• Title/Summary/Keyword: Tropical climate

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RNA-seq profiling of skin in temperate and tropical cattle

  • Morenikeji, Olanrewaju B.;Ajayi, Oyeyemi O.;Peters, Sunday O.;Mujibi, Fidalis D.;De Donato, Marcos;Thomas, Bolaji N.;Imumorin, Ikhide G.
    • Journal of Animal Science and Technology
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    • v.62 no.2
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    • pp.141-158
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    • 2020
  • Skin is a major thermoregulatory organ in the body controlling homeothermy, a critical function for climate adaptation. We compared genes expressed between tropical- and temperate-adapted cattle to better understand genes involved in climate adaptation and hence thermoregulation. We profiled the skin of representative tropical and temperate cattle using RNA-seq. A total of 214,754,759 reads were generated and assembled into 72,993,478 reads and were mapped to unique regions in the bovine genome. Gene coverage of unique regions of the reference genome showed that of 24,616 genes, only 13,130 genes (53.34%) displayed more than one count per million reads for at least two libraries and were considered suitable for downstream analyses. Our results revealed that of 255 genes expressed differentially, 98 genes were upregulated in tropically-adapted White Fulani (WF; Bos indicus) and 157 genes were down regulated in WF compared to Angus, AG (Bos taurus). Fifteen pathways were identified from the differential gene sets through gene ontology and pathway analyses. These include the significantly enriched melanin metabolic process, proteinaceous extracellular matrix, inflammatory response, defense response, calcium ion binding and response to wounding. Quantitative PCR was used to validate six representative genes which are associated with skin thermoregulation and epithelia dysfunction (mean correlation 0.92; p < 0.001). Our results contribute to identifying genes and understanding molecular mechanisms of skin thermoregulation that may influence strategic genomic selection in cattle to withstand climate adaptation, microbial invasion and mechanical damage.

기후적 질서로 본 오대산 선식물상

  • 정영호
    • Journal of Plant Biology
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    • v.4 no.2
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    • pp.33-40
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    • 1961
  • The moss flora and it's geoecological study were made on Mt. Odae which is situated in the easterm part(37$^{\circ}$43'N. Lat., 128$^{\circ}$30' E. Long) of Korea. The total number ofmosses collected on Mt. Odae in the autumn of 1960 is 50 species, 1 varieties and 1 subspecies, belonging to 23 families. For climate index, Warmth index and Humidity index were calculaterd on Mt. Odae. From the result, it was known that the climate of Mt. Odae is Humid temperate climate and that it's vegetation zone is Deciduous broad-leaf forest zone. Moss Quotient of this mountain is 1.21 and it indicates that the plant climate of Mt. Odae is Hemicryptophytic climate. The moss flora of this mountain was discussed from the pnytogeographical point of view. The flora consists of the following elements: Holarctic element : 20 species (38.5%) North Pacific element: 1 (1.9%) Cosmopolian element: 6 (11.6%) Tropical element: 1 (1.9%) East Asiatic element: 12 (23.05%) Korean-Japan element: 12 (23.05%) Coefficient of closeness was also calculated between the moss flora of Mt. Odae and that of Mt. Sulak and Mt. Kwanak. It was known, therefore, that the flora relation between Mt. Odae and the Mt. Sulak was closer than that between Mt. Odae and Mt. Kwanak.

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Changes in the Characteristics of Wintertime Climatology Simulation for METRI AGCM Using the Improved Radiation Parameterization (METRI AGCM의 복사 모수화 개선에 따른 겨울철 기후모의의 특징적 변화)

  • Lim, Han-Cheol;Byun, Young-Hwa;Park, Suhee;Kwon, Won-Tae
    • Atmosphere
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    • v.19 no.2
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    • pp.127-143
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    • 2009
  • This study investigates characteristics of wintertime simulation conducted by METRI AGCM utilizing new radiation parameterization scheme. New radiation scheme is based on the method of Chou et al., and is utilized in the METRI AGCM recently. In order to analyze characteristics of seasonal simulation in boreal winter, hindcast dataset from 1979 to 2005 is produced in two experiments - control run (CTRL) and new model's run (RADI). Also, changes in performance skill and predictability due to implementation of new radiation scheme are examined. In the wintertime simulation, the RADI experiment tends to reduce warm bias in the upper troposphere probably due to intensification of longwave radiative cooling over the whole troposphere. The radiative cooling effect is related to weakening of longitudinal temperature gradient, leading to weaker tropospheric jet in the upper troposphere. In addition, changes in vertical thermodynamic structure have an influence on reduction of tropical precipitation. Moreover, the RADI case is less sensitive to variation of tropical sea surface temperature than the CTRL case, even though the RADI case simulates the mean climate pattern well. It implies that the RADI run does not have significant improvement in seasonal prediction point of view.

Regional Sea Level Variability in the Pacific during the Altimetry Era Using Ensemble Empirical Mode Decomposition Method (앙상블 경험적 모드 분해법을 사용한 태평양의 지역별 해수면 변화 분석)

  • Cha, Sang-Chul;Moon, Jae-Hong
    • Ocean and Polar Research
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    • v.41 no.3
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    • pp.121-133
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    • 2019
  • Natural variability associated with a variety of large-scale climate modes causes regional differences in sea level rise (SLR), which is particularly remarkable in the Pacific Ocean. Because the superposition of the natural variability and the background anthropogenic trend in sea level can potentially threaten to inundate low-lying and heavily populated coastal regions, it is important to quantify sea level variability associated with internal climate variability and understand their interaction when projecting future SLR impacts. This study seeks to identify the dominant modes of sea level variability in the tropical Pacific and quantify how these modes contribute to regional sea level changes, particularly on the two strong El $Ni{\tilde{n}}o$ events that occurred in the winter of 1997/1998 and 2015/2016. To do so, an adaptive data analysis approach, Ensemble Empirical Mode Decomposition (EEMD), was undertaken with regard to two datasets of altimetry-based and in situ-based steric sea levels. Using this EEMD analysis, we identified distinct internal modes associated with El $Ni{\tilde{n}}o$-Southern Oscillation (ENSO) varying from 1.5 to 7 years and low-frequency variability with a period of ~12 years that were clearly distinct from the secular trend. The ENSO-scale frequencies strongly impact on an east-west dipole of sea levels across the tropical Pacific, while the low-frequency (i.e., decadal) mode is predominant in the North Pacific with a horseshoe shape connecting tropical and extratropical sea levels. Of particular interest is that the low-frequency mode resulted in different responses in regional SLR to ENSO events. The low-frequency mode contributed to a sharp increase (decrease) of sea level in the eastern (western) tropical Pacific in the 2015/2016 El $Ni{\tilde{n}}o$ but made a negative contribution to the sea level signals in the 1997/1998 El $Ni{\tilde{n}}o$. This indicates that the SLR signals of the ENSO can be amplified or depressed at times of transition in the low-frequency mode in the tropical Pacific.

Analysis on the Variability of Korean Summer Rainfall Associated with the Tropical Low-frequency Oscillation (적도 저주파 진동과 관련된 한반도 여름철 강수의 변동성 연구)

  • Moon, Ja-Yeon;Choi, Youngeun;Park, Changyong
    • Journal of the Korean Geographical Society
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    • v.48 no.2
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    • pp.184-203
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    • 2013
  • This study analyzes the variability of Korean summer rainfall associated with the tropical low-frequency oscillation using long-term observation data. From the EOF analysis, the first mode showed opposite phase between the South and the North Korea with the regime shift in rainfall variability since the mid-1990s. The summer precipitation over South Korea tends to increase in southern part during strong El Ni$\tilde{n}$o where the warm sea surface temperature extends to far eastern tropical Pacific. In weak La Ni$\tilde{n}$a, the increased precipitation directly influences from the western tropical Pacific to the mid-latitude. In June, the rainfall over South Korea is positively correlated with the Indian Summer Monsoon while in July, it is negatively correlated with the Western North Pacific Summer Monsoon. In August, highly negative correlation between the rainfall over South Korea and the Indian Summer Monsoon is found.

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Expression of heat shock protein genes in Simmental cattle exposed to heat stress

  • Luis Felipe Guzman;Guillermo Martinez-Velazquez;Fernando Villasenor-Gonzalez;Vicente Eliezer Vega-Murillo;Jose Antonio Palacios-Franquez;Angel Rios-Utrera;Moises Montano-Bermudez
    • Animal Bioscience
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    • v.36 no.5
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    • pp.704-709
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    • 2023
  • Objective: In tropical, subtropical and arid zones, heat stress is the main cause of productivity reduction in cattle. When climate stressors occur, animals become thermal adapted through differential expression of some genes, including heat shock proteins (HSP) family. The aim of this study was to determine levels of expression of HSP60, HSP70, and HSP90 genes in Simmental cattle raised in tropical environments of Mexico. Methods: In this study, expression of HSP60, HSP70, and HSP90 genes was analyzed in 116 Simmental cattle from three farms with tropical climate located in western Mexico. Animals were sampled twice a day, in the morning and noon. Gene expression was evaluated by quantitative polymerase chain reaction using probes marked with fluorescence. The MIXED procedure of SAS with repeated measures was used for all statistical analysis. Results: HSP60 gene expression differences were found for sex (p = 0.0349). HSP70 gene differences were detected for sampling hour (p = 0.0042), farm (p<0.0001), sex (p = 0.0476), and the interaction sampling hour×farm (p = 0.0002). Gene expression differences for HSP90 were observed for farm (p<0.0001) and year (p = 0.0521). HSP70 gene showed to be a better marker of heat stress than HSP60 and HSP90 genes. Conclusion: Expression of HSP70 gene in Simmental herds of the tropical region of western México was different during early morning and noon, but the expression of the HSP60 and HSP90 genes was similar. Identification of resilient animals to heat stress will be useful in the genetic improvement of the Simmental breed.

Consideration on new research direction in marine environmental sciences in relation to climate change (기후변화에 대비한 환경연구의 방향)

  • Kim, Su-Am
    • Journal of Environmental Policy
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    • v.1 no.1
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    • pp.1-24
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    • 2002
  • Due to the recent increase in greenhouse gases in atmosphere, world climate is rapidly changing and in turn, the earth ecosystem responds upon the climate changes. Comparing the ecosystem in the past, the present shapes of ecosystem is the result of the serious modification. Fishery resources in marine ecosystem, which usually occupy the upper trophic level, are also inevitable from such changes, because they always react to the natural environmental conditions. The northwestern Pacific is the most productive ocean in the world producing about 30% of world catch. From time to time, however, it has been notified that abundance, distribution and species composition of major fish species were altered by climate events. Furthermore, primary productivity of the ocean is not stable under the changing environments, so that carrying capacity of the ocean varies from one climate regime to another. Major climate events such as global warming, atmospheric circulation pattern, climate regime shift in the North Pacific, and El Nino event in the Pacific tropical waters were introduced in relation to fisheries aspects. The current status and future projection of fishery production was investigated, especially in the North Pacific including Korean waters. This new paradigm, ecosystem response to environmental variability, has become the main theme in marine ecology and fishery science, and the GLOBEC-type researches might provide a solution far cause-effect mechanism as well as prediction capability. Ecosystem management principles for multi-species should be adopted for better understanding and management of ecosystem.

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A Review of Technologies to Prolong the Shelf Life of Fresh Tropical Fruits in Southeast Asia

  • Kusumaningrum, Dewi;Lee, Seung-Hyun;Lee, Wang-Hee;Mo, Changyeun;Cho, Byoung-Kwan
    • Journal of Biosystems Engineering
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    • v.40 no.4
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    • pp.345-358
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    • 2015
  • Southeast Asia, a typical tropical region, plays an important role in exporting a variety of fruits worldwide. The market for fresh fruits has been growing consistently, and this is a chance for Southeast Asian countries to increase their national income. However, export of tropical fruits has limitations such as a short shelf life and difficulty in maintaining the quality because of tropical climate conditions and undeveloped postharvest technologies in Southeast Asia. An important objective for developing postharvest technologies is to extend the shelf life of fresh fruits without deterioration in fruit quality. Therefore, it is essential to determine factors that affect the shelf life of fruits. The shelf life of tropical fruits is significantly dependent on the inherent properties of the fruits, extrinsic conditions, postharvest treatment, and microbial contamination. Recently, Southeast Asian countries have supported agricultural research groups for developing new postharvest technologies and minimizing postharvest losses and maintaining export fruit quality so that the total sales of tropical fruit farms can increase. This review introduces how the primary factors for extending the shelf life of tropical fruits can be determined and discusses the development of postharvest technologies for tropical fruits in Southeast Asian countries.

Interaction among the East Asian Summer and Winter Monsoons, the Tropical Western Pacific and ENSO Cycle

  • Huang, Rong-Hui;Lu, Ri-Yu;Chen, Wen;Chen, Ji-Rong
    • Atmosphere
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    • v.13 no.2
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    • pp.47-68
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    • 2003
  • Recent advances in the studies on the interaction between Asian monsoon and ENSO cycle are reviewed in this paper. Through the recent studies, the East Asian summer monsoon circulation system and the East Asian climate system have proposed. Moreover, different responses of the (winter and summer) monsoon circulation and summer rainfall anomalies in East Asia to ENSO cycle during its different stages have been understood further. Recently, the studies on the dynamical effect of East Asian monsoon on the thermal variability of the tropical western Pacific and ENSO cycle have been greatly advanced. These studies demonstrated further that ENSO cycle originates from the tropical western Pacific, and pointed out that the dynamical effect of East Asian winter and summer monsoons on ENSO cycle may be through the atmospheric circulation and zonal wind anomalies over the tropical western Pacific, which can excite the oceanic Kelvin wave and Rossby waves in the equatorial Pacific. Besides, the scientific problems in the interaction between Asian monsoon and ENSO cycle, which should be studied further in the near future, are also pointed out in this paper.

Experimental Throughfall Exclusion Studies on Forest Ecosystems: A Review

  • Park, Seunghyeon;Kim, Ikhyun;Kim, Beomjeong;Choi, Byoungkoo
    • Journal of Forest and Environmental Science
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    • v.35 no.4
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    • pp.213-222
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    • 2019
  • Climate change has been intensifying and affecting forest ecosystems. Over the years, the intensity and frequency of climate change have increased and the effects of climate change have been aggravating due to cumulative greenhouse gases such as CO2, which has resulted in several negative consequences, drought being the main threat among all. Drought affects forest ecosystems directly and indirectly. Insufficient soil moisture, due to drought, may affect the growth of plants and soil respiration (SR), and soil temperature may increase because of desiccated soil. In addition, the mortality rate of plants and soil microorganisms increases. As a result, these effects could reduce forest productivity. Thus, in this article, we have presented various research studies on artificial drought using throughfall exclusion, and we have mainly focused on SR, which is significantly related to forest productivity. The research studies done worldwide were sorted as per the main groups of Köppen-Geiger climate classification and intensively reviewed, especially in tropical climates and temperate climates. We briefly reviewed the properties among the exclusion experiments about the temperate climate, which mostly includes Korean forests. Our review is not a proof of concept, but an assumption for adequate investigation of drought effects in the Korean forest.