• Title/Summary/Keyword: Structure Similarity

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Comparison of Community Structure and Biodiversity of Arthropos between Coventional and Organic Red Pepper Fields (관행 고추밭과 유기농 고추밭에서 절지동물의 군집 구조와 생물다양성의 비교)

  • Lee, Sue-Yeon;Kim, Seung-Tae;Im, Jae-Seong;Jung, Jong-Kook;Lee, Joon-Ho
    • Korean Journal of Organic Agriculture
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    • v.21 no.4
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    • pp.601-615
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    • 2013
  • This study was conducted to compare the community structure and biodiversity of arthropods between conventional and organic red pepper fields. A total of 36 species of 24 families belonging to 10 orders from collected 28,718 arthropods; 6,901 individuals from conventional field and 21,871 individuals from organic field. A number of species comprising arthropod community was same in both fields as 32 species. Species richness of Diptera was the highest in conventional field and that of Hymenoptera and Colembolla was the highest in organic field. Abundance of Frankliniella intonsa was the highest regardless of farming method. Helicoverpa assulta was dominant in conventional field, and Homidia mediaseta, Diptera sp. 4 and Pardosa astrigera were dominant in organic field. Diversity of community on the ground was higher in organic field and statistically different. Similarity of arthropod community showed difference with 34.07% on the ground and 26.95% in the plant above ground. In the ecologically functional guild: species richness of general, pest and parasitoid of natural enemy groups in the plant above ground were statistically different and pest and parasitoid groups were higher in organic field, abundance of predator group of natural enemy on the ground was 2 times higher in organic field and statistically different and diversity of general and parasitoid groups in the plant above ground were statistically different. In the relative occupancy rate, pest group was the highest in conventional field and decomposer group was the highest in organic field. The results of present study is considered to provide useful information of arthropod community for developing efficient insect pest management in organic farming.

Selecting the Optimal Research Time for Forest Birds Census in Each Season (산새류의 계절별 적정 조사시간 선정 연구)

  • Kim, Mi-Jeong;Lee, Soo-Dong;Kim, Ji-Suk
    • Korean Journal of Environment and Ecology
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    • v.27 no.2
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    • pp.219-229
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    • 2013
  • This research is performed in order to suggest seasonal effective research time that is applied to wild birds research which lives in a forest. The subject area of this research is Mulgun-ri village forest in Samdong-Myeon, Namhe-gun. To investigate suitability of the project, existing land-use, existing vegetation, vegetational structure, and etc. of the subject and whole area are figured out. To suggest adequate research time, based on seasonal sun rise and set time for 3days, repetitive research is performed at hourly intervals. The subject area is connected with a forest and is possible for forest wild birds to flows in and provides various habitats and feeding areas. And also the subject area is a appropriate area for wild birds research and is like a natural forest in that a layer structure development of the forest itself, a distribution of Zelkova serrata and Aphananthe aspera and so on. 105 species which is observed in subject area are categorized and mountain birds are classified. After time-based peak value is selected in each season, hourly species richness, diversity, and index of similarity are analyzed as compared with the appearing number of species and individual bird. As a result, 7~11 hour is the most effective time in spring, and 8~9 hour is the best time. In summer, 6~9 hour is the most appropriate time when whole appearing species are similar to species structure. In fall, 7~11(30~60 minutes after sun rise) when wild birds movements are vigorous is analyzed easy to observe and 8~9 hour is the most appropriate research time because each analysis shows the best values. In winter, 7~12 hour is the most effective time although 10~11 hour is the best time but it is decided that similar results are drawn because hourly deviation is not so big except 1 hour before sun rise. In every four season, it is decided that 30~60 minutes after sun rise is appropriate to research a group of wild birds in the subject area.

Community Structure of Macrobenthic Assemblages around the Wolseong Nuclear Power Plant, East Sea of Korea (월성 원자력발전소 주변해역에 서식하는 대형저서동물의 군집구조)

  • Seo, In-Soo;Moon, Hyung-Tae;Choi, Byoung-Mi;Kim, Mi-Hyang;Kim, Dae-Ik;Yun, Jae-Seong;Byun, Ju-Young;Choi, Hue-Chang;Son, Min-Ho
    • Korean Journal of Environmental Biology
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    • v.27 no.4
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    • pp.341-352
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    • 2009
  • This study was carried out to investigated community structure of macrobenthic assemblages around the Wolseong Nuclear Power Plant, East Sea of Korea and seasonal sampling was performed from October 2007 to July 2008. A total of 163 macrobenthic fauna were collected. The overall average macrobenthos density and biomass were 1,005 individuals $m^{-2}$ and $21.81\;gWWt\;m^{-2}$, respectively. Based on the LeBris (1988) index, there were 10 dominant species accounting for approximately 69.00% of total individuals. The major dominant species were the polychaetes Spiophanes bombyx (349 inds. $m^{-2}$), Mediomastus californiensis (82 inds. $m^{-2}$), Sigambra tentaculata (55 inds. $m^{-2}$), Magelona japonica (50 inds. $m^{-2}$), Scoletoma longifolia (33 inds. $m^{-2}$) and the Unidentified amphipod (Amphipoda spp., 72 inds. $m^{-2}$). The conventional multi-variate statistics (cluster analysis and non-metric multi-dimensional scaling) applied to assess spatial variation in macrobenthic assemblages. Cluster analysis and nMDS ordination analysis based on the Bray-Curtis similarity identified 2 major station groups. The major group 1 was associated with sand dominated stations and was characterized by high abundance of the bivalves Mactra chinensis, Siliqua pulchella and the polychaete Protodorvillea egena. On the other hand, major group 2 was connected with mud dominated stations and was numerically dominated by the polychaetes M. californiensis, M. japonica, Sternaspis scutata, S. longifolia and the bivalves Thyasira tokunagai and Theora fragilis. However, macrobenthic community structure were no significant differences between the environmental variables (sediment type and depth) and heated discharge.

Community Structure of Fish and Inhabiting Status of Endangered Species, Cobitis choii and Gobiobotia naktongensis in the Ji Stream, a Tributary of the Geum River Drainage System of Korea (금강 수계 지천의 어류군집 구조 및 멸종위기종 미호종개 Cobitis choii와 흰수마자 Gobiobotia naktongensis의 서식현황)

  • Ko, Myeong-Hun;Moon, Shin-Joo;Lee, Sang-Jun;Bang, In-Chul
    • Korean Journal of Ecology and Environment
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    • v.45 no.4
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    • pp.356-367
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    • 2012
  • Community structure of fish and inhabiting status of endangered species, Cobitis choii and Gobiobotia naktongensis were investigated in the Ji Stream, a tributary of the Geum River Drainage System of Korea from May to October 2011. Ten to 23 fish species inhabited upper stream (St. 1~St. 4) with a Aa-Bb river type composed of mostly pebble and cobble bottoms, 16~28 species did middle stream (St. 5~St. 7) with a Bb type composed of mostly cobble and boulder bottoms, and 20-29 species did lower stream (St. 8~St. 10) with a Bb-Bc type composed of mostly sand bottoms. A total of 44 species belonging to nine families were found in the stream during the survay. The dominant species were in the order of Zacco platypus (37.2%), Pungtungia herzi (5.8%) and Pseudogobio esocinus (5.5%). Other abundant species included Acheilognathus lanceolatus (5.3%), Zacco koreanus (5.2%), Hemibarbus longirostris (4.9%) and Squalidus gracilis majimae (3.5%). Among residing species, 16 species were endemic to Korea, two (Cobits choii and Gobiobotia naktongensis) were endangered, and one (Micropterus salmoides) was non-indigenous. The similarity index based on species composition and abundance clearly delineated the fish community of the Ji Stream according to the three major sections, which were defined at the above. Dominance index gradually decreased toward downstream, while diversity, evenness and species richness indexes gradually increased toward downstream. The two endangered species, C. choii and G. naktongensis co-occurred at the lower stream due to the prevalence of a sandy substratum.

A Study on Prospective Plan Comparison using DVH-index in Tomotherapy Planning (토모 테라피 치료 시 선량 체적 히스토그램 표지자를 이용한 치료계획 비교에 관한 연구)

  • Kim, Joo-Ho;Cho, Jeong-Hee;Lee, Sang-Kyoo;Jeon, Byeong-Chul;Yoon, Jong-Won;Kim, Dong-Wook
    • The Journal of Korean Society for Radiation Therapy
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    • v.19 no.2
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    • pp.113-122
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    • 2007
  • Purpose: We proposed the method using dose-volume Histogram index to compare prospective plan trials in tomotherapy planning optimization. Materials and Methods: For 3 patients in cranial region, thorax and abdominal region, we acquired computed tomography images with PQ 5000 in each case. Then we delineated target structure and normal organ contour with pinnacle Ver 7.6c, after transferred each data to tomotherapy planning system (hi-art system Ver 2.0), we optimized 3 plan trials in each case that used differ from beam width, pitch, importance. We analyzed 3 plan trials in each region with isodose distribution, dose-volume histogram and dose statistics. Also we verified 3 plan trials with specialized DVH-indexes that is dose homogeneity index in target organ, conformity index around target structure and dose gradient index in non-target structures. Results: We compared with the similarity of results that the one is decide the best plan trial using isodose distribution, dose volume histogram and dose statistics, and the another is using DVH-indexes. They all decided the same plan trial to better result in each case. Conclusion: In some of case, it was appeared a little difference of results that used to DVH-index for comparison of plan trial in tomotherapy by special goal in it. But because DVH-index represented both dose distribution in target structure and high dose risk about normal tissue, it will be reasonable method for comparison of many plan trials before the tomotherapy treatments.

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Social Network Analysis for the Effective Adoption of Recommender Systems (추천시스템의 효과적 도입을 위한 소셜네트워크 분석)

  • Park, Jong-Hak;Cho, Yoon-Ho
    • Journal of Intelligence and Information Systems
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    • v.17 no.4
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    • pp.305-316
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    • 2011
  • Recommender system is the system which, by using automated information filtering technology, recommends products or services to the customers who are likely to be interested in. Those systems are widely used in many different Web retailers such as Amazon.com, Netfix.com, and CDNow.com. Various recommender systems have been developed. Among them, Collaborative Filtering (CF) has been known as the most successful and commonly used approach. CF identifies customers whose tastes are similar to those of a given customer, and recommends items those customers have liked in the past. Numerous CF algorithms have been developed to increase the performance of recommender systems. However, the relative performances of CF algorithms are known to be domain and data dependent. It is very time-consuming and expensive to implement and launce a CF recommender system, and also the system unsuited for the given domain provides customers with poor quality recommendations that make them easily annoyed. Therefore, predicting in advance whether the performance of CF recommender system is acceptable or not is practically important and needed. In this study, we propose a decision making guideline which helps decide whether CF is adoptable for a given application with certain transaction data characteristics. Several previous studies reported that sparsity, gray sheep, cold-start, coverage, and serendipity could affect the performance of CF, but the theoretical and empirical justification of such factors is lacking. Recently there are many studies paying attention to Social Network Analysis (SNA) as a method to analyze social relationships among people. SNA is a method to measure and visualize the linkage structure and status focusing on interaction among objects within communication group. CF analyzes the similarity among previous ratings or purchases of each customer, finds the relationships among the customers who have similarities, and then uses the relationships for recommendations. Thus CF can be modeled as a social network in which customers are nodes and purchase relationships between customers are links. Under the assumption that SNA could facilitate an exploration of the topological properties of the network structure that are implicit in transaction data for CF recommendations, we focus on density, clustering coefficient, and centralization which are ones of the most commonly used measures to capture topological properties of the social network structure. While network density, expressed as a proportion of the maximum possible number of links, captures the density of the whole network, the clustering coefficient captures the degree to which the overall network contains localized pockets of dense connectivity. Centralization reflects the extent to which connections are concentrated in a small number of nodes rather than distributed equally among all nodes. We explore how these SNA measures affect the performance of CF performance and how they interact to each other. Our experiments used sales transaction data from H department store, one of the well?known department stores in Korea. Total 396 data set were sampled to construct various types of social networks. The dependant variable measuring process consists of three steps; analysis of customer similarities, construction of a social network, and analysis of social network patterns. We used UCINET 6.0 for SNA. The experiments conducted the 3-way ANOVA which employs three SNA measures as dependant variables, and the recommendation accuracy measured by F1-measure as an independent variable. The experiments report that 1) each of three SNA measures affects the recommendation accuracy, 2) the density's effect to the performance overrides those of clustering coefficient and centralization (i.e., CF adoption is not a good decision if the density is low), and 3) however though the density is low, the performance of CF is comparatively good when the clustering coefficient is low. We expect that these experiment results help firms decide whether CF recommender system is adoptable for their business domain with certain transaction data characteristics.

The Structure of Vegetation in Chamaecyparis obtusa Plantations (편백인공림(人工林)의 식생구조(植生構造)에 관(關)한 연구(硏究))

  • Goo, Gwan Hyo;Lee, Kang Young
    • Journal of Korean Society of Forest Science
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    • v.80 no.4
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    • pp.393-407
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    • 1991
  • The vegetation structure within Chamaecyparis obtusa plantation was analyzed for the purpose of applying the effective forestation method for Chmaecyparis obtusa plantation, tending and regeneration in the southern districts of korea. The results were as follows ; 1. The importance percentage was high in the order of Eurya japonica, Rhus verniciflua, Chamaecyparis obtusa, Lindera erythrocarpa, Carpinus laxiflora, Styrax japonica, Viburnum dilatatum, Zanthoxylum piperitum and Smilax china among the vegetation of Chamaecyparis obtusa. Importance percentage of natural seedling of Chamaecyparis obtusa was high in lower story but gradually decreased in middle story. 2. The basal area of upper trees had a negative correlation with the density of natural seedlings in the middle and lower story, and it represents that the basal area of upper trees had some effect on the density of natural seedlings within understories. 3. The rate of the A and B class by Raunkiaer's frequency was higher in the vegetation of middle story than that of lower story. 4. By Morisita's index, the species of Chamaecyparis obtusa, Rhus verniciflua, Lindera erythrocarpa, Smilax china. Callicarpa japonica and Lindera obtusiloba were randomly distributed at lower story, but they were aggregatively distributed at middle story. At all of middle and lower story, Eurya japonica and Viburum dilatatum were randomly distributed, and Carpinus laxiflora, Zanthoxylum piperitum and Picrasma quassioides were aggregatively distributed. 5. The number of appearance species and the value of species diversity in western survey area were more than that of eastern survey area. 6. The value of species diversity at lower story was higher than that of middle story, and it represents that the number of individuals of appearance species was composed more even at lover story than middle story. 7. According to cluster analysis by similarity index, the survey areas were separated from inland and seacoast districts. 8. Judging from each stories ordination analysis by dissimilarity index, the vegetation was separated from lower and middle story, and the vegetation of lower story was more progressed succession stage than that of middle story. 9. In Chamaecyparis obtusa stands, Eurya japonica had a positive correlation with Sorbus alnifolia, Hex macropoda. Ficus erecta and Trachelospermum asiaticum, but it had a negative correlation with Zanthoxylum piperitum, Carpinus laxiflora and Parthenocissus tricuspidata. 10. In estimation of the productivity of Chamaecyparis obtusa stands, the value of SC (Conic surface) and VP (Parabolic volume) for upper trees was 94.5% and 99.63%, respectively and SC and VP of middle story was 5.49% and 0.37%, respectively. In the species of middle story, material productivity was high in order of Eurya japonica. Lindera eryhrocarpa, Rhus verniciflua. Carpinus laxiflora and Styrax japonica.

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Ichthyofauna and Community Structure from 21 Lakes in the Yeungnam Area including Gyeongsangbukdo and Gyeongsangnam-do Provinces, Korea (영남지역 21개 호소의 어류상과 군집구조)

  • Kim, Sang-Ki;Kang, Yeong-Hoon;Hong, Gi-Bung;Yoo, Dong-Uk;Suk, Ho-Yeong;Chae, Byung-Soo;Kim, Han-Sun;Hwang, Ui-Wook
    • Korean Journal of Ichthyology
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    • v.23 no.4
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    • pp.288-299
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    • 2011
  • Freshwater fish fauna and community structure were surveyed through 21 lakes in the Yeungnam area including Gyeongsangbukdo and Gyeongsangnamdo provinces, Korean Peninsula from April 2008 to October 2009. Among 21 lakes, 16 lakes belong to the Nakdong River and 5 are independent drainages. From the present study, 61 species (44 genera, 15 families) were collected including 32 cyprinid species (52.5%), 6 cobitid species (9.8%) and so on. The dominant and subdominant species in aspect of the number of individuals were Hypomesus nipponensis (26.6%) and Squalidus gracilis majimae (14.8%), respectively. On the other hand, in aspect of in biomass, dominant and subdominant species were Lepomis macrochirus (19.8%) and Cyprinus carpio (14.7%), respectively. Among 61 examined species, there were found 20 Korean endemic species and 2 Korean endangered species (Pseudobagrus brevicorpus and Pungitius kaibarae). P. brevicorpus was found in Yongyeonji and Yeongcheonho, and P. kaibarae in Yongyeonji. In addition, 5 exotic species were identified such as Cyprinus carpio nudus (leather carp), Carassius cuvieri, Hypophthalmichthys molitrix, Lepomis macrochirus and Micropterus salmoides. Interestingly, a bluegill L. machrochirus appeared dominant or subdominant species in 5 of 21 examined lakes. Five species introduced from the other rivers in Korean Peninsula were additionally described. In the present study, it was first reported that Micropercops swinhonis inhabits in the Nakdong river basin. The fish species diversity, evenness and dominant indices were examined, and a dendrogram based on similarity indices of inhabiting species among the 21 examined lakes was constructed and discussed.

Planting Plan of Ecological Corridor at Destroyed Mountain Area as a Result of Road Construction (도로개발에 의하여 훼손된 산림지역 생물이동통로 식재계획)

  • 이경재;한봉호
    • Korean Journal of Environment and Ecology
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    • v.16 no.3
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    • pp.321-337
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    • 2002
  • This study was carried out to draw up the planting plan of bridge type ecological corridor for animals migration at Hakgogae(ridge) destroyed by road construction in Yongin, Gyeonggi-do, South Korea. It was conducted with two steps, survey and planting master plan. We surveyed the structure of topography, plant community, and animal habitat. We also selected the target species migrate ecological corridor and suggested a concept of each planting area, the planting species, and the planting density based on the analyzed data and finally drew up the planting plan. The structure of topography was a steep slope due to the mountain ridge destruction so the bridge type ecological corridor was could be applied in this study and we supposed that the animals migrate along the both edge of corridor. As the results of analyzed plant community structure in two sides, the dominant woody species, Quercus serrata and Q. variabilis were distributed on the bottom and the belly of a mountain, while Pinus densiflora community was distributed on the mountain ridge as edaphic climax. The similarity between Q. serrata -Q. mongolica -Q. variabilis community on the West of survey site and Q. serrata -Q. mongolica community on the East of survey site was high in 71.0 percentages. As the results of surveying birds and some mammalia, seven species and fifty-seven individuals of birds were founded in survey area, and two species and two individuals of rodents were founded. We selected birds and some mammals for the migration species that supposed to migrate ecological corridor in drawing up the planting plan. And then we divided the planting areas into bird corridor and habitat, and mammals corridor, also suggested the planting areas in detail as follows: community planting area of shrub at slope adjacent to the bridge exit as a buffer zone, screen planting area, community planting area of herb at steep slope connected with mountain areas, inducement planting area of the animals, community planting area for bird migration, community planting area for mammals migration, and community planting area for bird habitat. We selected the planting woody species which were the constancy ratio based on the analyzed data of plant community around mountain areas was high, and suggested the planting master plan each space.

Molecular Cloning and Characterization of the Yew Gene Encoding Squalene Synthase from Taxus cuspidata

  • Huang, Zhuoshi;Jiang, Keji;Pi, Yan;Hou, Rong;Liao, Zhihua;Cao, Ying;Han, Xu;Wang, Qian;Sun, Xiaofen;Tang, Kexuan
    • BMB Reports
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    • v.40 no.5
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    • pp.625-635
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    • 2007
  • The enzyme squalene synthase (EC 2.5.1.21) catalyzes a reductive dimerization of two farnesyl diphosphate (FPP) molecules into squalene, a key precursor for the sterol and triterpene biosynthesis. A full-length cDNA encoding squalene synthase (designated as TcSqS) was isolated from Taxus cuspidata, a kind of important medicinal plants producing potent anti-cancer drug, taxol. The full-length cDNA of TcSqS was 1765 bp and contained a 1230 bp open reading frame (ORF) encoding a polypeptide of 409 amino acids. Bioinformatic analysis revealed that the deduced TcSqS protein had high similarity with other plant squalene synthases and a predicted crystal structure similar to other class I isoprenoid biosynthetic enzymes. Southern blot analysis revealed that there was one copy of TcSqS gene in the genome of T. cuspidata. Semi-quantitative RT-PCR analysis and northern blotting analysis showed that TcSqS expressed constitutively in all tested tissues, with the highest expression in roots. The promoter region of TcSqS was also isolated by genomic walking and analysis showed that several cis-acting elements were present in the promoter region. The results of treatment experiments by different signaling components including methyl-jasmonate, salicylic acid and gibberellin revealed that the TcSqS expression level of treated cells had a prominent diversity to that of control, which was consistent with the prediction results of TcSqS promoter region in the PlantCARE database.