• Title/Summary/Keyword: TAA

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돼지와 사람의 설사유발 칼리시 바이러서의 염기서열 비교

  • 김현진;조경오;조호성;강성귀;박남용
    • Proceedings of the Korean Society of Veterinary Pathology Conference
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    • 2002.11a
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    • pp.140-140
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    • 2002
  • 돼지 설사유발 칼리시 바이러스 (Porcine enteric calicivirus: PECV)는 자돈에서 설사를 일으키지만, 사람에서도 위장염을 일으키는 원인체인 Sapporo-like calicivirus와 형태학적으로나 유전학적으로 유사하다고 이미 알려졌다. 본 연구는 국내에서 발생하고 있는 PECV의 RNA dependent RNA polymerase (RDRP) 부위와 capsid 부위 염기서열과 아미노산 서열을 기존에 보고되었던 것과 비교하여 분류하였다. 연구 결과 국내 분리주는 기존의 PECV RDRP 부위 (염기서열: 90%, 아미노산: 97%) 와 유사성이 아주 높았으며 capsid 부위(염기서열: 83%, 아미노산: 81%)는 다소 낮았다. 또한 이 바이러스는 모든 칼리시 바이러스의 RDRP 부위에 특이적으로 존재하는 GLPSG와 YGDD 아미노산 배열이 존재하였으며 capsid 부위에서는 국내에서 발생한 PECV 에서만 "TAA" 염기서열이 삽입되어 있었다. 본 연구를 통하여 국내에서 발생한 PECV는 porcine sapporo-like calicivirus와 유사하며 그 외 caliciviridae과인 Norwalk-like virus, Vesivirus, Lagovirus와는 상이하다는 것이 규명되었다.

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Discrimination of Deer Antlers using PCR-RFLP of Mitochondrial D-loop Gene (mtDNA(D-loop)의 PCR-RFLP를 이용한 녹용의 유전자 판별)

  • Lee, Jin-Sung;Oh, Jung-Kyun
    • Proceedings of the KAIS Fall Conference
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    • 2008.11a
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    • pp.469-472
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    • 2008
  • 녹용은 사슴의 뿔을 통칭해 일컫는 말로서 우리나라는 전 세계 녹용 소비량의 80%를 점유하고 있다. 하지만 국내에서 선호되는 것은 러시아산 붉은 사슴 즉, 원용으로 칭하는 것으로 가격 면에서 가장 고가이다. 따라서 수입되는 녹용의 일부가 러시아 산으로 둔갑 판매되는 경우가 발생되고 있다. 본 연구의 목적은 현재 주로 수입되는 녹용으로부터 미토콘드리아 DNA(mtDNA)의 D-loop 유전자의 일부를 PCR로 증폭하고 이들의 염기서열 분석을 통해서 각 수입지역 녹용에 특이적인 RFLP 마커를 탐색하고 이를 녹용의 유전자 감별에 적용코자 하는 것이다. 결과적으로 TaaI과 HaaI 두 종류의 제한효소가 녹용의 원산지를 구별할 수 있는 RFLP 마커로 이용 가능성이 확인되었다.

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Identification of SNP(Single Nucleotide Polymorphism) from MC1R, MITF and TYRP1 associated with Feather Color in Chicken (닭의 모색 연관 유전자인 MC1R, MITF, TYRP1의 SNP(Single Nucleotide Polymorphism) 규명)

  • Kim, Byung Ki;Byun, Youn-Hwa;Ha, Jea Jung;Jung, Daejin;Lee, Yoon-Seok;Hyeong, Ki-Eun;Yeo, Jung-Sou;Oh, Dong-Yep
    • Korean Journal of Poultry Science
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    • v.41 no.1
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    • pp.29-37
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    • 2014
  • The Feather Color of chicken is considered as most obvious, and the purpose of this study is to identify the genotype following the SNP of MC1R, MITF and TYRP1, which are genes related to Feather Color, and develop a SNP marker that can be classified per breed. When a haplotype is observed through the combination of markers, a Korean Native Chicken can especially be distinguished when it is a CGG type in the SNP combination of the MC1R gene. In case of the TAG, TGG and TAA types, only Araucana was identified, and for the CAA type, Leghorn could specifically be distinguished. In the SNP combination of TYRP1 gene, only Leghorn was differentiated in case of the TTTCA and CCTCA types, and only Silky Fowl was identified in case of the CTTTA type. The SNP combination of MC1R gene enabled for Korean Native Chicken, Leghorn, and Araucana to be distinguished and each of the SNP and combination of TYRP1 gene allowed for all 4 breeds to be classified. If many researches are conducted about genetic polymorphism between breeds, then it is considered that the differences between breeds will be understood from a molecular biological aspect instead of simply distinguishing the breeds through Feather Color.

Evaluation of Potential Biomarkers for Thioacetamide-induced Hepatotoxicity using siRNA

  • Kang, Jin-Seok;Yum, Young-Na;Han, Eui-Sik;Kim, Joo-Hwan;Lee, Eun-Mi;Ryu, Doug-Young;Kim, Young-Hee;Yang, Sung-Hee;Kim, Seung-Hee;Park, Sue-Nie
    • Biomolecules & Therapeutics
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    • v.16 no.3
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    • pp.197-202
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    • 2008
  • In our previous publication we compared the gene expression profiles on hepatotoxicants exposure to assess the comparability between in vivo and in vitro test systems. We investigated global gene expression from both mouse liver and mouse hepatic cell line treated with thioacetamide (TAA) and identified several common genes. In this study, we selected genes to validate them as potential biomarkers for hepatotoxicity on the relevance of in vitro and in vivo system. Three up-regulated, aquaporin 8 (Aqp8), glutathione peroxidase 1 (Gpx1), succinate-CoA ligase, GDP-forming, alpha subunit (Suclg1) and two down-regulated, DnaJ (Hsp40) homolog subfamily C member 5 (Dnajc5) and tumor protein D52 (Tpd52) genes were tested for their effects in vitro. For characterization of gene function, short interfering RNA (siRNA) for each gene was synthesized and transfected in mouse hepatic cell line, BNL CL.2. Cell viability, mRNA expression level and morphological alterations were investigated. We confirmed siRNA transfection against selected five genes induced down-regulation of respective mRNA expression. siRNA transfection in general decreased cell viability in different degrees and induced morphological changes such as membrane thickening and alterations of intracellular structures. This suggests that these genes could be associated with TAA-induced toxicity. Furthermore, these genes may be used in the investigation of hepatotoxicity for better understanding of its mechanism.

Corrugated Paperboard Box Laminated Functional MA Film for Freshness Extension of Tomato (기능성 골판지 상자에 포장된 토마토의 신선도)

  • Park, Hyung-Woo;Kang, Jin-Kyung;Park, Jong-Dae;Kim, Dong-Man;Kim, Kee-Jeong
    • KOREAN JOURNAL OF PACKAGING SCIENCE & TECHNOLOGY
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    • v.7 no.2
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    • pp.1-5
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    • 2001
  • This study was measured weight loss, total ascorbic acid, titratable acidity, and soluble solids content and overall appearances to investigate the effect of FC(corrugated fiberboard box laminated with functional MA film)box, LDPE film, CE(functional MA film)pouches and double wall corrugated fiberboard box during storage at $20^{\circ}C$. Weight loss of tomato packed with control, LDPE, CE and FC box at $25^{\circ}C$ after 7 days were 5.3%, 1.5%, 1.3%, and 1.5%, respectively. Weight loss of control was 3.8% higher than that of FC box. Total ascorbic acid content(TAA) of tomato after 7. days, control was 6.89 mg%, LDPE was 8.62 and CE was 8.53mg%, FC was 8.42mg%. TAA of LDPE, CE and FC was higher than that of control. Titratable acidity of tomato packed with LDPE, FC and CE was higher than that of control. Overall appearances of tomato packed with LDPE, CE and FC was better than that of control. Functional MA film laminated in corrugated paperboard box(FC) showed to be able to used as a packaging box of tomato.

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Electroencephalogram Power Spectra in Thioacetamide-induced Hepatic Encephalopathy (Thioacetamide 유발 간성뇌장애에서 뇌파 Power Spectra)

  • Lee, Chi-Hui;Choi, Won-Jin;Park, Jung-Sook;Lee, Hyang-Yi;Ha, Jeoung-Hee;Lee, Maan-Gee
    • The Korean Journal of Pharmacology
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    • v.32 no.3
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    • pp.293-300
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    • 1996
  • During the development of hepatic encephalopathy after thioacetamide (TAA) injection to rat, EEG was recorded at two different states: without or with tactile stimulation of tail at regular intervals. Calculations based on the spectral and band analysis were used. The changes in the power spectra and bands were examined in 3 different behavioral stages: normal, mild ataxia and severe ataxia. In normal rats, the stimulation produced the increase in the power of the theta $(3.5{\sim}8\;Hz)$ and the gamma $(30{\sim}50\;Hz)$ bands. These changes could not be produced in rats with the mild and severe ataxia. The changes in the power of the theta band occurred earlier than those of the beta3 and the gamma bands in the stimulated state. Gradual decreases in the spectral power of the beta3 $(21{\sim}30\;Hz)$ and the gamma bands were correlated with the progress of the stages from normal condition to mild to severe ataxia in both unstimulated and stimulated states. The results indicate that the spectral and band analysis used in this study can quantify the severity of the neurological malfunction during HE.

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Comparative Efficacy of Different Soy Protein Sources on Growth Performance, Nutrient Digestibility and Intestinal Morphology in Weaned Pigs

  • Yang, Y.X.;Kim, Y.G.;Lohakare, J.D.;Yun, J.H.;Lee, J.K.;Kwon, M.S.;Park, J.I.;Choi, J.Y.;Chae, B.J.
    • Asian-Australasian Journal of Animal Sciences
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    • v.20 no.5
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    • pp.775-783
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    • 2007
  • To elucidate the efficacy of different soy protein sources on piglet's performance, a total of 280 weaned piglets ($Duroc{\times}Yorkshire{\times}Landrace$, $23{\pm}3$ d of age, $5.86{\pm}0.45$ kg initial BW) were allotted to 5 treatment diets comprising soybean meal (SBM), soy protein concentrate (SPC), Hamlet protein (HP300), fungal (Aspergillus oryzae) fermented soy protein (FSP-A), and fungal plus bacterial (A. oryzae+Bacillus subtilis) fermented soy protein (FSP-B), respectively. Experimental diets for feeding trial were formulated to contain each soy protein sources at 8% level to corn-whey powder basal diet. There were 14 pigs per pen and 4 pens per treatment. Experimental diets were fed from 0 to 14 d after weaning and then a common commercial diet was fed from 15 to 35 d. Also for ileal digestibility studies, 18 pigs were assigned to 6 dietary treatments as N-free, SBM, SPC, HP300, FSP-A and FSP-B with T-canulation at distal ileum for 6 days. At $14^{th}$ d of experimental feeding, the ADG was significantly higher (p<0.05) in SPC fed diet as compared with others. Similar trend was noticed during the 15-35 d and overall study (0-35 d). All the processed soy protein sources tested in this experiment improved (p<0.05) growth than SBM during overall study. The nutrient digestibility of GE, DM, CP and Ca showed lower (p<0.05) values in SBM and FSP-A fed groups than SPC and FSP-B treatments. The apparent ileal digestibility of TEAA, non-TEAA and TAA showed lower (p<0.05) in SBM treatments compared with other soy protein sources. The true ileal digestibility of TEAA, non-TEAA and TAA were lower (p<0.05) in SBM fed group than SPC and HP300 treatments, and lower than FSP treatments though they didn't achieve significant difference (p>0.05). Villous height and crypt depth was not affected by dietary treatments. In conclusion, the growth and digestibility of nutrients in weaned pigs fed SPC was superior to others. Also FSP-A and FSP-B showed improved performance than those fed SBM.

Cloning of SNAS-25 Gene from Rat Brain cDNA Library (Rat Brain cDNA Library로부터 SNAP-25 유전자의 클로닝)

  • Cho, Ae-Ri;Ji, Young-Mi;Yoo, Min;Lee, Soon-Chul;Yoo, Kwan-Hee
    • Biomedical Science Letters
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    • v.6 no.1
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    • pp.11-17
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    • 2000
  • SNAP-25 was first investigated as a neuron-specific protein preferentially expressed in CA3 pyramidal neurons of mouse hippocampus. It is a presynaptic plasma membrane protein in the nerve cell and plays an important role in the synaptic vesicle membrane docking and fusion pathway. We have recently isolated SNAP-25 cDNA from a rat brain cDNA library using a probe of Z2 cDNA. It consisted of 2,101 bp and an open reading frame (ORF) was identified between nucleotides (nt) 209 and 827. The AUG codon (nt 209∼211) was surrounded by CTACCATGG, which corresponded to the consensus sequence of ribosomal binding site. The ORF was terminated by TAA (nt 827∼829) to encode a polypeptide of 206 amino acid residues. The 3'-untranslated region contained two extensive stretches of repeated (CA)28 and (CA)19 at positions 925∼980 and 1645∼1682. It is noteworthy that cysteine residues were clustered in the span of amino acid residues 84∼991 : Cys-Gly-Leu-Cys-Val-Cys-Pro-Cys. Rat SNAP-25 showed 88% and 97% identity in nucleotide sequences to that of human and mouse, respectively. Amino acid sequence of rat SNAP-25 showed 100% identity to that of mouse and human SNAP-21.

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Varietal Difference of Protein Content and Amino Acid Composition in Sesame (참깨품종의 단백질함량과 아미노산 조성)

  • Seong, Nak-Sul;Lee, Jung-Il;Kang, Chul-Whan;Park, Rae-Kyeong;Chae, Young-Am
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.35 no.5
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    • pp.440-448
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    • 1990
  • To obtain the basic information an seed quality improvement in sesame, protein content of 114 varieties and amino acid composition of 12 varieties was analyzed. Protein content showed the vaietal difference ranged 20.6-30.2% and the mean was 24.72%. The highest variety in protein content was PI158066 (30.2%) originated from U.S.A. Protein content of Korean local varieties were highest among original group analyzed. Seed coat texture and seed coat color affected to protein content so, smooth type was higher than rough type in protein content, and black seeded varieties showed the hight protein content. Amino-acid composition of sesame was uneque in balance and higher than FAO reference. Total amino-acid of variety PI258372 was highest as 25.03%. Essential amino-acid (EAA) /total amino-acid(TAA) ratio of sesame was higher as 42-58.2% than soybean, corn, rice, peanut. Korean local variet 'Samcheck' showed best quality in amino-acid composition as 58.2% in EAA/TAA ratio with high tyrocin and lysine. Total amino acid content was high in order of Korean local '||'&'||'gt; introduced '||'&'||'gt; Korean bred varieties.

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Cloning and Characterization of a Gene Coding for a Dextransucrase from Leuconostoc mesenteroides B-742CB (Leuconostoc mesenteroides B-742CB로부터 Dextransucrase를 Coding하는 유전자 분리 및 특성 연구)

  • 박미란;이소영;류화자;김호상;강희경;유선균;조성용;조동련;김도만
    • KSBB Journal
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    • v.16 no.2
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    • pp.188-199
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    • 2001
  • A gene encoding the dextransucrase(dsCB) that synthesizes mostly $\alpha-(1\rightarrow6)$ linked dextran with low amount(10%) of $\alpha-(1\rightarrow3)$ branching was cloned and sequenced from Leuconostoc mesenteroides B-742CB. The 6.1 kbp DNA fragment carrying dsCB showed one open reading frame(ORF) composed of 4,536bp. The deduced amino acid sequence shows that it begins from the start codon(ATG) at position 698 of the cloned DNA fragment and extends to the termination condon(TAA) at position 5,223. The enzyme is consisted of 1,508 amino acids and has an calculated molecular mass of 168.6kDa. This calculated Mw was in good agreement with an activity band of 170kDa on non-denaturing SDS-PAGE. A recombinant E. coli DH5 $alpha$ harboring pDSCB produced extracellular dextransucrase in 2% sucrose medium, and synthesized both soluble and insoluble dextran. To compare the properties of enzyme with B-742CB dextransucrase, the acceptor reaction, hydrolysis of dextran and methylation were performed. The expressed enzyme showed the same properties as B-742CB dextransucrease, but its ability to synthesize $\alpha-(1\rightarrow3)$ branching was lower than that of B-742CB dextransucrase. In order to identify the critical amino acid residues known as conserved regions related to catalytic activity, Asp-492 was replaced with Asn. D492N resulted in a 1.6 fold decrease in specific activity.

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