• 제목/요약/키워드: Wataru Method

검색결과 12건 처리시간 0.022초

유전자 알고리즘을 이용한 프로모터 영역의 전사인자 결합부위 패턴 탐색 ((Pattern Search for Transcription Factor Binding Sites in a Promoter Region using Genetic Algorithm))

  • 김기봉;공은배
    • 한국정보과학회논문지:소프트웨어및응용
    • /
    • 제30권5_6호
    • /
    • pp.487-496
    • /
    • 2003
  • 유전자 발현에 매우 중요한 신호역할을 하는 프로모터 영역은 여러 전사인자들이 결합하는 특정 부위들을 갖고 있다. 전사인자의 결합부위는 프로모터의 다양한 부위에 위치하며, 진화론적으로 잘 보존된 Consensus 형태의 염기서열 패턴을 띠고 있다. 본 논문은 이러한 최적의 패턴들을 탐색하기 위해 유전자 알고리즘을 기반으로 하면서, 동시에 MEME 알고리즘의 N-occurrence-per-dataset 모델의 가정과 패턴의 길이를 결정할 수 있는 Wataru 방법의 장점을 따르는 새로운 방법을 제시하고 있다. 이러한 탐색 방법은 유전체 연구자들이 임의의 DNA 염기서열 상에서 프로모터 영역을 예측하거나 특정 전사인자의 결합부위를 탐색하는데 적극 활용할 수 있다.

프로모터 영역의 전사인자 결합부위 Consensus 패턴 탐색 방법 (Search Method for Consensus Pattern of Transcription Factor Binding Sites in Promoter Region)

  • 김기봉
    • 한국산학기술학회논문지
    • /
    • 제9권5호
    • /
    • pp.1218-1224
    • /
    • 2008
  • 유전자의 상위부분에 위치하면서 해당 유전자의 발현을 제어하는 신호부위 역할을 하는 프로모터 영역은 다양한 전사인자들이 결합하는 특정 신호부위들을 갖고 있다. 이러한 전사인자 결합부위들은 프로모터 영역 내의 매우 다양한 위치에 자리잡고 있으며, 진화론적으로 잘 보존된 Consensus 형태의 염기서열 패턴을 띠고 있다. 본 논문은 이러한 Consensus 패턴 탐색에 사용되는 Wataru 방법, EM 알고리즘, MEME 알고리즘, 유전자 알고리즘 및 Phylogenetic Footprinting 기법 등에 대해 소개하고, 향후 연구방향에 대한 전망을 제시하고자 한다.

A 4-step Inference Method for Natural Language Propositions Involving Fuzzy Quantifiers and Truth Qualifiers

  • Okamoto, Wataru
    • 한국지능시스템학회:학술대회논문집
    • /
    • 한국퍼지및지능시스템학회 2003년도 ISIS 2003
    • /
    • pp.579-582
    • /
    • 2003
  • In this paper, we propose a 4-step inference method needed for constructing a natural language communication system. The method is used to obtain fuzzy quantifier Q′when QA is Fisr τ⇔ Q′(m′A) is mF is m"is τ is inferred (Q, Q′: quantifiers, A: fuzzy subject, m′, m": modifiers, y: fuzzy predicate, τ: truth qualifier). We show that Q′is resolved step by step for two types of Q, including a non-increasing type (few,...) and a non-decreasing type(most,...).

  • PDF

ITERATIVE FACTORIZATION APPROACH TO PROJECTIVE RECONSTRUCTION FROM UNCALIBRATED IMAGES WITH OCCLUSIONS

  • Shibusawa, Eijiro;Mitsuhashi, Wataru
    • 한국방송∙미디어공학회:학술대회논문집
    • /
    • 한국방송공학회 2009년도 IWAIT
    • /
    • pp.737-741
    • /
    • 2009
  • This paper addresses the factorization method to estimate the projective structure of a scene from feature (points) correspondences over images with occlusions. We propose both a column and a row space approaches to estimate the depth parameter using the subspace constraints. The projective depth parameters are estimated by maximizing projection onto the subspace based either on the Joint Projection matrix (JPM) or on the the Joint Structure matrix (JSM). We perform the maximization over significant observation and employ Tardif's Camera Basis Constraints (CBC) method for the matrix factorization, thus the missing data problem can be overcome. The depth estimation and the matrix factorization alternate until convergence is reached. Result of Experiments on both real and synthetic image sequences has confirmed the effectiveness of our proposed method.

  • PDF

Development of a Method to Estimate Distribution of Paddy Fields in Southeast Asia Using Terra/ASTER Data

  • Sasaki, Gaku;Takeuchi, Wataru;Yasuoka, Yoshifumi
    • 대한원격탐사학회:학술대회논문집
    • /
    • 대한원격탐사학회 2003년도 Proceedings of ACRS 2003 ISRS
    • /
    • pp.1180-1182
    • /
    • 2003
  • In Asian countries, paddy field is indispensable for our lives not only as a source of food but also ecosystem, hydrology, landscape, culture and global warming. In this sense it is necessary to get the detailed spatial distribution of paddy field in Asian region. Remote sensing seems to be the most appropriate tool to estimate paddy field. In this study, two Terra/ASTER images acquired on different date were used to get a map of paddy field with different planting. ASTER's 15-m resolution was found to be enough to be recognize individual paddy field . Paddies with different planting stages were divided into five types using their spectral patterns. As a result a map of paddies with different planting was obtained with tolerably high accuracy.

  • PDF

Characteristics of Non-Isolated OSAKA Converter -Characteristics of Three-Phase Soft-Switching Power Factor Corrected Converter for Large Scale Power Without Three-Phase Transformer-

  • Taniguchi, Katsunori;Shimomori, Wataru;Lee, Hyun-Woo
    • 대한전기학회:학술대회논문집
    • /
    • 대한전기학회 2005년도 제36회 하계학술대회 논문집 B
    • /
    • pp.1383-1386
    • /
    • 2005
  • Non-isolated OSAKA Converter, which removes a three-phase transformer, is described in this paper. The converter switches once in every half cycle of an AC commercial power source. Therefore, it can solve many problems caused by the high frequency operation. The proposed converter achieves the soft-switching operation and the EMI noise can be reduced. In this circuit, the resonant capacitor, which is used for the soft-switching operation, is utilized for the improvement of an input current waveform. To achieve low cost and compact structure, non-isolated OSAKA converter removes a three-phase transformer of the OSAKA converter. By removing the three-phase transformer, three phase currents occur the interferences each other. To avoid the interference, a new switching method for non-isolated OSAKA converter is preposed. The converter can be constructed by the low-speed large power devices. The converter generates the low distorted input current waveforms with high power factor.

  • PDF

Ductile crack initiation evaluation in stiffened steel bridge piers under cyclic loading

  • Fujie, Wataru;Taguchi, Miki;Kang, Lan;Ge, Hanbin;Xu, Bin
    • Steel and Composite Structures
    • /
    • 제36권4호
    • /
    • pp.463-480
    • /
    • 2020
  • Although detailed shell analysis is suitable to predict the ductile crack initiation life of steel members, such detailed method adds time expense and complexity. In order to simply predict the ductile crack initiation life of stiffened steel bridge piers, a total of 33 cases are simulated to carry out the parametric analyses. In the analysis, the effects of the width-to-thickness ratio, slenderness ratio, plate thickness and so on are considered. Both shell analyses and beam analyses about these 33 cases are conducted. The plastic strain and damage index obtained from shell and beam analyses are compared. The modified factor βs is determined based on the predicted results obtained from both shell and beam analyses in order to simulate the strain concentration at the base corner of the steel bridge piers. Finally, three experimental results are employed to verify the validity of the proposed method in this study.

Method of Determining Future Facility Location with Maintaining Present Accessibility

  • Takahagi, Wataru;Sumitani, Yasushi;Takahashi, Hirotaka;Omae, Yuto;Sakai, Kazuki
    • Industrial Engineering and Management Systems
    • /
    • 제15권3호
    • /
    • pp.197-205
    • /
    • 2016
  • The public services closely related to the daily lives of the Japanese people, such as firefighting, police or primary school education, are largely financed by the local governments. As the population as a whole in Japan declines, the population in local regions are forecasted to experience particularly rapid decline in the future, and it is inevitable to reduce the cost of public services provided by the local governments to keep their financial basis sustainable. In order to provide public services to the people properly and fairly, the local governments own and utilize their public facilities, such as fire stations, police stations or primary schools. On the other hand, we have to secure the accessibility, which is the condition of accessing a facility easily in a whole local city including the high population density area and low population density area. In this paper, we propose a method of determining the number of future facilities and its facility locations in which we maintain the present accessibility. In our proposed method, we determine them comparing the accessibility measurement calculated by facility location model using the present and future population. We adopted k-centdian model as the facility location model, which can secure the accessibility in a whole local city determining the weights of both areas. We applied our proposed method to fire station in Iwaki city, Japan. The results suggested that 7 facilities would be reduced in 2064, after 50 years from 2014. Additionally, we confirmed that the future facility location had secured accessibility in both high and low population density area.

도막의 기계적 성질과 포수방법이 단청의 내후성에 미치는 영향 (Influence of Mechanical Properties of Painting Layers and Priming Methods to Weathering Resistance of Danchung)

  • 오준석;카와노베 와타루
    • 보존과학회지
    • /
    • 제17권
    • /
    • pp.19-32
    • /
    • 2005
  • 전통목조건축물의 단청에서 발생하는 도막의 박리현상을 개선시키기 위해, 목재의 친수성으로 인해 목재와 도막간의 팽윤수축률의 차이에 의해 발생되는 응력이 도막의 내후성에 미치는 영향을, 도막의 기계적 성질(인장성질과 응력완화)과 교착제(아교, 아크릴에멀젼(Primal AC-3444), 아크릴수지 (Paraloid B-72))에 의한 포수방법으로부터 평가하였다. 아크릴에멀젼 도막은, 아크릴에멀젼의 유리전이온도가 상온 이하$(7^{\circ}C)$로써 외력에 대한 응력완화가 큰 성질을 가지고 있기 때문에, 열화촉진실험과 옥외폭로실험에서 박리가 발생하지 않았으며, 다른 교착제를 사용한 도막에 비해 내후성이 가장 뛰어났다. 또 목재에 교착제를 저농도에서 고농도까지 중복칠하는 포수방법이 다른 포수방법들보다 도막의 내후성을 향상시키는 효과가 있었다.

  • PDF