• Korean Journal of Plant Taxonomy
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• v.39 no.4
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• pp.237-246
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• 2009

Inter-specific relationships among six species and two varieties, belonging to Scrophularia (Scrophulariaceae), in Korea were re-examined based on both morphological and molecular data. Scrophularia takesimensis, a Korean endemic species, should be separated from S. grayana as an independent species based upon unique morphological characters such as non-winged stems, thickened leaves and glabrous surfaces of leaves, even though they share a lot of other features. It was found that S. grayana is distributed in Sokcho in Korea and along the coast of the East Sea north to far eastern Russia. Although some morphologies of three taxa, S. cephalantha, S. koraiensis var. velutina and S. kakudensis var. microphylla appeared to differ from each other, their ITS DNA sequence data was similar to that of S. kakudensis, suggesting that they might better be designated with the later species. The taxonomic position of S. koraiensis, only found in Korea, has been ambiguous, but ITS DNA sequence data in this study revealed that this species is distinct from S. kakudensis. Consequently, we conclude that the genus Scrophularia in Korea includes five species.

• The Korea Journal of Herbology
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• v.25 no.4
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• pp.47-54
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• 2010

Objectives : The original plant species of Schisandrae Fructus (O-mi-ja) is prescribed as Schisandra chinensis $B_{AILL.}$, in Korea, but S. chinensis $B_{AILL.}$ and S. sphenanthera $R_{EHD.}$ et $W_{ILS.}$ in China. Moreover, fruit of several other species in genus Schisandra also have been used as the same herbal medicines. To develop a reliable method for correct identification of Schisandrae Fructus and to evaluate the phylogenetic relationship of S. chinensis and its related species, we analyzed internal transcribed spacer (ITS) sequences of nuclear ribosomal DNA (nrDNA). Methods : Twenty-four plant samples of three Schisandra species and one Kadsura species, S. chinensis $B_{AILL.}$, S. spenanthera $R_{EHD.}$ et $W_{ILS.}$, S. nigra $M_{ax.}$ and Kadsura japonica $D_{UNAL}$ were collected from each different native habitate and farm in Korea and China. The nrDNA-ITS region of each samples were amplified using ITS1 and ITS4 primer and nucleotide sequences were determined after sub-cloning into the pGEM-Teasy vector. Authentic marker nucleotides were estimated by the analysis of ClastalW based on the entire nrDNA-ITS sequence. Results : In comparative analysis of the nrDNA-ITS sequences, we found specific nucleotide sequences including indels (insertions and deletions) and substitutions to distinguish C. chinensis, S. spenanthera, S. nigra, and K. japonica. These sequence differences at corresponding positions are avaliable nucleotide markers to determine the botanical origin of O-mi-ja. Moreover, we evaluated the phylogenetic relationship of four plant species by the analysis of nrDNA-ITS sequences. Conclusions : These marker nucleotides would be useful to identify the official herbal medicines by the providing of definitive information that can identify each plant species and distinguish it from unauthentic adulterants for O-mi-ja.

• Journal of the Korean Society of Environmental Restoration Technology
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• v.12 no.5
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• pp.42-58
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• 2009

This study was carried out to survey the vascular plants of the construct-reserved site of ecological forest in Kohang-ri, Sangri-myeon, Yecheon-gun, Gyeongsangbuk-do, Korea. The results are as follows. The vascular plants in this site were recorded as 392 taxa; 85 families, 254 genera, 341 species, 45 varieties and 6 forma. The Korean endemic plants were 5 taxa; Salix hallaisanensis, Clematis trichotoma, Chrysosplenium barbatum, Philadelphus schrenckii and Weigela subsessilis. The rare plants designated by Korea Forest Service were 2 taxa; Iris ensata var. spontanea and Aristolochia contorta. The naturalized plants were 25 taxa; Bromus tectorum, Dactylis glomerata, Panicum dichotomiflorum, Bilderdykia dumetora and so forth. In the results of analysis by floristic region, the specific plants were summarized as 31 taxa; Matteuccia struthiopteris, Oxalis obtriangulata, Betula davurica, Cimicifuga heracleifolia and so forth. The plants with approval for delivering oversea were 4 taxa; Salix hallaisanensis, Aristolochia controrta, Clematis trichotoma and Chrysosplenium barbatum. The plant resources were 186 taxa of ornamental plant, 241 taxa of edible plant, 274 taxa of medicinal plant and 202 taxa of others.

• The Plant Pathology Journal
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• v.16 no.1
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• pp.36-42
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• 2000

The coat protein gene of iris severe mosaic potyvirus, which was isolated in Korea, ISMV-K, from iris plant was cloned and its nucleotide sequence was determined. The coat protein of the virus contained 252 amino acid residues, including five potential N-glyxosylation site motifs. The coat protein of ISMV-K has 99.1% and 98.4% sequence identities with those of the Netherlands isolate of ISMV (ISMV-Ne) form crocus for the nucleotide and amino acids, respectively. The coat protein of ISMV-K has 50.4% to 60.3% nucleotide sequence identities and 47.3% to 55.7% amino acid identities with those of other 21 potyviruses, indicating ISMV to be a distinct species of the genus. The coat protein of ISMV-K was closely related with bean yellow mosaic virus and clover yellow vein virus in the phylogenetic tree analysis among the potyviruses analyzed. ISMV was easily and reliably detected from virus-infected iris leaves by RT-PCR with a set of the virus-specific primers.

• The Plant Pathology Journal
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• v.28 no.4
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• pp.390-400
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• 2012

Eight potato-producing provinces of Iran were surveyed during the growing seasons of 2004-2006 to detect the presence of Tomato yellow fruit ring virus (TYFRV), a tentative species in the genus Tospovirus. A total of 1,957 potato leaf samples were collected from plants with tospovirus-like symptoms of chlorotic or necrotic spots, chlorosis and necrosis. The samples were tested by enzyme-linked immunosorbent assay using TYFRV-specific antibodies. Among those tested, 498 samples (25.4%) were found to be infected with the virus. The virus was detected in 72.4% of the potato fields in all provinces surveyed. Thirteen potato isolates of TYFRV were selected for further biological and molecular studies. Based on their reactions on Nicotiana tabacum plants, the isolates were separated into two groups, namely L (local infection) and N (systemic infection). The nucleotide sequences of the nucleoprotein (N) genes of the isolates were determined and compared with the homologous sequences in Genbank. No recombination evidence was found in the isolates using different recombination-detecting programs. In the phylogenetic tree, the potato isolates fell into two major groups: IRN-1 and IRN-2 corresponding to the two biologically separated groups. This study shows for the first time the biological and phylogenetic relationships of geographically distant TYFRV isolates from potatoes in the mid-Eurasian country of Iran.

• The Plant Pathology Journal
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• v.27 no.1
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• pp.37-43
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• 2011

Rice stripe virus (RSV) is one of serious epidemic pathogens for rice species grown in many Asian countries. Therefore, it is necessary to produce a diagnostic detection kit applicable in fields for RSV detection. In this study, RSV proteins that were derived from recombinant proteins and synthetic polypeptides as antigens were generated and were raised in rabbits for antiserum production. Among seven proteins in RSV, genes that code for NCP and NS3 proteins were cloned and subcloned into vector carrying His-tag protein and were expressed in E. coli. Of two recombinant proteins, only anti-NCP displayed stable hybridization signals in western blot analysis. Alternately, synthetic RSV polypeptides for CP, NCP, NS3 and NSvc4 we also generated and only antibodies against CP and NCP were very effective to detect RSV in both RSV infected rice and weed plants. However, antibodies against NS3 and NSvc4 showed weak specific bands as well as strong non-specific background due to the difference of viral proteins produced in the infected leaves. In summary, the antibodies generated against RSV proteins produced in this study will be useful for various assays such as for RSV diagnostic detection, immunoprecipitation, protein purification, and western blot analysis.

• Korean Journal of Agricultural and Forest Meteorology
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• v.13 no.3
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• pp.123-139
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• 2011

It is expected that identification and lists of $C_4$ plants in specific regions are useful not only for the ecological researches that are related to vegetation phenology and succession but also as an index of climate change. In this review, $C_4$ plants growing in South Korea were listed and their life forms were investigated. In addition, we discussed the influences that climatic change and the $C_4$ plants exerted on plant ecosystem. Photosynthetic pathway types ($C_3$ and $C_4$) for the plant species in South Korea were determined by reviewing the scientific literatures published between 1971 and 2010. Of the total 4476 species in 1123 genera and 197 families, 206 species (4.6%) in 84 genera (7.5%) and 21 families (10.7%) were identified as $C_4$ plants (including $C_3$-$C_4$ intermediate plants). Among the identified $C_4$ species, 53 species (25.7%) in 26 genera and 15 families were classified as Dicotyledoneae, while 153 species (74.3%) in 58 genera and 6 families were classified as Monocotyledoneae. The majority of the $C_4$ species belong to four families: Chenopodiaceae (15 species), Amaranthaceae (13 species), Gramineae (102 speceis) and Cyperaceae (45 species). With respect to life form composition of 206 $C_4$ species, Th-$R_5$-$D_4$-t was most dominant: 95 species (46.1%) were included in Th, 123 species (59.7%) in $R_5$, 179 species (86.9%) in $D_4$, and 122 species (59.2%) in t. The projected increase in temperature due to climate change may provide better conditions for the growth of $C_4$ plants. Such a result will have considerable impacts on the interspecific competition between $C_3$ and $C_4$ plants, the distribution of $C_4$ plants, plant phenology, and plant diversity.

• Journal of Plant Biotechnology
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• v.43 no.3
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• pp.311-316
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• 2016

The efficacy of plant breeding has been enhanced by application of molecular markers in population screening and selection. Pepper (Capsicum annuum L.) is a major staple crop that is economically important with worldwide distribution. It is valued for its spicy taste and medicinal effect. The aim of this study was to discover single nucleotide polymorphisms (SNPs), microsatellite markers information, and percentage sharing through orthologous analysis of pepper-specific pungency-related genes. Here, we report the results of transcriptome analysis and microsatellite markers for four pepper varieties that possess a pungency-related gene. Orthologous analyses was performed to identify species-specific pungency-related genes in pepper, Arabidopsis thaliana L., potato (Solanum tuberosum L.), and tomato (Solanum lycopersicum L.). Advancements in next-generation sequencing technologies enabled us to quickly and cost-effectively assemble and characterize genes to select molecular markers in various organisms, including pepper. We identified a total of 9762, 7302, 8596, and 6886 SNPs for the four pepper cultivars Blackcluster, Mandarine, Saengryeg 211, and Saengryeg 213, respectively. We used 454 GS-FLX pyrosequencing to identify microsatellite markers and tri-nucleotide repeats (54.4%), the most common repeats, followed by di-, hexa-, tetra-, and penta-nucleotide repeats. A total of 5156 (15.9%) pepper-specific pungency-related genes were discovered as a result of orthologous analysis.

• Journal of the Korean Society of Environmental Restoration Technology
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• v.17 no.2
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• pp.31-48
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• 2014

This study is carried out to offer the raw data for conservation and management of tidal flat ecosystem by surveying and analysing the flora distributed in Daesong tidal flat wetland, Ahnsan-si, Gyeonggi-do coast, Korea. The results of surveying the flora were recorded as 186 taxa including 45 families, 121 genera, 170 species, 14 varieties and 2 forms. The halophytes checked around this site were 20 taxa including Atriplex gmelinii, Salicornia europaea, Suaeda glauca, Suaeda japonica, Phragmites communis, Carex scabrifolia and so forth. Polygonum bellardii that species had ecological value was the specific plant by floristic region. The growth locations of halophytes were 11 taxa of upper, 4 taxa of high tide line and 5 taxa of lower. The naturalized plants were 42 taxa including Phytolacca americana, Chenopodium glaucum, Melilotus alba, Veronica persica, Bidens pilosa, Leptochloa fusca and so forth. Because Aster subulatusand Leptochloa fusca grew a upper tidal flat wetland, they had the characteristics of halophytes. The focuses on the management of Daesong wetland were halophytes and naturalized plants. Firstly, to maintain a halophytes communities, we will sow the halophytes seeds and plant the individuals. And In-Situ conservation was applied to Polygonum bellardii habitat. Secondly, to prevent the genesis of naturalized plant, we will don't disturb around the wetland environment. The invasive alien plant, Lactuca scariola, was removed by periodic monitoring and purification activity.

• Journal of the Korean Society of Environmental Restoration Technology
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• v.17 no.2
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• pp.93-108
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• 2014

The inventory list of wildlife species inhabiting or distributing in Gyeonggi Province was made by compiling species data from precedent surveys, 10 national level nature surveys, 1 survey that Gyeonggi-do conducted, and 46 local surveys presented in scientific journals. Total 2,913 wildlife species including 2,041 vascular plants, 39 mammals, 304 birds, 34 herptiles, 145 fish, and 350 benthic macro-invertebrates were listed in the inventory. It explains 47% of nationwide total species in vascular plants, 31.5% in mammals, 58.2% in birds, 65.4% in herptiles, 12.2% in fish. The total number of important species including endangered species, national monuments, national red lists, etc. was 628 species, accounting for 21.6% of all listed species in Gyeonggi Province. More than 90% of endangered bird species, almost half of endangered fish and herptile species were found in Gyeonggi Province. In particular, abundant bird diversity and inhabitation of many endangered bird species were identified in Gyeonggi Province. Species diversity was greater in the northern area adjacent to the Demilitarized Zone and the eastern forest area. The distribution of the important species such as national endangered species was more distinct in these areas, especially in Gapyeong and Yeoncheon Counties. The inventory list compiled in this study implicates the level of management for biological resources and can provide information for policy decisions regarding new survey sites, protection management of specific species and areas, management practices by spatial characteristics. It should be more compiled and updated with survey data to be utilized as basic indices for local biodiversity strategies and management of biological resources.