperplasia (ADH) cases. Thus at least a subset of patients with preinvasive breast lesions were positive, which strongly suggests a role for Her2/neu in identifying high-risk patients for malignant transformation. Although these are preliminary data, which need further studies of gene amplification within these patients as well as a larger patient cohort with longer periods of follow up, they support the implementation of routine Her2/neu testing in patients diagnosed as pure DCIS and in florid ADH.

Establishment of Highly Tumorigenic Human Gastric Carcinoma Cell Lines from Xenograft Tumors in Mice

  • Song, Kyung-A;Park, Jihyun;Kim, Ha-Jung;Kang, Myung Soo;Kim, Sun Young
    • Biomedical Science Letters
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    • v.23 no.3
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    • pp.238-250
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    • 2017
  • Patient's primary tumor-derived tumor cell lines likely represent ideal tools for human tumor biology in vitro and in vivo. Here, we describe eight human gastric carcinoma cell lines derived from established tumors in vivo upon subcutaneous transplantation of primary gastric carcinoma specimens in BALB/c nude mice. These xenografted gastric tumor cell lines (GTX) displayed close similarity with primary gastric tumor tissues in their in vivo growth pattern and genomic alterations. GTX-085 cells were resistant to cisplatin, while GTX-087 was the most sensitive cell line. GTX-085 was the only cell line showing a metastatic potential. Epithelial cell adhesion molecule (EPCAM) expression was especially strong in all tissue samples, as well as in cell cultures. GTX-139, the largest tumor graft obtained after injection, displayed distinct expression of CD44v6, fibroblast growth factor receptor 2 (FGFR2), and prominin 1 (PROM1, also known as CD133). In summary, we established eight xenograft gastric cancer cell lines from gastric cancer patient tissues, with their histological and molecular features consistent with those of the primary tumors. The established GTX cell lines will enable future studies of their responses to various treatments for gastric cancer.

Characterization of the rcsA Gene from Pantoea sp. Strain PPE7 and Its Influence on Extracellular Polysaccharide Production and Virulence on Pleurotus eryngii

  • Kim, Min Keun;Lee, Sun Mi;Seuk, Su Won;Ryu, Jae San;Kim, Hee Dae;Kwon, Jin Hyeuk;Choi, Yong Jo;Yun, Han Dae
    • The Plant Pathology Journal
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    • v.33 no.3
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    • pp.276-287
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    • 2017
  • RcsA is a positive activator of extracellular polysaccharide (EPS) synthesis in the Enterobacteriaceae. The rcsA gene of the soft rot pathogen Pantoea sp. strain PPE7 in Pleurotus eryngii was cloned by PCR amplification, and its role in EPS synthesis and virulence was investigated. The RcsA protein contains 3 highly conserved domains, and the C-terminal end of the open reading frame shared significant amino acid homology to the helix-turn-helix DNA binding motif of bacterial activator proteins. The inactivation of rcsA by insertional mutagenesis created mutants that had decreased production of EPS compared to the wild-type strain and abolished the virulence of Pantoea sp. strain PPE7 in P. eryngii. The Pantoea sp. strain PPE7 rcsA gene was shown to strongly affect the formation of the disease symptoms of a mushroom pathogen and to act as the virulence factor to cause soft rot disease in P. eryngii.

One Dimensional Seismic Response Analysis on Sub-ground of Architectural Heritage in Seoul, Korea (서울지역 주요 문화재 하부 지반에 대한 일차원 지진응답해석)

  • Jeon, Seongkon;Kim, Dukmoon;Kwon, Youngcheul
    • Journal of the Korean GEO-environmental Society
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    • v.15 no.9
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    • pp.29-36
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    • 2014
  • Under the situation that the seismic vulnerability are a worsening problem in many world's megacities, the disaster preparedness including earthquake hazards is a matter of primary concern in the capital city of Korea, Seoul. Especially, because it is hard to move or dismantle the architectural heritages, the mitigation of earthquake damages is potentially more difficult than other structures. Moreover, in order to decide the proper preparedness plan against future earthquakes, it is very important to understand how soils pass the seismic waves to architectural heritages. In this paper, therefore, the ground condition and depth of bedrock was investigated by the MASW-method at heritages located in Seoul. Then one-dimensional seismic response analysis was conducted based on the distribution of shear wave velocity. As the major result of analyses, peak acceleration, site amplification factor and natural period are proposed in each site for recurrence period.