• The Korean Journal of Soil Zoology
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• v.6 no.1_2
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• pp.37-44
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• 2001

Scarabaeids and white grubs were investigated at Halla arboretum and nursery in Jeju province in 1999 and 2001. Scarabaeid pests were surveyed from 14 tree species of 12 families at Halla arboretum in Jeju in March, 1999 and from 55 species of 27 families in March and September, 2001 and from Taxus cuspidata at nursery in Seoguipo in March, 1999 and 18 tree species of 9 families at the same nursery in March and September, 2001. Six species of white grubs and scarabaeids were collected from Halla arboretum. At Halla arboretum, Holotrichia niponensis was collected from 28 tree species of 21 families, H. diomphalia from 27 tree species of 20 families, and an unidentified white grub from 27 tree species of 19 families. Maladera orientalis was collected from 4 tree species of 4 families and Aphodius sp. and Adoretus tenuimaculatus from Punica granatum and Carpinus sieboldiana. At Halla nursery in Seoguipo, H. niponensis were collected from 9 tree species of 6 families and H. diomphalia from 10 tree species of 6 families. White grub of Minela testaceopes was collected from Ternsstraemia japonica. H. niponensis, H. diomphalia and an unidentified white grub were dominant species out of collected white grubs and scarabaeids and these were collected from Cinamomum camphrora. H. niponensis was the most serious pest on T. cuspidata.

• Journal of Species Research
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• v.13 no.2
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• pp.159-177
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• 2024

A faunal study on the marine amphipods at eight sites of the continental shelf region in the Southern Sea, Korea was conducted from 16-17 August 2022. In this study, 26 amphipod species in 19 genera and 14 families were found. Among these 14 families, the family Ampeliscidae with six species showed the highest abundance, followed by the family Caprellidae with five species. Amphipods were collected using conical nets, MOCNESS nets, SM grabs, and trawls. When using the SM Grab for collecting benthic sediment, 15 out of a total of 26 amphipod species were surveyed, indicating the highest diversity of amphipod species. Out of the total 26 species, four identified species (Ampelisca pygmaea Schellenberg, 1938; Byblis longiflagelis Ren, 1998; Caprella iniquilibra Mayer, 1903; Primno latreillei Stebbing, 1888) and five unidentified species(Themisto sp., Liljeborgia sp., Dulichiella sp., Cranocephalus sp., Primno sp.) are newly recorded in Korean fauna. These newly recorded species are fully illustrated and compared with related species. We provide a list amphipod fauna in Southern Sea of Korea including figures and tables.

• Proceedings of the Korean Society of Plant Pathology Conference
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• 2003.10a
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• pp.115.1-115
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• 2003

Post-harvest decay, caused by Penicillium spp. is a serious problem of fruits worldwide. Morphological characteristics and molecular markers were used to characterize 22 Penicillium isolates from apples, 18 isolates from pears, 60 from oranges and 18 from grapes and 23reference isolates representing related Penicillium spp. to assess their diversity and resolve their taxonomy. Based on morphological and physiological characteristics, the isolates were grouped as identical or very similar to P. digitatum, P. italicum, P. ulaiense or very similar to P. crustosum, P. expansum, P. solitum and unidentified Penicillium spp. Based on sequence comparisons of ITS region, variable site were presented within and among the species, but there variation were not correlated with the species. Cluster analyses of AP-PCR fragment patterns using UP and L45 primer and the -tubulin gene sequence, the Penicillium species were segregated into distinct groups. Particularly. the -tubulin partial sequence data provided support for species concepts based on morphological and physiological characteristics.

• Environmental Analysis Health and Toxicology
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• v.11 no.1_2
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• pp.49-57
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• 1996

The production of reactive oxygen species on addition of hexavalent chromium (potassium dichromate, $K_2Cr_2O_7$ ) to lung cells in culture was studied using flow cytometer analysis. A Coulter Epics Profile flow cytometer was used to detect the formation of reactive oxygen species after $K_2Cr_2O_7$ was added to A549 cells grown to confluence. The cells were loaded with the dye, 2',7'-dichlorofluorescein diacetate, after which cellular esterases removed the acetate groups and the dye was trapped intracellularly. Reactive oxygen species oxidized the dye, with resultant fluorescence. Increased doses of Cr(VI) caused increasing fluorescence (10-fold higher than background at 200 gM). Addition of Cr(III) compounds, as the picolinate or chloride, caused no increased fluorescence. Electron paramagnetic resonance (EPR) spectroscopic studies indicated that three (as yet unidentified) spectral "signals" of the free radical type were formed on addition of 20, 50, 100 and 200 gM Cr(VI) to the A549 cells in suspension. Two other EPR 'signals" with the characteristics of Cr(V) entities were seen at field values lower than the standard free radical value. radical value.

• Journal of Species Research
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• v.11 no.3
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• pp.162-168
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• 2022

Compared to marine dinoflagellates, freshwater species are rarely recorded in Korea. In the present study, we isolated a freshwater dinoflagellate, Palatinus, from the Paldang Reservoir, Korea, in December 2021. The overall cell shape was ovoid, and the cell size was 34.3 ㎛ in length (25.8-39.5 ㎛) and 28.4 ㎛ in width (21.5-34 ㎛). An eyespot was usually observed near the sulcal region. The Kofoidian plate formula of the species was determined to be 4', 2a, 7", 6c, 5s, 5''', and 2''''. Apical pore complex was not observed. However, variations in the cingular plate caused by the fusion of 3C and 4C were observed. Analyses of 28S rDNA sequences revealed that the unidentified species is 100% similar to Palatinus apiculatus, and clustered together in the same lineage in the phylogenetic tree (100% bootstrap value). Our findings confirmed that the isolated dinoflagellate is Palatinus apiculatus, which was discovered for the first time in Korean freshwaters.

• ALGAE
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• v.28 no.4
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• pp.307-330
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• 2013

The genus Cryptomonas is easily recognized by having two flagella, green brownish color, and a swaying behavior. They have relatively simple morphology, and limited diagnostic characters, which present a major difficulty in differentiating between species of the genus. To understand species delineation and phylogenetic relationships among Cryptomonas species, the nuclear-encoded internal transcribed spacer 2 (ITS2), partial large subunit (LSU) and small subunit ribosomal DNA (rDNA), and chloroplast-encoded psbA and LSU rDNA sequences were determined and used for phylogenetic analyses, using Bayesian and maximum likelihood methods. In addition, nuclear-encoded ITS2 sequences were predicted to secondary structures, and were used to determine nine species and four unidentified species from 47 strains. Sequences of helix I, II, and IIIb in ITS2 secondary structure were very useful for the identification of Cryptomonas species. However, the helix IV was the most variable region across species in alignment. The phylogenetic tree showed that fourteen species were monophyletic. However, some strains of C. obovata had chloroplasts with pyrenoid while others were without pyrenoid, which used as a key character in few species. Therefore, classification systems depending solely on morphological characters are inadequate, and require the use of molecular data.

• Mycobiology
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• v.50 no.4
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• pp.231-237
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• 2022

Penicillium species have been actively studied in various fields, and many new and unrecorded species continue to be reported in Korea. Moreover, unidentified and misidentified Korean Penicillium species still exist in GenBank. Therefore, it is necessary to revise the Korean Penicillium inventory based on accurate identification. We collected Korean Penicillium nucleotide sequence records from GenBank using the newly developed software, GenMine, and re-identified Korean Penicillium based on the maximum likelihood trees. A total of 1681 Korean Penicillium GenBank nucleotide sequence records were collected from GenBank. In these records, 1208 strains with four major genes (Internal Transcribed Spacer rDNA region, b-tubulin, Calmodulin and RNA polymerase II) were selected for Penicillium reidentification. Among 1208 strains, 927 were identified, 82 were identified as other genera, the rest remained undetermined due to low phylogenetic resolution. Identified strains consisted of 206 Penicillium species, including 156 recorded species and 50 new species candidates. However, 37 species recorded in the national list of species in Korea were not found in GenBank. Further studies on the presence or absence of these species are required through literature investigation, additional sampling, and sequencing. Our study can be the basis for updating the Korean Penicillium inventory.

• Korean Journal of Environmental Biology
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• v.17 no.1
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• pp.71-77
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• 1999

Phytoplankton communities were investigated 13 times during the period from November, 1995 to December, 1996 in the coastal area of Kori. A total of 162 taxa (including unidentified species) were observed； 120 diatoms, 3 silicoflagellates, 34 dinoflagellates, 2 euglenoids, 1 chlorophyte and 2 unidentified microflagellates. A diatom species, Skeletonema costatum (Greville) Clove dominated all the year round. The standing stocks of phytoplankton ranged from 94 cells/ml in August to 1059 cells/ml in July. The peaks of standing stocks occurred in February and July. The effects of thermal effluent to the phytoplankton communities changed seasonally and might affect increasing the standing stocks where about 1 ∼ 3 km from the discharge of Kori Nuclear Power Plant in autumn and winter. But the effects of thermal effluent must be negative in summer.

• Journal of Microbiology
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• v.44 no.5
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• pp.572-576
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• 2006

To obtain primary idea on oral bacterium species that are generally present in periodotally healthy Koreans, the oral bacterial flora in the saliva of four periodontally healthy Koreans at different ages (5, 32, 35, 65) was investigated in this study. For this investigation, 16S rRNA gene clone libraries were generated from the saliva of the four healthy Koreans, and 50 clones were randomly selected from each saliva clone library and sequenced. Totally, 37 different kinds of bacterial 16S rRNA gene sequences were identified based on sequence homology search through GenBank database. The 37 kinds of saliva clone sequences were classified to 14 genera and 2 uncultured and 1 unidentified bacteria. Among the 14 identified genera, Streptococcus, Prevotella, and Veillollella were common genera, and Streptococcus was dominant genus that accounted for 7 different species. Among the seven Streptococcus species, S. salivarius appeared as the most common species. More numbers of species belonging to the genera Streptococcus and Prevotella was present in saliva from ages 32 and 35. While saliva from ages 5 and 65 showed more numbers of species belonging to the genera Rothia, including potential pathogenic species. Overall, saliva of a young child and a senior showed higher bacterial diversity than that of young adults.

• Journal of Microbiology and Biotechnology
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• v.17 no.1
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• pp.168-175
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• 2007

We report here on the cultivation of numerous novel bacterial species from a eutrophic freshwater pond. A total of 60 strains, 15 strains per each culture medium, were obtained from the surface of a eutrophic freshwater pond by employing a conventional dilution-plating method with four different kinds of culture media, including R2A, 1/10R2A, PCA, and 1/10PCA. Among the 60 strains isolated, 27 strains showed less than 97% 16S rRNA gene sequence similarities to validly published species, and thus they are considered to comprise 19 novel species. Of the 27 strains assigned to the novel species, the majority of the strains (20 strains) were affiliated with the Alphaproteobacteria and Betaproteobacteria. The remaining 7 strains were affiliated with the Gammaproteobacteria, Firmicutes, Actinobacteria, and Deinococci. Because we have isolated 19 novel species from a usual freshwater pond using a conventional culturing technique, our results suggest that an unexplored ecosystem, even if it looks like a common ecosystem found elsewhere, harbors diverse unidentified microbes, which will be definitely further characterized.