• Title/Summary/Keyword: Virus distribution

Search Result 248, Processing Time 0.026 seconds

A note on the distance distribution paradigm for Mosaab-metric to process segmented genomes of influenza virus

  • Daoud, Mosaab
    • Genomics & Informatics
    • /
    • v.18 no.1
    • /
    • pp.7.1-7.7
    • /
    • 2020
  • In this paper, we present few technical notes about the distance distribution paradigm for Mosaab-metric using 1, 2, and 3 grams feature extraction techniques to analyze composite data points in high dimensional feature spaces. This technical analysis will help the specialist in bioinformatics and biotechnology to deeply explore the biodiversity of influenza virus genome as a composite data point. Various technical examples are presented in this paper, in addition, the integrated statistical learning pipeline to process segmented genomes of influenza virus is illustrated as sequential-parallel computational pipeline.

Distribution and incidence of potato virus Y in burley tobacco, (Burley종 잎담배 산지의 PVY 발생상황)

  • 박은경
    • Journal of the Korean Society of Tobacco Science
    • /
    • v.5 no.1
    • /
    • pp.19-23
    • /
    • 1983
  • Potato virus Y (PVY) distribution, areas where the virus occurred, and incidence, Percentage of plants infected, on burley tobacco in Korea was surveyed in 1982. Most of the fields Investigated were infected with PVY. The virus incidence was 12.5%. District)union and incidence generally were sporadic, but Onyang, Hongseung and Iksan area virus incidence was higher than that of other areas. For strain identification, approximately 95% was nonnecrotic (PVY-VB) and 5olo necrotic strain (PVY-VN) .

  • PDF

A Study on simulation analysis of the microbe transport of air-born virus in hospital for microbiological safety (미생물 안전을 위한 병원건물의 환기설계에 따른 공기 감염균 확산에 관한 시뮬레이션 연구)

  • Choi, Sang-Gon
    • Journal of the Korea Safety Management & Science
    • /
    • v.19 no.4
    • /
    • pp.115-123
    • /
    • 2017
  • Recently there is a growing interest in the airborne spread of virus. In particular, there is growing interest in secondary infection through the air in the hospital. The distribution of air-born virus depends on ventilation system installed in a hospital. In this study, simulations were carried out to predict the move of air-born virus by ventilation system at hospital. Simulation results showed that pressure distribution was -372.05Pa ~ -3.45 Pa at 1st floor incase of only used mechanical exhaust at bathroom, shower stall, storage, kitchen etc.. if ventilation switch from used mechanical exhaust to mechanical exhaust & mechanical supply. Simulation results showed that pressure distribution was -336.44Pa at stair hall < -0.2Pa at bathroom < mean 1.19Pa at other room. So simulation results showed that using all of the mechanical supply and mechanical exhaust was more effective then the mechanical exhaust for maintain the pressure distribution in hospital. It was also showed that when using the mechanical supply and mechanical exhaust more effectively prevention of air born virus diffusion.

Occurrence and Distribution of Viruses Infecting Pepper in Korea

  • Choi, Gug-Seoun;Kim, Jae-Hyun;Lee, Dong-Hyuk;Kim, Jeong-Soo;Ryu, Ki-Hyun
    • The Plant Pathology Journal
    • /
    • v.21 no.3
    • /
    • pp.258-261
    • /
    • 2005
  • We conducted a survey on pepper virus diseases in 31 regions in Korea from November 2001 to December 2004. Using electron microscopy, test plant reaction, rapid immuno-filter paper assay (RIPA), reverse transcription-polymerase chain reaction (RT-PCR) and/or analysis of viral nucleotide sequences, we found a number of viruses from 1,056 samples that we collected. These included Cucumber mosaic virus (CMV), Pepper mottle virus (PepMoV), Pepper mild mottle virus (PMMoV), Broad bean wilt virus 2 (BBWV2), Tobacco mild green mosaic virus (TMGMV), and Tomato spotted wilt virus (TSWV). Of the samples analyzed, $343(32.5\%)$ were infected with CMV, $209(19.8\%)$ with PepMoV, $141(13.4\%)$ with PMMoV, $12(1.1\%)$ with BBWV2, $40(3.8\%)$ with TMGMV, $5(0.5\%)$ with TSWV, $153(14.5\%)$ with CMV and PepMoV, $54 (5.1\%)$ with CMV and PMMoV, $31(2.9\%)$ with PepMoV and PMMoV, $3(0.3\%)$ with CMV and BBWV2, $1(0.1\%)$ with CMV, PepMoV and BBWV2, $8(0.8\%)$ with CMV, PepMoV and PMMoV, and $30 (2.8\%)$ samples were infected with viruses which were not identified. CMV was the most predominant virus in all inspected fields and the number of the samples infected with PMMoV was relatively low as compared PepMoV infection level in pepper. TMGMV was only found in the southern part of Korea, while TSWV was isolated in Anyang and Yesan. However, we did not encounter in this survey the Alfalfa mosaic virus (AMV), Potato virus Y (PVY), Tobacco mosaic virus (TMV), and Pepper vein chlorosis virus (PVCV).

Garlic Mite-borne Virus Isolated from Cultivated Garlic in Korea (한국산 마늘에서 분리된 응애전파성 바이러스)

  • 구봉진;장무웅;최양도
    • Korean Journal Plant Pathology
    • /
    • v.14 no.2
    • /
    • pp.136-144
    • /
    • 1998
  • Many cloves of native cultivated garlics in Korea were found to be infested by mites when observed with stereo-microscope. The mite was identified by light and scanning electron microscopic observation as Aceria tulipae. Surveying viruses from the vegetatively propagated garlic, highly flexuous, filamentous particles (700∼800 nm) were detected in Aceria tulipae, local lesions of Chenopodium murale after sap transmissions, mosaic garlic leaves inoculated with mite-borne virus by transmission of Aceria tulipae and naturally infected garlic leaves. The mite-borne virus isolated did not react with antisera of aphid-borne potyviruses (LYSV-G, LYSV-L, WoYSV) or carlavirus (GLV), but reacted with antisera of garlic mite-borne viruses (GV-C, GMbMV). In ultratin sections of mite-borne virus infected garlic tissues, aggregates of virus particles and membrane proliferations were found in the parenchyma cells, but cytoplasmic cylindrical inclusions were not observed. Heavily mite-infested plants showed streaking and malformation due to mite feeding. The mite-borne virus was identified as garlic mite-borne mosaic virus (GMbMV), the mite-borne genus Rymovirus of the Potyviridae by mite transmission, morphology of virus particles, serological relationships, host range, distribution pattern of virus particles and inclusion bodies in the infected cells. The results demonstrate that mite-borne virus is one of the major viruses infecting native cultivated garlic plants showing mosaic or streak symptoms in Korea.

  • PDF

Histopathological observations and investigations of antigen distribution on the lesions Induced by canine distemper virus in dogs (개 디스템퍼바이러스에 감염된 장기병변의 병리조직학적 관찰 및 조직내 항원분포 조사에 관한 연구)

  • Seong, Seung-kyoo;Seo, Il-bok
    • Korean Journal of Veterinary Research
    • /
    • v.36 no.2
    • /
    • pp.405-415
    • /
    • 1996
  • This study was carried out to investigate the distribution of inclusion bodies in the tissues as well as to observe the general histopathological lesions of dogs infected with canine distemper. And also, the reliability of diagnostic values of inclusion bodies and the distribution of viral antigen in tissues were inspected by immunohistochemistry with monoclonal antibody. The results obtained were as follows; 1. Pneumonia observed in dogs infected with canine distemper virus was classified into interstitial, broncho-, and broncho-interstitial pneumonia histopathologically. Each occurring ratio was 35, 45 and 20%. 2. Histopathological classification of the canine distemper encephalitis was 20% in acute, 60% in subacute, and 20% in chronic encephalitis, respectively. 3. The organs in which inclusion bodies were predominantly distributed were stomach(82.6%), cerebellum(62.9%), lung(62.1%), cerebrum(50.0%), urinary bladder (46.1%), kidney(36.0%) and pancreas(25.0%). Intracytoplasmic inclusion bodies were mainly observed in the organs except the brain. 4. Canine distemper virus antigens were detected in the numerous tissues as well as in the inclusion bodies observed in the various organs. Antigen detection ratios in the lung, cerebellum and cerebrum were 68.9, 70.4 and 52.2%, respectively. These ratios were somewhat higher than those of inclusion bodies observed in the organs. 5. Canine distemper virus was mainly distributed in astrocytes and ependymal cells in the brain. These results suggested that the histopathologic diagnosis of canine distemper was reliable, and the spread of canine distemper virus in the brain was related with cerebrospinal fluid pathway.

  • PDF

Detection of Airborne Respiratory Viruses in Residential Environments (주거환경 공기 중 호흡기 바이러스의 검출)

  • Park, Keun-Tae;Moon, Kyong-Whan;Kim, Hyung-Tae;Park, Chan-Jung;Jeong, Ho-Chul;Lim, Young-Hee
    • Journal of Environmental Health Sciences
    • /
    • v.37 no.4
    • /
    • pp.306-314
    • /
    • 2011
  • Objectives: Respiratory virus infections are the most common disease among all ages in all parts of the world and occur through airborne transmission. The purpose of this study was to detect and quantitate human respiratory viruses in residential environments. Methods: Air samples were collected from the residential space of apartments in the Seoul/Gyeonggi-do area. The samples were collected from indoor and outdoor air. Among respiratory viruses, influenza A virus, influenza B virus, parainfluenza virus, metapneumovirus, respiratory syncytial virus, and adenovirus were investigated by multiplex polymerase chain reaction. Among the virus-positive samples, we performed adenovirus quantification by real-time polymerase chain reaction. Results: Virus detection rates were 44.0%, 3.8%, 3.4%, and 17.3% in spring, summer, autumn, and winter, respectively. The virus detection rate was higher in winter and spring than in summer and autumn. Adenovirus was most commonly detected, followed by influenza A virus and parainfluenza virus. Virus distribution was not significantly different between indoor and outdoor environments. Conclusions: Although virus concentrations were not high in residential environments, residents in houses with detected viruses may have an increased risk of exposure to airborne respiratory viruses, especially in winter and spring.

Occurence of Viruses in Lilies (Lilium spp.) in Highland Areas and Their Detection by One-step RT-PCR (고랭지 나리의 바이러스 발생과 RT-PCR에 의한 검정)

  • 김수정;함영일;신관용;류승열;유동림;정효원;최장경
    • Research in Plant Disease
    • /
    • v.7 no.2
    • /
    • pp.80-85
    • /
    • 2001
  • This study was carried out to examine tne incidences of virus diseases in lily plants cultivated in highland areas, and to develop an effective detection method. Viral symptoms on lilies in the highland areas were differentiated into mosaic, crinkle, mottle, stripe and line pattern. The distribution of symptoms on infected plants was 43.8% of mosaic, 29.2% of crinkle, and 10.9% of mottle symptoms. Six viruses such as Lily symptomless vires(LSV), Cucumber mosaic virus (CMV), Lily mottle virus (LMoV), Lily virus X (LVX, Potexvirus), Tabacco mosaic virus (TMV,Tobamovirus), and Tabacco rattle virus (TRV,Tobravirus) were detected from the infected lilies. Infection rate of Lilium oriental (cvs. Casablanca and Marcopolo) was 2~4 times higher than that of L. asiatic (cvs. Solemio and Prato). Virus detection on lilies by one-step RT-PCR (by using reverse transcription and polymerase chain reaction simultaneously) was more rapid rapid and reliable than by the conventional RT-PCR method.

  • PDF

An Immunohistochemical Study of Viral Antigen in Aborted Fetuses Naturally Infected by Bovine Viral Diarrhea Virus

  • Shin, Tae-Kyun
    • Korean Journal of Veterinary Pathology
    • /
    • v.3 no.2
    • /
    • pp.73-76
    • /
    • 1999
  • The tissue distribution and cellular localization of viral antigen in the brain of aborted fetus with bovine viral diarrhea virus(BVDV) infection was studied; BVDV antigens was detected in spleen, kidney, lung, eyelid as well as brain. In the brain, the virus was recognized in neurons and non-neuronal cells in the cerebellum and cerebrum. Many cells in the superficial layer and occasional Purkinje cells had BVDV antigens. As well, BVDV was also found in the perivascular cells, vascular endothelial cells and smooth muscle cells in the vessels and neuroglial cells in the white matter. This finding suggests that BVD virus favors infect progenitor cells in the brain, notably in the superficial layer of cerebellum, and damage normal development of cerebellum, which leads to cerebellar hypoplasia.

  • PDF

A transmission distribution estimation for real time Ebola virus disease epidemic model (실시간 에볼라 바이러스 전염병 모형의 전염확률분포추정)

  • Choi, Ilsu;Rhee, Sung-Suk
    • Journal of the Korean Data and Information Science Society
    • /
    • v.26 no.1
    • /
    • pp.161-168
    • /
    • 2015
  • The epidemic is seemed to be extremely difficult for accurate predictions. The new models have been suggested that show quite different results. The basic reproductive number of epidemic for consequent time intervals are estimated based on stochastic processes. In this paper, we proposed a transmission distribution estimation for Ebola virus disease epidemic model. This estimation can be easier to obtain in real time which is useful for informing an appropriate public health response to the outbreak. Finally, we implement our proposed method with data from Guinea Ebola disease outbreak.