• 제목/요약/키워드: amino acid sequence

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Kocuria gwangalliensis 유래 phytoene desaturase 유전자의 cloning과 특성 연구 (Molecular Cloning and Characterization of the Gene Encoding Phytoene Desaturase from Kocuria gwangalliensis)

  • 서용배;최성석;남수완;김군도
    • 한국미생물·생명공학회지
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    • 제45권3호
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    • pp.226-235
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    • 2017
  • Phytoene, lycopene, ${\beta}-carotene$과 같은 카로티노이드는 식품의 착색제나 영양보조제, 사료첨가제, 화장품의 원료로 사용된다. 이전 연구에서 본 연구진은 분홍색의 색소를 생산하는 새로운 해양 세균인 K. gwangalliensis를 분리 동정하였다. Phytoene desaturase (CrtI) 효소는 crtI 유전자에 암호화되어 있으며, phytoene을 lycopene으로 전환하며, 카로티노이드 합성 초기 단계에 있어서 필수적이다. CrtI는 카로티노이드 생합성 조절의 주요 효소 중 하나이며, 다양한 카로티노이드를 생합성하는 생물들의 카로티노이드 생합성 경로에 있어서 속도 조절 단계에 관련이 있다. 본 논문에서는 K. gwangalliensis로부터 lycopene 생합성을 담당하는 crtI 유전자를 클로닝 하였으며, 이 유전자는 1,584개의 염기서열을 가지며, 527개의 아미노산을 암호화하고 있다. crtI 유전자의 염기 서열을 Kocuria rhizophila와 Myxococcus xanthus를 포함한 다른 종의 염기 서열과 비교한 결과, 진화 과정에서 잘 보존되어 있음을 확인하였다. crtI 유전자를 포함하는 발현 플라스미드를 구축하여 발현시킨 결과, 이 플라스미드를 함유하는 대장균은 약 57 kDa의 재조합 단백질을 생산화였으며, 이는 phytoene desaturase의 분자량에 해당한다. lycopene의 생합성은 lycopene 생합성에 필요한 crtE, crtB 유전자를 포함한 pRScrtEB plasmid를 E. coli에 형질전환 했을 때, Escherichia coli에서 합성되는 것을 확인하였다. 이 연구의 결과는 분자 수준에서 K. gwangalliensis CrtI의 1차 구조에 대한 폭 넓은 지식 기반을 제공할 것이다.

재래귤의 성숙시기별 리모노이드 쓴맛 표시자로서 limonoid UDP-glucosyltransferase 발현 분석 (Analysis of Expression Pattern of the Limonoid UDP-glucosyltransferase Gene as an Indicator for Delayed Bitterness from the Citrus Species Endemic in Jeju)

  • 김영미;이도승;전덕현;송연우;이동선;류기중;조문제;이동훈;김소미
    • 한국식품저장유통학회지
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    • 제18권2호
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    • pp.184-190
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    • 2011
  • Limonoid UDP-glucosyltransferase (LUGT)는 리모노이드에 포도당을 붙여줌으로써 궁극적으로 감귤에서 발생하는 limonoid bitterness를 제거해 주는 효소이다. 본 연구에서는 10종의 제주산 감귤로부터 LUGT유전자를 PCR 클로닝하고 그 염기서열을 비교했다. 실험에 사용한 모든 종에서 카르복실기 말단에 식물 당전달 효소에서 발견되는 전형적인 아미노산 서열인 p1ant secondary product glycosyltransferase(PSPG) 모티브가 존재했다. 아미노산 서열에 의한 계통수 분석을 실시해본 결과 10종의 제주산 감귤은 3그룹으로 분류했다. 각 그룹의 대표적인 3종 재래귤 품종 빈귤, 동정귤, 홍귤의 성숙 시기별 LUGT 발현양상은 delayed bitterness가 거의 없는 궁천과는 다른 양상을 나타내었다. 이러한 결과들은 빈귤, 동정귤, 홍귤과 같은 일부 재래귤 품종에서의 쓴맛은 LUGT발현이 지연됨에 따라 발생하는 delayed bitterness에 기인할 수 있음을 시사하고 있다.

재배 지대에 따른 참당귀의 추대 변이와 FLC 유전자 특성 (Variation of Bolting at Cultivation of Different Regions and Molecular Characterization of FLC homologs in Angelica gigas Nakai)

  • 김영국;여준환;안태진;한신희;안영섭;박충범;장윤희;김정국
    • 한국약용작물학회지
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    • 제20권5호
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    • pp.359-364
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    • 2012
  • This study were carried out to find bolting response of cultivation in different regions and to isolate FLC (FLOWERING LOCUS C) homologs in Angelica gigas Nakai. The mean temperature of different regions, ordering in altitude, were as follows: 100 m > 350 m > 530 m > 700 m. The largest amount of rainfall was occurred in the region of 350 m while the longest time of sunshine was occurred in the region of 100 m. The content of soil chemical properties in regions showed pH 6.2 ~ 7.4, T-N 0.17 ~ 26, organic mater $1{\sim}32gkg^{-1}$, $P_2O_5$ ${151{\sim}664_{mgkg}}^{-1}$, exchangeable potassium and calcium and magnesium were 0.78 ~ 1.15, 3.9 ~ 10.0, ${0.7{\sim}3.2_{cmol}}^{+kg-1}$. L5 line of A. gigas was occurred in bolting at all regions, but the bolting ratio was 60.0% in 700 m region with non-mulching treatment. Manchu of A. gigas was not occurred in bolting at all regions. The accumulation bolting ratio of L5 line by non-mulching was higher than that of mulching as 90.4% and 72.8% in 100 m region. The MADS-box transcription factor FLC is one of the well-known examples as a strong floral repressor. We decided to isolate FLC homologs from A. gigas as a starting point of flowering mechanism research of this plant. We have isolated two RT-PCR products which showed very high amino acid sequence homology to Arabidopsis FLC.

밤벡$^{(R)}$ 정 10밀리그람(염산밤부테롤 10밀리그람)에 대한 밤부콜 정 10밀리그람의 생물학적동등성 (Bioequivalence of Bambucol Tablet 10 mg to $Bambec^{(R)}$ Tablet 10 mg (Bambuterol Hydrochloride 10 mg))

  • 조혜영;최지훈;류희두;이용복
    • 한국임상약학회지
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    • 제20권3호
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    • pp.235-241
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    • 2010
  • Bambuterol hydrochloride, dimethylcarbamic acid 5-[2-(1,1-dimethylethyl)amino-1-hydroxyethyl]-1,3-phenylene ester hydrochloride, is the prodrug of active ${\beta}_2$-adrenergic metabolite terbutaline. The purpose of the present study was to evaluate the bioequivalence of two bambuterol hydrochloride tablets, $Bambec^{(R)}$ tablet 10 mg (Yuhan Co., Ltd.) and Bambucol tablet 10 mg (Sam Chun Dang Pharm. Co., Ltd.), according to the guidelines of Korea Food and Drug Administration (KFDA). In vitro release of bambuterol from two bambuterol hydrochloride formulations was tested using KP VIII Apparatus II method with various dissolution media. Twenty eight healthy male Korean volunteers, $23.86{\pm}1.65$ years in age and $68.98{\pm}9.58$ kg in body weight, were divided into two groups and a randomized $2{\times}2$ cross-over study was employed. After two tablets containing 10 mg as bambuterol hydrochloride were orally administered, blood samples were taken at predetermined time intervals, and the concentrations of bambuterol in serum were determined using column switching HPLC with UV detector. The dissolution profiles of two formulations were similar in all tested dissolution media. The pharmacokinetic parameters such as $AUC_t$, $C_{max}$ and $T_{max}$ were calculated, and ANOVA test with K-BE Test 2002 was utilized for the statistical analysis of the parameters using logarithmically transformed $AUC_t$, $C_{max}$ and untransformed $T_{max}$. The results showed that the differences between two formulations based on the reference drug, $Bambec^{(R)}$, were -8.10%, -3.82% and 12.65% for $AUC_t$, $C_{max}$ and $T_{max}$, respectively. There were no sequence effects between two formulations in these parameters. The 90% confidence intervals using logarithmically transformed data were within the acceptance range of log 0.8 to log 1.25 (i.e., log 0.8093~log 1.0302 and log 0.8564~log 1.1280 for $AUC_t$ and $C_{max}$, respectively). Thus, the criteria of the KFDA bioequivalence guideline were satisfied, indicating Bambucol tablet 10 mg was bioequivalent to $Bambec^{(R)}$ tablet 10 mg.

A LysM Domain-Containing Protein LtLysM1 Is Important for Vegetative Growth and Pathogenesis in Woody Plant Pathogen Lasiodiplodia theobromae

  • Harishchandra, Dulanjalee Lakmali;Zhang, Wei;Li, Xinghong;Chethana, Kandawatte Wedaralalage Thilini;Hyde, Kevin David;Brooks, Siraprapa;Yan, Jiye;Peng, Junbo
    • The Plant Pathology Journal
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    • 제36권4호
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    • pp.323-334
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    • 2020
  • Lysin motif (LysM) proteins are reported to be necessary for the virulence and immune response suppression in many herbaceous plant pathogens, while far less is documented in woody plant pathogens. In this study, we preliminarily characterized the molecular function of a LysM protein LtLysM1 in woody plant pathogen Lasiodiplodia theobromae. Transcriptional profiles revealed that LtLysM1 is highly expressed at infectious stages, especially at 36 and 48 hours post inoculation. Amino acid sequence analyses revealed that LtLysM1 was a putative glycoprotein with 10 predicted N-glycosylation sites and one LysM domain. Pathogenicity tests showed that overexpressed transformants of LtLysM1 displayed increased virulence on grapevine shoots in comparison with that of wild type CSS-01s, and RNAi transformants of LtLysM1 exhibited significantly decreased lesion length when compared with that of wild type CSS-01s. Moreover, LtLysM1 was confirmed to be a secreted protein by a yeast signal peptide trap assay. Transient expression in Nicotiana benthamiana together with protein immunoblotting confirmed that LtLysM1 was an N-glycosylated protein. In contrast to previously reported LysM protein Slp1 and OsCEBiP, LtLysM1 molecule did not interact with itself based on yeast two hybrid and co-immunoprecipitation assays. These results indicate that LtLysM1 is a secreted protein and functions as a critical virulence factor during the disease symptom development in woody plants.

Influence of Dry Roasting of Whole Faba Beans (Vicia faba) and Whole Lupin Seeds (Lupinus albus) on Rumen Disappearance and Estimated Intestinal Digestion of CP Using the Optimal Three-Step In Vitro Technique in Dairy Cows

  • Yn, P.;Egan, A.R.;Lenry, B.J.
    • Asian-Australasian Journal of Animal Sciences
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    • 제12권7호
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    • pp.1054-1062
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    • 1999
  • The effects of dry roasting whole faba beans (WFB) and whole lupin seeds (WLS) at 110, 130 or $150{^{\circ}C}$ for 15, 30 or 45 min on rumen (RDCP%), estimated intestinal (IDCP%) and total tract disappearance of CP (TDCP%) and intestinal availability (IARUCP%) of rumen undegraded CP (RUCP%) were determined. The RDCP values were estimated by in sacco technique by incubating nylon bags for 8, 12 and 24 h in the rumen of dairy cows. The IDCP and IARUCP values were estimated using a sequence of ruminal incubation, in vitro incubation in acid-pepsin for 1 h and then in pancreatin for 24 h of three-step in vitro procedure technique. Dry roasting at 130 and $150^{\circ}C$ decreased RDCP with correspondingly increasing IDCP. The IDCP value generally increased from 12.3(raw) to 8.6, 14.8 and 39.6% (WFB) and from 28.3 (raw) to 33.7, 36.2 and 56.2% (WLS) at 8 h rumen incubation; from 2.9 (raw) to 2.9, 4.6 and 23.3% (WFB) and from 19.6 (raw) to 19.0, 24.0 and 46.6% (WLS) at 12 h rumen incubation; from 1.3 (raw) to 1.9, 1.7 and 11.0% (WFB) and from 4.4 (raw) to 4.2, 10.7 and 36.7% (WLS) at 12 h rumen incubation as the temperatures rose to 110, 130 and $150{^{\circ}C}$ respectively. The TDCP values were always high and increased by time in the rumen, the average values of which were 97.9, 96.6; 99.2, 96.9 and 99.6, 98.7% for WFB and WLS, respectively, at 8, 12 and 24 h rumen incubation. But within the same retention time, TDCP was generally unchanged. The average IARUCP increased from 87.3 (raw) to 87.4, 88.7 and 92.0% (WFB); from 87.6 (raw) to 88.9, 91.5 and 93.0% (WLS) at roasting temperatures of 110, 130 and $150{^{\circ}C}$, respectively. It was concluded that dry roasting can shift the digestion of CP from rumen to the lower gastrointestinal tract without depressing the digestion of RUCP. The best processing condition in this study was dry roasting at $150{^{\circ}C}$ for 45 min in terms of effects on the disappearances and availability of CP. Research data on intestinal availability of individual amino acids need to be further investigated.

대구고니 단백질의 효소적 가수분해물로부터 항산화성 펩타이드의 분리${\cdot}$정제 및 특성 (Purification and Characterization of Antioxidative Peptides from Enzymatic Hydrolysate of Cod Teiset Protein)

  • 김세권;최영일;박표잠;최정호;문성훈
    • 한국수산과학회지
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    • 제33권3호
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    • pp.198-204
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    • 2000
  • 수산가공공장에서 원료어 처리시 대량으로 발생하는 비가식부의 하나인 대구의 고니부분을 효율적으로 이용하기 위하여 단백질을 효소로 가수분해시킨 후 한외여과막을 사용하여 분자량별로 분획하였으며, 이들 가수분해물 중 항산화활성이 뛰어난 펩타이드를 이온교환 크로마토그래피, 겔크로마토그래피 및 HPLC로 분리${\cdot}$정제하여 그 아미노산 서열을 결정하였다. 여러 가지 단백질 분해효소로 분해시켜 얻은 가수분해물 중에서 항산화활성이 가장 우수한 것은 Alcalase로 천연 항산화제인 ${\alpha}-tocopherol$보다 $5{\%}$정도 뛰어난 효과를 나타내었으며, 이 가수분해물을 한외여과막으로 분자량 10 kDa, 5 kDa 및 1 kDa의 세 종류로 분리하여 항산화활성을 측정한 결과, 1 kDa의 막을 통과하여 분리된 가수분해물이 가장 높은 활성을 나타내었으며, 이는 천연항산화제인 ${\alpha}-tocopherol$보다 $10{\%}$정도 높았다. 이 획분으로 Spsephadex C-25를 사용하여 이온교환 크로마토그래피를 한 결과, $0.5{\~}1.0 M$ NaCl 용액으로 용출시 킨 분획물에 서 ${\alpha}-tocopherol$보다 약 $17{\%}$ 활성이 높게 나타났으며, 이것을 다시 Sephadex G-15로 겔여과하여 3개의 획분을 얻었으며 이 중 획분 II에서 ${\alpha}-tocopherol$보다 약 $45{\%}$가 높은 항산화활성을 보인 획분을 얻었다. 이것을 역상 HPLC를 이용하여 5차의 획분을 얻었으며, 항산화활성은 획분 A에서 ${\alpha}-tocopherol$보다 약 $53{\%}$정도 높게 나타나 가장 우수하였다. 이 획분을 capillary electrophoresis로 순도를 확인하여 아미노산 서열을 결정한 결과 Ser-Asn-Pro-Glu-Trp-Ser-Trp-Asn였다.

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Mapping, Tissue Distribution and Polymorphism of Porcine Retinol Binding Protein Genes (RBP5 and RBP7)

  • Gong, W.H.;Tang, Z.L.;Han, J.L.;Yang, S.L.;Wang, H.;Li, Y.;Li, K.
    • Asian-Australasian Journal of Animal Sciences
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    • 제21권11호
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    • pp.1544-1550
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    • 2008
  • The retinoids (vitamin A and its derivatives) play a critical role in vision, growth, reproduction, cell differentiation and embryonic development. Using the IMpRH panel, porcine cellular retinol binding protein genes 5 and 7 (RBP5 and RBP7) were assigned to porcine chromosomes 5 and 6, respectively. The complete coding sequences (CDS) of the RBP5 and RBP7 genes were amplified using the reverse transcriptase polymerase chain reaction (RT-PCR) method, and the deduced amino acid sequences of both genes were compared to human corresponding proteins. The mRNA distributions of the two genes in adult Wuzhishan pig tissues (lung, skeletal muscle, spleen, heart, stomach, large intestine, lymph node, small intestine, liver, brain, kidney and fat) were examined. A total of nine single nucleotide polymorphisms (SNPs) were identified in two genes. Three of these SNPs were analyzed using the polymerase chain reaction-restriction-fragment length polymorphism (PCR-RFLP) method in Laiwu, Wuzhishan, Guizhou, Bama, Tongcheng, Yorkshire and Landrace pig breeds. Association analysis of genotypes of these SNP loci with economic traits was done in our experimental populations. Significant associations of different genotypes of $RBP5-A/G^{63}$, $RBP5-A/G^{517}$ and $RPB5-T/C^{intron1-90}$ loci with traits including maximum carcass length (LM), minimum carcass length (LN), marbling score (MS), back fat thickness at shoulder (SBF), meat color score (MCS) and hematocrit (HCT) were detected. These SNPs may be useful as genetic markers in genetic improvement for porcine production.

Sphingomonas sp. KS 301의 Superoxide Dismutase 정제 및 특성 (Purification and Characterization of Superoxide Dismutase in Sphingomonas sp. KS 301)

  • 강희정;정재훈;최지혜;손승렬
    • 미생물학회지
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    • 제43권2호
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    • pp.83-90
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    • 2007
  • 유류오염 토양에서 난분해성 물질인 PAH (polycyclic aromatic hydrocarbon)들을 잘 분해하는 균주 중 SOD (superoxide dismutase) 활성이 높은 균주인 Sphingomonas sp. KS 301의 SOD특성을 알아보기 위하여 Ammonium sulfate 침전, DEAE-Sepharose 크로마토그래피, Superose-12 겔 여과 크로마토그래피, Uno-Q1 이온교환 크로마토그래피를 이용하여 SOD 단백질을 정제하였다. Sphingomonas sp. KS 301은 DEAE-Sepharose 크로마토그래피로 분석한 결과, 기존의 알려진 세균들과는 달리 서로 다른 5가지의 SOD 활성을 가지고 있는 것으로 나타났으며 본 연구에서는 그중 SOD III를 부분 정제하였다. 정제한 SOD III는 Mn type 및 Fe type Escherichia coli SOD와 비교했을 때 비활성도(specific activity)가 5배로 높게 나타났다. SOD III의 분자량은 SDS-PAGE에서는 23 kDa으로 측정되었으며 Superose-12겔 여과 크로마토그래피 후 native 상태의 분자량은 71 kDa으로 정제한 SOD는 3개의 소단위체로 구성되어 있는 것으로 보여진다. 정제한SOD III의 최적 pH는 7.0 이었고 $20^{\circ}C$에서 최적의 활성을 보였다. 또한 SOD의 종류를 알 수 있는 억제물질 $NaN_{3},\;H_{2}O_{2},\;KCN$를 이용한 억제효과를 살펴보았더니 $NaN_{3}$에만 억제되어 Mn type의 SOD임을 알 수 있었다. 또한 이 효소의 아미노 말단의 아미노산 서열은 Psudomonase ovalis 및 Vibrio cholerae의 SOD와 가장 유사하였다.

Molecular Cloning and Expression of a Novel Protease-resistant GH-36 $\alpha$-Galactosidase from Rhizopus sp. F78 ACCC 30795

  • Yanan, Cao;Wang, Yaru;Luo, Huiying;Shi, Pengjun;Meng, Kun;Zhou, Zhigang;Zhang, Zhifang;Yao, Bin
    • Journal of Microbiology and Biotechnology
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    • 제19권11호
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    • pp.1295-1300
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    • 2009
  • A 2,172-bp full-length gene (aga-F78), encoding a protease-resistant $\alpha$-galactosidase, was cloned from Rhizopus sp. F78 and expressed in Escherichia coli. The deduced amino acid sequence shared highest identity (45.0%) with an $\alpha$-galactosidase of glycoside hydrolase family 36 from Absidia corymbifera. After one-step purification with a Ni-NTA chelating column, the recombinant Aga-F78 migrated as a single band of ~82 and ~210 kDa on SDS-PAGE and nondenaturing gradient PAGE, respectively, indicating that the native structure of the recombinant Aga-F78 was a trimer. Exhibiting the similar properties as the authentic protein, purified recombinant Aga-F78 was optimally active at $50^{\circ}C$ and pH 4.8, highly pH stable over the pH range 5.0-10.0, more resistant to some cations and proteases, and had wide substrate specificity (pNPG, melidiose, raffinose, and stachyose). The recombinant enzyme also showed good hydrolytic ability to soybean meal, releasing galactose of $415.58\;{\mu}g/g$ soybean meal. When combined with trypsin, the enzyme retained over 90% degradability to soybean meal. These favorable properties make Aga-F78 a potential candidate for applications in the food and feed industries.