• Journal of Korean Society of Coastal and Ocean Engineers
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• v.20 no.2
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• pp.157-167
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• 2008

The aeration of an overtopping wave on a vertical structure generated by a plunging wave was investigated through laboratory measurements of void fraction. The overtopping wave occurring after wave breaking becomes multi-phased and turbulent with significant aeration, so that the void fraction of the flow is of importance. In this study, fiber optic reflectometer and bubble image velocimetry were employed to measure the void fraction, velocity, and layer thickness of the overtopping flow. Mean properties were obtained by ensembleand time-averaging the repeated instantaneous void fractions and velocities. The mean void fractions show that the overtopping wave is very high-aerated near the overtopping wave front and relatively low-aerated near the deck surface and rear free surface of the wave. The flow rate and momentum of the overtopping flow estimated using the measured data show that the void ratio is an important parameter to consider in the multiphase flow. From the similarity profiles of the depth-averaged void fraction, velocity, and layer thickness, one-dimensional empirical equations were obtained and used to estimate the flow rate and momentum of the overtopping flow.

• Journal of Forest and Environmental Science
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• v.16 no.1
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• pp.42-49
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• 2000

This study deals with the structure of Carabid beetle community surveyed in different stands. Species richness and abundance of Carabid beetles were 1,162 individuals, 23 species, 10 genera in the Pinus densiflora stand, 418 individuals, 23 species, 11 genera in the Pinus koraiensis stand, 782 individuals, 25 species, 11 genera in the Larix leptolepis stand, 1,383 individuals 25 species, 12 genera in the Quercus variabilis stand. Dominant species were Synuchus cycloderus(19.8%), Synuchus nitidus(16.6%), Pterostichus pertirax(16.2%) in the Pinus densiflora stand. Pterostichus sp.1(27.9%), Synuchus nitidus(24.4%), Synuchus cycloderus(10.2%) in the Pinus koraiensis stand, Synuchus sp.1(40.0%), Synuchus nitidus(9.3), Pterostichus sp.1(7.4%) in the Larix leptoepis stand. Pterostichus sp.2(17.4%), Synuchus cycloderus(14.4%). Pterostichus pertirax(14.1%) in the Quercus variabili stand. Shannon species diversity index(H') in the Pinus densiflora, Pinus koraiensis, Larix leptolepis and Quercus variabilis stand were 2.11, 2.25, 2.23 and 2.32 respectively and Evenness index(J') were 0.64, 0.72, 0.69 and 0.72, respectively. Community similarity index showed the lowest value (0.66) between Quercus variabilis stand and Pinus koraiensis stand and the highest value (0.83) between Pinus densiflora stand and Larix leptolepis stand.

• Journal of Environmental Science International
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• v.23 no.2
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• pp.291-302
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• 2014

We have studied characteristics of community structure on the benthic macro-invertebrates at twelve selected sites in upstream, midstream and downstream of Paemsagol, Piagol, Chilseongol and Daeseonggol, major streams of Jirisan Mountain, for three years from April 2008 to September 2010. As a result, 2 phyla, 3 classes, 11 orders, 41 families, 119 species and 4,449 individuals of benthic macro-invertebrates have been collected and classified in this study. Among them EPT group (Ephemeroptera, Plecoptera, Trichoptera), commonly appearing taxa in clean stream ecosystem, was found most frequently. The highest species number of benthic macro-invertebrates were collected in 2008, the year with lower climatic influence including heavy rain. In almost all of survey sites 80% or over of EPT group were counted, and St. 1 scored highest rate of EPT group at 92.59%. Most dominant species was Ecdyonurus kibumensis at 12.83% of dominance index, and subdominant species was Goerodes KUb at 6.81% of dominance index. The investigation of the feeding function group indicated that gathering-collectors were dominant with 26 species and 1,334 individuals, while the number of filtering-collectors was lowest with 11 species and 230 individuals. This result represents that the feeding function group of Jirisan Mountain is mountainous stream-specific one. Both diversity index and richness index were lowest at the midstream of Chilseongol (St. 5), while the midstreams of Daeseonggol (St. 11) and Piagol (St. 8) were highest in diversity and richness indices respectively. The analyses of linear regression and correlation were performed in order to investigate and to predict the appearance aspect of EPT group by altitude. The results showed that the ratio of Plecopteran species number has increased by the elevation of the altitude at 0.05 significance level. Cluster analysis was also carried out for evaluating environmental similarities among survey sites. As a result, upper regions of Paemsagol (St. 1) and Piagol have clustered as most similar sites each other, while the midstream of Piagol (St. 8) has separated with lower similarity value than other sites in species composition.

• The Korean Journal of Mycology
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• v.42 no.1
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• pp.50-56
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• 2014

Transposable elements (TEs) are mobile DNA elements that often cause mutations in genes and alterations in the chromosome structure. In order to identify and characterize transposable elements (TEs) in Pleurotus eryngii, a TE-enriched library was constructed using two sets of TE-specific degenerated primers, which target conserved sequences of RT and RVE domains in fungal LTR retrotransposons. A total of 256 clones were randomly chosen from the library and their insert sequences were determined. Comparative investigation of the insert sequences with those in repeat element database, Repbase, revealed that 71 of them were found to be TE-related fragments with significant similarity to LTR retrotransposons from other species. Among the TE sequences, the 70 TEs were Gypsy-type LTR retrotransposons, including 20 of MarY1 from Tricholoma matsutake, 26 of Gypsy-8_SLL from Serpula lacrymans, and 16 of RMER17D_MM from mouse, whereas a single sequence, Copia-48-PTR, was found as only Copia-type LTR retrotransposon. Southern blot analysis of the HindIII-digested P. eryngii genomic DNA showed that the retrotransposon sequences similar to MarY1 and Gypsy-8_SLL were contained as high as 14 and 18 copies per genome, respectively, whereas other retrotransposons were remained low. Moreover, both of the two Gypsy retrotransposons were expressed in full length mRNA as shown by Northern blot analysis, suggesting that they were functionally active retrotransposons.

• Journal of Ginseng Research
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• v.38 no.2
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• pp.130-135
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• 2014

Background: Panax ginseng, the most famous medicinal herb, has a highly duplicated genome structure. However, the genome duplication of P. ginseng has not been characterized at the sequence level. Multiple band patterns have been consistently observed during the development of DNA markers using unique sequences in P. ginseng. Methods: We compared the sequences of multiple bands derived from unique expressed sequence tagsimple sequence repeat (EST-SSR) markers to investigate the sequence level genome duplication. Results: Reamplification and sequencing of the individual bands revealed that, for each marker, two bands around the expected size were genuine amplicons derived from two paralogous loci. In each case, one of the two bands was polymorphic, showing different allelic forms among nine ginseng cultivars, whereas the other band was usually monomorphic. Sequences derived from the two loci showed a high similarity, including the same primer-binding site, but each locus could be distinguished based on SSR number variations and additional single nucleotide polymorphisms (SNPs) or InDels. A locus-specific marker designed from the SNP site between the paralogous loci produced a single band that also showed clear polymorphism among ginseng cultivars. Conclusion: Our data imply that the recent genome duplication has resulted in two highly similar paralogous regions in the ginseng genome. The two paralogous sequences could be differentiated by large SSR number variations and one or two additional SNPs or InDels in every 100 bp of genic region, which can serve as a reliable identifier for each locus.

• Journal of the Institute of Electronics Engineers of Korea CI
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• v.48 no.2
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• pp.16-27
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• 2011

Embryo is a very early stage of the development of multicellular organism such as animals and plants. It is an important research target for studying ontogeny because the fundamental body system of multicellular organism is determined during an embryo state. Researchers in the developmental biology have a large volume of embryo image databases for studying embryos and they frequently search for an embryo image efficiently from those databases. Thus, it is crucial to organize databases for their efficient search. Hierarchical clustering methods have been widely used for database organization. However, most of previous algorithms tend to produce a highly skewed tree as a result of clustering because they do not simultaneously consider both the size of a cluster and the number of objects within the cluster. The skewed tree requires much time to be traversed in users' search process. In this paper, we propose a method that effectively organizes a large volume of embryo image data in a balanced tree structure. We first represent embryo image data as a similarity-based graph. Next, we identify clusters by performing a graph partitioning algorithm repeatedly. We check constantly the size of a cluster and the number of objects, and partition clusters whose size is too large or whose number of objects is too high, which prevents clusters from growing too large or having too many objects. We show the superiority of the proposed method by extensive experiments. Moreover, we implement the visualization tool to help users quickly and easily navigate the embryo image database.

• Asian-Australasian Journal of Animal Sciences
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• v.21 no.7
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• pp.917-922
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• 2008

A disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif (ADAMTS1) plays a critical role in follicular rupture and represents a major advance in the proteolytic events that control ovulation. In this study, a 9,026-bp DNA sequence containing the full coding region, all 8 introns and part of the 5'and 3' untranslated region of the porcine ADAMTS1 gene was obtained. Analysis of the ADAMTS1 gene using the porcine radiation hybrid panel indicated that pig ADAMTS1 is closely linkage with microsatellite marker S0215, located on SSC13q49. The open reading frame of its cDNA covered 2,844 bp and encoded 947 amino acids. The coding region of porcine ADAMTS1 as determined by sequence alignments shared 85% and 81% identity with human and mouse cDNAs, respectively. The deduced protein contained 947 amino acids showing 85% sequence similarity both to the human and mouse proteins, respectively. Comparative sequencing of three pig breeds revealed one single nucleotide polymorphism (SNP) within exon 7 of which a G-C substitution at position 6006 changes a codon for arginine into a codon for proline. The substitution was situated within a PvuII recognition site and developed as a PCR-RFLP marker for further use in population variation investigations and association analysis with litter size. Allele frequencies of this SNP were investigated in seven pig breeds/lines. An association analysis in a new Qingping female line suggested that different ADAMTS1 genotypes have significant differences in litter size (p<0.01).

• Korean Journal of Environment and Ecology
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• v.19 no.3
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• pp.258-268
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• 2005

The objective of this study was to monitor the edge vegetation development process after timber harvesting at deciduous hardwood forest in Seoul National University Research Forest of Baekwoonsan (Mt), Korea The results from the 4th (2001) and 5th (2003) survey for edge vegetation development process after timber harvesting are summarized as follows. The competitive species at the harvested forest edge are Lindera erythrocarpa, Weigela subsessilis, Lespedeza maximowiczii, Lindera obtusiioba, Arajia eiata. There were Lindera erythrocarpa, Ivelgela subsessilis, Staphyiea bumaida as competitive species at harvested forest border between harvested forest edge and harvested interior. And at the forest interior, the competitive species were Lindera erythrocarpa, Lindera obtusiloba. There were differences in the competitive species at the forest edge due to the differences in direction, altitude, and existing dominant species. But Lindera erythrocarpa, Weigela subsessilis were appeared to be a competitive specieg at the southwestern slope (A site) and northeastern slope (B site). After timber harvesting, Sasa borealisshowed a good growth in early days, but showed a tendency of declining with the developing of canopy layer And coverage was generally higher at the Northeastern slope (Site B) than southwestern slop (Site A). The similarity index was lower as the distance from the forest edge becomes farther.

• Journal of KIISE
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• v.44 no.2
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• pp.139-147
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• 2017

Most of the information prevailing in the Internet space consists of textual information. So one of the main topics regarding the huge document analyses that are required in the "big data" era is the development of an automated understanding system for textual data; accordingly, the automation of the keyword extraction for text summarization and abstraction is a typical research problem. But the simple listing of a few keywords is insufficient to reveal the complex semantic structures of the general texts. In this paper, a text-visualization method that constructs a graph by computing the related degrees from the selected keywords of the target text is developed; therefore, two construction models that provide the edge relation are proposed for the computing of the relation degree among keywords, as follows: influence-interval model and word- distance model. The finally visualized graph from the keyword-derived edge relation is more flexible and useful for the display of the meaning structure of the target text; furthermore, this abstract graph enables a fast and easy understanding of the target text. The authors' experiment showed that the proposed abstract-graph model is superior to the keyword list for the attainment of a semantic and comparitive understanding of text.

• Journal of the Korean Society of Fisheries and Ocean Technology
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• v.43 no.2
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• pp.101-115
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• 2007

The pound net fishery is very important one in Korean coastal fishery and it need to grasp the characteristics of the net affected by many factors. It is considered that the structure and the shape of the pound net can be changed by the direction and speed of current, wave height, depth and conditions of sea bed. However, most of all, the speed of current and wave height influence more upon the pound net than any other factors to deform and flutter. In this study, author carried out the experiments with a model of double one-side pound net made by the similarity law as 1:100 scales at a real experimental area, and additionally the model net experiments were conducted in the circulating water channel in Pukyong National University. The author analyzed the data of transformation of shape and tension of the model pound net to recognize the characteristics of the current and wave acting on it. Regardless of the direction of flow affecting on the fish court net or bag net, the deformed angle and depth to the side panel and bottom of box nets becomes bigger as the wave gets higher and the period of wave is faster. The tension in both upward or downward tends to be changed by the speed of wave. Those value of changes occurred similarly in either fish court net or bag net. Generally, when bag net is located at upward of flow, the value of tension was bigger 10% than any other location or nets. Regardless of the setting direction, the tension of the pound net is increased in proportion to flow speed, wave height and period of wave, and it becomes bigger about 15-30% at upward to flow than downward. Where the flow is upward in the court net, the tension in the wave increased to 37% compared to the one in the flow only in the condition of flow of 0.1-0.3m/s. Where the flow is upward in the bag net, the tension in the wave increased to 52% in the flow of 0.1m/s, and the tension increased to 48% in the flow of 0.2-0.3m/s.