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Comparison of Four Different Isolation Media for Staphylococcus aureus (황색포도상구균 분리배지 비교)

  • Oh, Min-Hee;Kang, Seong-Il;Hong, Sang-Phil;Oh, Se-Wook
    • Journal of the Korean Society of Food Science and Nutrition
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    • v.38 no.5
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    • pp.606-611
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    • 2009
  • Performance test was carried out between selective media which are generally used in Staphylococcus aureus isolation from food. Sensitivity, determined according to the appearance of characteristic colonies when 30 different S. aureus strains were tested, resulted as Baird-Parker agar (RPF)> $Petrifilm^{TM}$ Staph Express plate> Baird-Parker agar> Mannitol salt agar. Also, the four different media showed the same selectivity because all tested media did not produce the false positive colonies. Recovery efficiency from the artificially inoculated foodstuff was almost the same for the tested media. Presumptive colonies were collected from the dried fishery product using Mannitol salt agar and collected strains were tested on 4 different selective agar. Almost presumptive strains did not show the false positive colonies except for S. carnosus ssp carnosus. This strain was identified as false positive colonies on Mannitol salt agar, Baird-Parker agar and $Petrifilm^{TM}$ Staph Express plate. But Baird-Parker agar (RPF) did not show the false positive colonies with the same strains. So, it was concluded that the Baird-Parker agar (RPF) has more higher selectivity than other tested media in this experiment.

Genetic Vadation and Systematics of the Sticklebacks (Pisces, Gasterosteidae) in Korea (한국산 큰가시고기와 어류의 지리적 변이 및 계통적 유연관계)

  • 양서영;민미숙
    • The Korean Journal of Zoology
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    • v.33 no.4
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    • pp.499-508
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    • 1990
  • Surveys of elecirophoretic variations in isozymes and proteins encoded by 25 persumtive loci were conducted to estimate the degree of genic variation and to assess species recognition for three species of the Family Gasterosteidae (Pisces) in Korea. The average degree of genic variation of Gasterosteus aculeatus was HD = 0.086, HG = 0.084, and P =36% and it was similar to Pungitius sinensis (HD = 0.080, HG = 0.091, P = 29%). But P.kaibarae was less variable than these species (HD = 0.034; HG = 0.034, P = 13%). The average genetic similarities among the populations in each species of Gasterosteus aculeatus pungitius sinensis and P. kaibarae were S = 0.963, S = 0.953 and S = 0.800 respectively.Yongchon and Kyongiu populations of P. kaibarae were genetically remote from the rest of the conspecific populations (S = 0.690). Chae (1988) also observed morphological differences between them. The value of genetic similariiy coefficients of S = 0.606 between P. sinensis and P. kaibarae is low enough to consider as specific level of genetic difference, but moderate rate of hybridization (44%) between them at a synpatric area of Kangnung indicates that isolating mechanism is incomplete. Therefore it is concluded that P. sinensis and P. kaffarae are semispecitic status. Intergeneric genetic similarities between the genus Gasrerosteus and Pungitius were S = 0.052 and this value is the lowest estimate up to date in freshwater fishes.

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A Study on Frost Occurrence Estimation Model in Main Production Areas of Vegetables (채소 주산지에 대한 서리발생예측 연구)

  • Kim, Yongseok;Hur, Jina;Shim, Kyo-Moon;Kang, Kee-Kyung
    • Journal of the Korean earth science society
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    • v.40 no.6
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    • pp.606-612
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    • 2019
  • In this study, to estimate the occurrence of frost that has a negative effect on th growth of crops, we constructed to the statistical model. We factored such various meteorological elements as the minimum temperature, temperature at 18:00, temperature at 21:00, temperature at 24:00, average wind speed, wind speed at 18:00, wind speed at 21:00, amount of cloud, amount of precipitation within 5 days, amount of precipitation within 3 days, relative humidity, dew point temperature, minimum grass temperature and ground temperature. Among the diverse variables, the several weather factors were selected for frost occurrence estimation model using statistical methods: T-test, Variable importance plot of Random Forest, Multicollinearity test, Akaike Informaiton Criteria, and Wilk's Lambda values. As a result, the selected meteorological factors were the amount of cloud, temperature at 24:00, dew point temperature, wind speed at 21:00. The accuracy of the frost occurrence estimation model using Random Forest was 70.6%. When it applied to the main production areas of vegetables, a estimation accuracy of the model was 65.2 and 78.6%.

Sequence Diversity of Mitochondrial Cytochrome b Gene in Grey Goral Naemorhedus caudatus(Artiodactyla, Bovidae) from Korea (한국의 산양(우제목, 소과)의 미토콘드리아 Cytochrome b 염기서열 다양성)

  • Koh, Hung-Sun;Yang, Byong-Guk;Lee, Bae-Kun;Lee, Jong-Hyong
    • Animal Systematics, Evolution and Diversity
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    • v.18 no.1
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    • pp.13-21
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    • 2002
  • To add genetic information to the conservation efforts on grey coral (Naemorhedus caudatus) in Korea, we investigated the pattern of mitochondrial cytochrome b gene sequence (606 bp) of six specimens from two localities in Korea. The corresponding sequences of N. caudatus in China obtained from GenBank were also used. The nucleotide Tamura-Nei distances between each of four haplotypes of N. caudatus in Korea and the haplotype of N. caudatus in China varied from 0.0650 to 0.0803: N. caudatus revealed high level of sequence diversity in Bovidae. In N. caudatus in Korea, the distances among three haplotypes at Yanggu were 0.0151 to 0.0185, and it suggests that the genetic diversity of Yanggu population was decreased in low level. Moreover, the distances between each of three haplotypes at Yanggu and one haplotype at Samcheok were 0.0343 to 0.0489. It indicates that habitat isolation caused the continuous increase of genetic distance with geographic distance in N. caudatus, and various conservation plans for mitigating the loss of genetic diversity in Korea have to be in immediate action. To clarify the taxonomic status of N. caudatus, the sequence (276 bp) of N. goral available from GenBank were also utilized, and n goral was not distinct from N. caudatus. It suggests that they may be conspecific, but further analyses with additional specimens of two species are necessary.

Molecular Cloning and Nucleotide Sequence Analysis of pyrB Gene Encoding Aspartate Transcarbamylase from Psychrophilic Sporosarcina psychrophilia (저온성균 Sporosarcina psychrophilia로부터 Aspartate Transcarbamylase 유전자의 클로닝 및 염기서열 분석)

  • 성혜리;안원근;김사열
    • Microbiology and Biotechnology Letters
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    • v.30 no.4
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    • pp.312-319
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    • 2002
  • The Sporosarcina psychrophilia pyrB gene, which encodes aspartate transcarbamylase (ATcase), was cloned on Sau3AI restriction endonuclease fragment inserted into pUC19 plasmid vector, S. psychrophilia pyrB gene was expressed in Escherichia coli pyrB mutant for the complementation test. The sequence of 2,606 nucleotides including putative pyrB gene was determined. The region contained one full open reading frame (ORf) and two partial ORFs. The deduced amino acid sequence of the second ORF showed 59% identity with that of Bacillus caldolyticus ATCase. The first and third partial ORFs were closely related to the uracil permease (pyrP) and dihydroorotase (pyrC), respectively. Besides, potential terminator, antiterminator, and anti-antiterminator structures were found in the intergenic region between pyrP and pyrB. These results suggested that S. psychrophilia pyrimidine nucleotide biosynthesis genes are clustered as well as other Bacillus sp. Over-expressed product of pyrB encoding ATCase was purified and analyzed by the SDS-PAGE. The purified PyrB protein turned out to be molecular mass of 27 kDa and showed ATCase activity.

Change in Palliative Performance Scale (PPS) Predicts Survival in Patients with Terminal Cancer

  • Oh, Jee Hye;Lee, Yong Joo;Seo, Min Seok;Yoon, Jo Hi;Kim, Chul Min;Kang, Chung
    • Journal of Hospice and Palliative Care
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    • v.20 no.4
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    • pp.235-241
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    • 2017
  • Purpose: The Palliative Performance Scale (PPS) is a widely used prognostic tool in patients with advanced cancer. This study examines the association between changes in PPS score and survival in patients with advanced cancer. Methods: We identified a cohort of 606 inpatients who died at a Korean university hospital's hospice/palliative care center. For each patient, the PPS score was measured twice according to a standard procedure: 1) upon admission, and 2) three days after admission (D3). "Change on D3" was defined as a difference between initial PPS and PPS on D3. We used a Cox regression modeling approach to explore the association between this score change and survival. Results: The changes in scores were associated with survival. A score change of >30% yielded a hazard ratio for death of 2.66 (95% CI 2.19~3.22), compared to a score change of ${\leq}30%$. PPS of ${\leq}30$ on D3 also independently predicted survival, with a hazard ratio of 1.67 (95% CI 1.38~2.02) compared to PPS of >30. Conclusion: A change of over 30% in PPS appears to predict survival in hospitalized patients with terminal cancer, even after adjustment for confounders. Changes in PPS may be a more sensitive indicator of impending death than a single PPS measured on the day of admission in terminal cancer patients. Further prospective study is needed to examine this important finding in other populations.

Biochemical Characterization of a Protease with Fibrinolytic Activity from Maggots of Protaetia brevitarsis (Protaetia brevitarsis의 maggot로부터 fibrinolytic activity을 가진 protease의 생화학적 특성 연구)

  • Chang, Jeong-Hyun;Jo, Ji-Young;Kim, Yeong-Jin;Lee, Sun-Yi;Cho, Hyo-Jin;You, Sun-Nyoung;Kim, Kwang-Youn;Park, Byoung-Keun;Ahn, Soon-Cheol;Kwon, Heun-Young
    • Journal of Life Science
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    • v.17 no.5 s.85
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    • pp.606-612
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    • 2007
  • Fibrin clots remained in blood vessels can be one of the serious factor caused cardiovascular disease, such as ischemia, infarction and necrosis The development of an antithrombotic and thrombolysis solvent is necessary to prevent and treat these diseases. In this study, the fibirinolytic protease was prepared from the maggots of Protaetia brevitarsis using ammonium sulfate fractionation and desalting column. The optimum pH and temperature for the enzyme activity were pH 9.0 and $50^{\circ}C$, respectively. The enzyme activity was relatively stable at pH 7.0-9.0 and temperature below $60^{\circ}C$. The activity of the enzyme was strongly inhibited by phenylmethanesulfonyl fluoride. And the activity of the enzyme was inhibited by $Ca^{2+}\;and\;Zn^{2+}$, but it was not by $Mg^{2+}\;and\;Fe^{2+}$ ions. In these experimental results, we have speculated that the enzyme derived from maggots of Protaetia hrevitarsis is a serine protease with a strong fibrinolytic activity.

Molecular Docking Study of Aminoacyl-tRNA Synthetases with Ligand Molecules from Four Different Scaffolds

  • Bharatham, Nagakumar;Bharatham, Kavitha;Lee, Yu-No;Kim, Song-Mi;Lazar, Prettina;Baek, A-Young;Park, Chan-In;Eum, Hee-Sung;Ha, Hyun-Joon;Yun, Sae-Young;Lee, Won-Koo;Kim, Sung-Hoon;Lee, Keun-Woo
    • Bulletin of the Korean Chemical Society
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    • v.31 no.3
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    • pp.606-610
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    • 2010
  • Aminoacyl-tRNA synthetases (aaRSs) play vital roles in protein biosynthesis of living organisms and are interesting antibacterial drug targets. In order to find out new inhibitor candidate molecules as antibacterial agent, the binding modes of the candidate molecules were investigated at the active sites of aaRSs by molecular docking study. The docking simulations were performed with 48 compounds from four different scaffolds into the eight different aaRSs. The results show that scaffolds 3 and 4 compounds have consistently better binding capabilities, specifically for HisRS (E. coli) and IleRS (S. aureus). The binding modes of the best compounds with the proteins were well compatible with those of two ligands in crystal structures. Therefore, we expect that the final compounds we present may have reasonable aaRS inhibitory activity.

Contemplative Education as a Content Area of Education: Through the Review of Educational Research in the US (명상의 교육콘텐츠로서의 의미: 교육적 효과에 대한 미국 문헌 분석을 중심으로)

  • Min, Hee Jung
    • The Journal of the Korea Contents Association
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    • v.17 no.9
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    • pp.606-618
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    • 2017
  • As contemplative education has been increasingly incorporated in schools in the US, this study aims to review literature on contemplative education for teachers and students in the US and to explore pedagogical meanings of meditation. I focus my analysis on research journals that include teacher and/or student participants incorporating mindfulness in school settings. I searched "mindfulness" and "education" through Web of Science and explored organizations or associations related to contemplative practices and education. I then analyzed the subjects on research purpose, research methods, and results. In the results, quantitative research on teachers' stress reduction dominated the research on contemplative education and quantitative research on teachers' efficacy and effectiveness with mindfulness followed. Contemplative research for students focused on their stress reduction and cognitive, social, and emotional development. Contemplative education should be involved in educational settings as pedagogical contents for improving teaching and learning. Contemplative education for students should aim to conduct whole-person education and should incorporate a variety of teaching skills and materials using different contemplative practices, including mindfulness, concentration, compassion, yoga, etc. Teachers' support for and positive relationships with their students through mindfulness and compassion meditation is the most important key to encourage students' learning in education.

Ethnic Variation in Consumption of Traditional Tobacco Products and Lung Cancer Risk in Nepal

  • Raspanti, Greg A;Hashibe, Mia;Siwakoti, Bhola;Wei, Mei;Thakur, Binay Kumar;Pun, Chin Bahadur;Milrod, Charles;Adhikari, Subodh;Lee, Yuan-Chin Amy;Sapkota, Amir
    • Asian Pacific Journal of Cancer Prevention
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    • v.16 no.14
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    • pp.5721-5726
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    • 2015
  • Lung cancer is the leading contributor to cancer deaths in the developing world. Within countries, significant variability exists in the prevalence of lung cancer risk, yet limited information is available whether some of the observed variability is associated with differences in the consumption pattern of local tobacco products with differing potency. We recruited 606 lung cancer cases and 606 controls from the B.P. Koirala Memorial Cancer Hospital in Nepal from 2009-2012. We estimated odds ratios (ORs) and 95% confidence intervals (CI) for lung cancer risk associated with different tobacco products, using unconditional logistic regression. Unfiltered cigarettes tended to be the most frequently used products across ethnic subgroup with about 53.7% of Brahmins, 60.1% of Chettris, and 52.3% of Rai/Limbu/Magar/others. In contrast, about 39.9% of Madishe/Tharu smokers reported using bidi compared with only 27.7% who smoked unfiltered cigarettes. Among those who only smoked one type of product, choor/kankat smokers had the highest lung cancer risk (OR 10.2; 95% CI 6.2-16.6), followed by bidi smokers (OR 5.6; 95% CI 3.6-8.7), unfiltered cigarettes (OR 4.9; 95% CI 3.4-7.2), and filtered cigarettes (OR 3.4; 95% CI 2.2-5.3). A clear dose-response relationship was observed between increased frequency of smoking and lung cancer risk across all ethnic subgroups. These results highlight the important role of traditional tobacco products on lung cancer risk in the low income countries.