• Title/Summary/Keyword: Target Identification

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Identification of ANXA1 as a Lymphatic Metastasis and Poor Prognostic Factor in Pancreatic Ductal Adenocarcinoma

  • Liu, Qing-Hua;Shi, Mei-Lin;Bai, Jin;Zheng, Jun-Nian
    • Asian Pacific Journal of Cancer Prevention
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    • v.16 no.7
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    • pp.2719-2724
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    • 2015
  • Objective: The aim of this study was to investigate the clinical significance of annexin a1 (ANXA1) and provide molecular evidence to support that decreased ANXA1 expression could enhance cancer migration and invasion in pancreatic ductal adenocarcinoma (PDAC). Materials and Methods: Immunohistochemistry of a tissue microarray with 162 surgically resected PDAC specimens was performed to examine the expression of ANXA1. We also investigated the relationship between ANXA1 expression and clinicopathological factors and prognosis of PDAC patients. We further studied the role of ANXA1 in PDAC cell proliferation, migration and invasion by cell proliferation assay, migration assay and matrigel invasion assay with reduced ANXA1 expression by RNAi. Western blotting was used to detect matrix metalloproteinase-9 (MMP-9), and tissue inhibitor of metalloproteinase-1 (TIMP-1) expression. We also detected MMP-9 enzyme activity by gelatin zymography. Results: Decreased expression of ANXA1 was significantly associated with poor differentiation, lymph node metastasis and advanced TNM stage of PDAC patients (p<0.05). Moreover, decreased expression of ANXA1 was correlated with poor survival (p<0.05). Furthermore, we found that ANXA1 knockdown inhibited cell proliferation, induced G1 phase cell cycle arrest, increased PDAC cell migration and invasion capacity compared with controls. In addition, Western blotting showed that ANXA1 knockdown increased the MMP-9 protein level and decreased TIMP-1 expression. Gelatin zymography showed that MMP-9 enzyme activity was also elevated. Conclusions: Negative ANXA1 expression is a most unfavorable prognostic factor for PDAC patients. ANXA1 knockdown inhibits cell proliferation by inducing G1 phase cell cycle arrest and increases migration and invasion of PDAC cells through up-regulating MMP-9 expression and activity, implying that ANXA1 may serve as a promising prognostic biomarker and therapeutic target for PDAC.

Development of CAPS marker for identifying a Formosan lily (Lilium formosanum) (흰나리(Lilium formosanum Wallace) 식별을 위한 CAPS 마커의 개발)

  • Chung, Sung Jin;Lee, Ka Youn;Yoon, A Ra;Jang, Ji Young;Kim, Jin Kug;Lee, Geung-Joo
    • Korean Journal of Agricultural Science
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    • v.41 no.2
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    • pp.101-106
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    • 2014
  • This study was conducted to identify lily species native to Korea from formosan lily (Lilium formosanum) belonging to Longiflorum section. Due to flowering time, flower color and orientation, long shelf life and resistant to diseases, the native lily species can be valuable genetic resources for interspecific hybrids. One of the chloroplast genes, matK, was used to clone and sequence to explore any base changes. The matK was successfully amplified into 1,539 bp (94% of the gene) and phylogenetic tree demonstrated 6 clades for those 11 lily species used in this study. There were one or two base substitutions among 10 lilies native to Korea, while formosan lily native to Taiwan exhibited 6 base substitutions in matK gene, rendering it genetically distant. A restriction enzyme NruI recognized one of the six base changes, and digested the matK gene of 10 native lily species only, but not in formosan lily. The confirmed cleavage characteristic of the target region in matK gene was designed into a CAPS (cleaved amplified polymorphic sequences) marker which will be available to estimate compatibility of interspecific hybridization and to trace the pedigree when those native lilies are crossed with the formosan lily.

The Design and Implementation of the Data Link System based on the Off-the-shelf Ultra Mobile Personal Computer for Network Centric Warfare(NCW) (네트워크중심전(NCW)을 위한 UMPC 기반 데이터 링크 시스템 설계 및 구축)

  • Sim, Dong-Sub;Kim, Ki-Hyung
    • Journal of the Korea Institute of Military Science and Technology
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    • v.12 no.2
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    • pp.175-181
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    • 2009
  • All of the military aircrafts in Korea Air Force are administered and operated together in the same system regardless of whether they are equipped with the data communication capability or not. The absence of the data communication capability in some of the aircrafts might increase whole kill chain hour at the point of the Network Centric Warfare achievement. Network synergy effects cannot also be desired if the section which is not connected to the network influences to the whole tactical network. Equipping aircrafts with the data communication capability could be done by upgrading the aircrafts, but resulting in high costs and long updating time. This paper is a research about the design and implementation of the UMPC based Data Link System to aircrafts that do not have the data communication capability. The proposed system grafts the UHF-based wireless modem technology and the aircraft flight mission support software onto the off-the-shelf UMPC and GPS system. The employed UHF radio equipment allows communicating tactic data with another aircrafts on the air, the ground control point, and even the Tactical Air Control Party(TACP) control vehicle that achieve missions with aircrafts. It thereby increases such capabilities as navigation aid, situation awareness, quick target identification and attack. We also applied Closed Air Support(CAS) scenarios, which is very close to the real environment, to the experiments of the proposed system. The experimental results show that the proposed system could support the data communication capability effectively and the flight mission at low costs of money and time.

A Study on an Efficient Routing Algorithm for Wireless Sensor Network (무선 센서네트워크에서 효율적인 라우팅 알고리즘에 관한 연구)

  • Kim, Byoung-Chan;Yim, Jae-Hong;Choi, Hong-Seok
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.13 no.5
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    • pp.887-898
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    • 2009
  • Conventional routing protocols proposed for wireless sensor networks (WSNs) cannot fully accommodate the characteristics of WSNs. In particular, although it is possible to largely obtain benefits in the solution of energy consumption and global identification problems through applying position information, there are few protocols that actively apply such position information. In the case of geographical and energy aware routing (GEAR) that is a typical algorithm, which uses position information, it does not fully represent the characteristics of WSNs because it is limited to forward query messages and assumed as fixed network environments. The routing protocols proposed in this paper defines the direction of data, which is routed based on the position information of individual and target nodes, in which each node configures its next hop based on this direction and routes signals. Because it performs data-centric routing using position information, it does not require certain global identifications in order to verify individual nodes and is able to avoid unnecessary energy consumption due to the forwarding of packets by defining its direction.

The origin-of-cell harboring cancer-driving mutations in human glioblastoma

  • Lee, Joo Ho;Lee, Jeong Ho
    • BMB Reports
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    • v.51 no.10
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    • pp.481-483
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    • 2018
  • Glioblastoma (GBM) is the most common and aggressive form of human adult brain malignancy. The identification of the cell of origin harboring cancer-driver mutations is the fundamental issue for understanding the nature of GBM and developing the effective therapeutic target. It has been a long-term hypothesis that neural stem cells in the subventricular zone (SVZ) might be the origin-of-cells in human glioblastoma since they are known to have life-long proliferative activity and acquire somatic mutations. However, the cell of origin for GBM remains controversial due to lack of direct evidence thereof in human GBM. Our recent study using various sequencing techniques in triple matched samples such as tumor-free SVZ, tumor, and normal tissues from human patients identified the clonal relationship of driver mutations between GBM and tumor-free SVZ harboring neural stem cells (NSCs). Tumor-free SVZ tissue away from the tumor contained low-level GBM driver mutations (as low as 1% allelic frequency) that were found in the dominant clones in its matching tumors. Moreover, via single-cell sequencing and microdissection, it was discovered that astrocyte-like NSCs accumulating driver mutations evolved into GBM with clonal expansion. Furthermore, mutagenesis of cancer-driving genes of NSCs in mice leads to migration of mutant cells from SVZ to distant brain and development of high-grade glioma through the aberrant growth of oligodendrocyte precursor lineage. Altogether, the present study provides the first direct evidence that NSCs in human SVZ is the cell of origin that develops the driver mutations of GBM.

The Method of Force of Fire in High-Rise Building by Guide to the Fire Safety Concepts Tree: Focusing on Manually Fire Suppression Strategy (화재안전트리 이론에 따른 초고층건축물의 소방력 공급방안: 수동화재진압 전략을 중심으로)

  • Oh, Seong-Ju;Kong, Ha-Sung
    • Fire Science and Engineering
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    • v.34 no.1
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    • pp.79-88
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    • 2020
  • This study analyzes the issue of the supply of force of fire in the high-rise buildings, and proposes an efficient method to do so. The results are as follows. First, in terms of Detect fire, it is necessary to shorten force of fire supply time by diversifying fire alarms such as alarms, vibrations, and voices from outside, clarification of fire occurrence points, and marking of fire. Second, with regard to communication signals, strengthening the installation target of wireless communication auxiliary facilities, supplementing the installation of repeaters, and constructing a multicommunications network were proposed. Third, in terms of Decide action, it is necessary to supply firefighter and firefighting equipment with the method of crossing of a river in adjacent buildings. Fourth, in terms of Respond to site, helicopters and emergency elevators are used to assist in the supply of firefighting equipment using drones. Easy-to-break glass windows and identification marks are required in every floor. Finally, in terms of applying fire suppressants, water can be supplied by means of a helicopter adjacent to the structure.

Arsenic Trioxide Induces Apoptosis and Incapacitates Proliferation and Invasive Properties of U87MG Glioblastoma Cells through a Possible NF-κB-Mediated Mechanism

  • Ghaffari, Seyed H.;Yousefi, Meysam;Dizaji, Majid Zaki;Momeny, Majid;Bashash, Davood;Zekri, Ali;Alimoghaddam, Kamran;Ghavamzadeh, Ardeshir
    • Asian Pacific Journal of Cancer Prevention
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    • v.17 no.3
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    • pp.1553-1564
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    • 2016
  • Identification of novel therapeutics in glioblastoma remains crucial due to the devastating and infiltrative capacity of this malignancy. The current study was aimed to appraise effect of arsenic trioxide (ATO) in U87MG cells. The results demonstrated that ATO induced apoptosis and impeded proliferation of U87MG cells in a dose-dependent manner and also inhibited classical NF-${\kappa}B$ signaling pathway. ATO further upregulated expression of Bax as an important proapoptotic target of NF-${\kappa}B$ and also inhibited mRNA expression of survivin, c-Myc and hTERT and suppressed telomerase activity. Moreover, ATO significantly increased adhesion of U87MG cells and also diminished transcription of NF-${\kappa}B$ down-stream targets involved in cell migration and invasion, including cathepsin B, uPA, MMP-2, MMP-9 and MMP-14 and suppressed proteolytic activity of cathepsin B, MMP-2 and MMP-9, demonstrating a possible mechanism of ATO effect on a well-known signaling in glioblastoma dissemination. Taken together, here we suggest that ATO inhibits survival and invasion of U87MG cells possibly through NF-${\kappa}B$-mediated inhibition of survivin and telomerase activity and NF-${\kappa}B$-dependent suppression of cathepsin B, MMP-2 and MMP-9.

CHRNA5 rs16969968 Polymorphism Association with Risk of Lung Cancer - Evidence from 17,962 Lung Cancer Cases and 77,216 Control Subjects

  • Xu, Zhi-Wei;Wang, Guan-Nan;Dong, Zhou-Zhou;Li, Tao-Hong;Cao, Chao;Jin, Yu-Hong
    • Asian Pacific Journal of Cancer Prevention
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    • v.16 no.15
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    • pp.6685-6690
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    • 2015
  • Background: Genetic studies have shown a possible relationship between the rs16969968 polymorphism in CHRNA5 and the risk of lung cancer. However, the results have been conflicting. Thus we rigorously conducted a meta-analysis to clarify any association. Materials and Methods: A total of 10 case-control studies involving 17,962 lung cancer cases and 77,216 control subjects were analysed. Odds ratios (ORs) with 95% confidence intervals (CIs) were used to measure the strength of the association. Results: We found the CHRNA5 rs16969968 polymorphism to be associated with the risk of lung cancer (AA vs GG: OR=1.60, 95%CI=1.51-1.71). On stratified analysis by smoking status, a statistically significant increased risk was observed in the smoking group (AA vs GG: OR=1.80, 95%CI=1.61-2.01). However, this polymorphism was not associated with lung cancer risk in Asians (AA vs GG: OR=0.95, 95%CI=0.35-2.59), whereas it was linked to increased risk of lung cancer among Caucasians (AA vs GG: OR=1.65, 95%CI=1.55-1.76). Conclusions: Our meta-analysis provided statistical evidence for a strong association between rs16969968 polymorphism and the risk of lung cancer, especially in smokers and Caucasians. Application of this relationship may contribute to identification of individuals at high risk of lung cancer and indicate a chemoprevention target.

QTL mapping of low-temperature germinability and identification of qLTG1 candidate genes in rice

  • Kim, Sun Ha;Shim, Kyu-Chan;Lee, Hyun-Sook;Le, Anh Quynh;Ahn, Sang-Nag
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2017.06a
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    • pp.116-116
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    • 2017
  • Low-temperature is one of the environmental stress factors that affect plant growth and development and consequently limit crop productivity. The control of seed germination under low-temperature is organized by many genes which are called quantitative trait loci (QTLs). High germination rate for low-temperature is an important factor of growing rice. Previously, we identified a major QTL controlling low-temperature germinability in rice using 96 introgression lines (ILs) derived from a cross between Oryza rufipogon (Rufi) and the Korean japonica cultivar, 'Hwaseongbyeo (HS)'. A $BC_3F_7$ line (TR5) showed better low-temperature germinability than its recurrent parent. TR5 was crossed with HS to develop a segregating F2:3 populations for the target QTL. Six SSR markers polymorphic between HS and Rufi were used to screen and fine map the qLTG1. The qLTG1 on chromosome 1, which accounted for 55.5% of the total phenotypic variation, confirmed that Rufi allele enhanced the low-temperature germinability. Intervals between markers CRM16 and CRM15, four candidate genes were identified. The identified candidate genes, which are encoded by a protein of unknown function, showed their direct involvement on seed germination at low-temperature. To identify genes targeted by qLTG1, we investigated the expression profiles of these candidate genes and germination behavior of qLTG1 under different stress conditions and compared to HS, Rufi, and TR5 at $13{\pm}2^{\circ}C$ for 3 days after incubation. Furthermore, transgenic rice plants will also be developed to conduct a detailed investigation on low-temperature germinability. Hence, the QTL for low-temperature germinability would be useful in rice breeding programs especially in the development of lines possessing low-temperature germinability.

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Technical Trend Analysis of a Fault Monitoring System (단층감시시스템 기술현황 분석)

  • Lee, Hyun-Woo
    • The Journal of Engineering Geology
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    • v.21 no.1
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    • pp.87-95
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    • 2011
  • To provide regulatory standards and technical guides that are likely to be required for the Fault Monitoring System (FMS), soon to be installed and operated at the Shin-Wolsong NPP #1, 2 site, technical trend analysis was performed for currently operating geodetic and/or earthquake monitoring systems and activities worldwide, resulting in the identification of several items of concern regarding the design, installation, and operation of FMS at Korean sites. The items are as follows: 1) characterization of site-specific properties (including local noise), 2) selection of measuring instruments/design of appropriate sensitivity for the tectonic behavior of the target, 3) data/electricity backup system, 4) cross-checking and/or cross-referencing system to enhance data quality and credibility, 5) transparent data operation and open-to-the-public policy, and 6) long-term operation in a stable environment.