• 제목/요약/키워드: Species detection

검색결과 946건 처리시간 0.026초

Boron doped diamond RDE에 의한 혈액내의 serotonin의 전기화학적 선택적 검출 효과 (Selective electrochemical detection effect of serotonin in blood by using boron doped diamond rotating disk electrode)

  • 황진희;조은인;박수길
    • 한국전기전자재료학회:학술대회논문집
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    • 한국전기전자재료학회 2003년도 하계학술대회 논문집 Vol.4 No.2
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    • pp.930-933
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    • 2003
  • The electrochemical oxidation of ascorbic acid(AA), serotonin(StT) and epinephrine(EP) have been performed ae poly N,N-dimethylanliline(PDMA) film coated diamond electrode. This cationic polymer film is electrochemically deposited on boron-doped diamond electrode surface. Unlike the bard electrode, the polyaer film-coated diamond electrode can well separate the oxidation potential of AA by 330mV. Thus this electrode can be successfully used for the simultaneoud detection of both species. Increases in the concentration of AA donot affect the reponse of EP and ST.

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PCR-based detection of feline vector-borne pathogens in Daejeon

  • Kim, Tae-Hyung;Seo, Kyoung-Won;Song, Kun-Ho
    • 한국동물위생학회지
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    • 제41권4호
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    • pp.287-289
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    • 2018
  • This study was conducted to investigate the detection of various vector-borne pathogens in such cats. A total of 48 stray cats collected in Daejeon were included in this study. The total positive rate of hemotropic mycoplasmas and Babesia spp. was 25% and 4%, respectively. It is recommended that species-level classification of hemotropic mycoplasmas and Babesia spp. is needed and that a large-scale prevalence study of infectious agents in all the regions of South Korea be conducted.

Rapid and exact molecular identification of the PSP (paralytic shellfish poisoning) producing dinoflagellate genus Alexandrium

  • Kim, Choong-jae;Kim, Sook-Yang;Kim, Kui-Young;Kang, Young-Sil;Kim, Hak-Gyoon;Kim, Chang-Hoon
    • 한국양식학회:학술대회논문집
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    • 한국양식학회 2003년도 추계학술발표대회 논문요약집
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    • pp.132-133
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    • 2003
  • The marine dinoflagellate genus Alexandrium comprise PSP producing A. acatenella, A. angustitabuzatum, A. catenella, A. fundyense, A. minutum, A. ostenfezdii, A. tamiyavanichii and A. tamarense. In monitoring toxic Alexandrium, rapid and exact species identification is one of the significant prerequisite work, however we have suffered confusion of species definition in Alexandrium. To surmount this problem, we chose DNA probing, which has long been used as an alternative for conventional identification methods, primarily relying on morphological approaches using microscope in microbial field. Oligonucleotide DNA probes targeting rRNA or rDNA have been commonly used in diverse studies to detect and enumerate cells concerned as a culture-indetendent powerful tool. Despite of the massive literature on the HAB species containing Alexandrium, application of DNA probing for species identification and detection has been limited to a few documents. DNA probes of toxic A. tamarense, A. catenella and A. tamiyavanichii, and non-toxic A. affine, A. fraterculus, A. insuetum and A. pseudogonyaulax were designed from LSU rDNA D1-D2, and applied to whole cell-FISH. Each DNA probes reacted only the targeted Alexandrium cells with very high species-specificity within Alexandrium. The probes could detect each targeted cells obtained from the natural sea water samples without cross-reactivity. Labeling intensity varied in the growth stage, this showed that the contents of probe-targeted cellular rRNA decreased with reduced growth rate. Double probe TAMID2S1 achieved approximately two times higher fluorescent intensity than that with single probe TAMID2. This double probe did not cross-react with any kinds of microorganisms in the natural sea waters. Therefore we can say that in whole-cell FISH procedure this double DNA probe successfully labeled targeted A. tamiyavanichii without cross-reaction with congeners and diverse natural bio-communities.

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Molecular Characterization of Various Trichomonad Species Isolated from Humans and Related Mammals in Indonesia

  • Kamaruddin, Mudyawati;Tokoro, Masaharu;Rahman, Md. Moshiur;Arayama, Shunsuke;Hidayati, Anggi P.N.;Syafruddin, Din;Asih, Puji B.S.;Yoshikawa, Hisao;Kawahara, Ei
    • Parasites, Hosts and Diseases
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    • 제52권5호
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    • pp.471-478
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    • 2014
  • Trichomonad species inhabit a variety of vertebrate hosts; however, their potential zoonotic transmission has not been clearly addressed, especially with regard to human infection. Twenty-one strains of trichomonads isolated from humans (5 isolates), pigs (6 isolates), rodents (6 isolates), a water buffalo (1 isolate), a cow (1 isolate), a goat (1 isolate), and a dog (1 isolate) were collected in Indonesia and molecularly characterized. The DNA sequences of the partial 18S small subunit ribosomal RNA (rRNA) gene or 5.8S rRNA gene locus with its flanking regions (internal transcribed spacer region, ITS1 and ITS2) were identified in various trichomonads; Simplicimonas sp., Hexamastix mitis, and Hypotrichomonas sp. from rodents, and Tetratrichomonas sp. and Trichomonas sp. from pigs. All of these species were not detected in humans, whereas Pentatrichomonas hominis was identified in humans, pigs, the dog, the water buffalo, the cow, and the goat. Even when using the high-resolution gene locus of the ITS regions, all P. hominis strains were genetically identical; thus zoonotic transmission between humans and these closely related mammals may be occurring in the area investigated. The detection of Simplicimonas sp. in rodents (Rattus exulans) and P. hominis in water buffalo in this study revealed newly recognized host adaptations and suggested the existence of remaining unrevealed ranges of hosts in the trichomonad species.

남해 연안에 분포하는 해파리(Aurelia aurita, Cyanea nozakii)의 복수 개체에 의한 음향 표적강도 특성 (Acoustic Target Strength Characteristics of Two Species of Multiple Jellyfishes, Aurelia aurita and Cyanea nozakii, in the Southern Coast of Korea)

  • 강돈혁;김정훈;임선호
    • Ocean and Polar Research
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    • 제32권2호
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    • pp.113-122
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    • 2010
  • Understanding the abundance and distribution of massive jellyfish is necessary to forecast where or when their blooms will happen. The acoustic technique is one of the most useful methods of obtaining information if the acoustic characteristics of the targets are known. This study was conducted to determine the acoustic target strength (TS, dB) of two jellyfish species, Aurelia aurita and Cyanea nozakii, in the southern coast of Korea. For the ex situ measurements, 120, 200, and 420 kHz split beam transducers were used, and jellyfish with various bell lengths were arranged to prepare multiple jellyfish. Under 2 vertical individuals, the mean TS for multiple A. aurita at 120, 200, and 420 kHz was -72.7, -71.7, and -68.2 dB, respectively. In the case of 5 vertical individuals, the mean TS of the species was -71.3, -68.2, and -62.0 dB. Finally, the mean TS of C. nozakii at 120, 200, and 200 kHz was -62.0, -60.3, and -58.2 dB under 2 individuals and -58.1, -57.4, and -54.0 dB under 4 individuals, respectively. For both species, higher numbers of jellyfish resulted in a higher TS. In addition, higher frequencies were associated with a higher TS for the same jellyfish. These TS results for two species can be used as essential data for the acoustic detection of jellyfish in an open ocean or coastal area.

Drosophila melanogaster complex내의 유전적 유연관계에 관한 연구 (Genetic Relationship within the melanogaster Complex of the Genus Drosophila)

  • 최영현;이원호
    • 생명과학회지
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    • 제9권1호
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    • pp.69-75
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    • 1999
  • Genus Drosophila에서 melanogaster complex내의 4종에 대한 유연관계 해석을 위하여, insemination test에 의한 premating isolation, 잡종형성 여부에 의한 postmating isolation, 형태 형성에 관한 영향 및 종 분화 관련 유전자의 특징 등을 대상으로 조사하였다. 종내 교배에서는 insemination rate는 96∼99% 정도였고 종간 교배에서는 정역 교배간에 심한 변이를 보였으며 D. melanogaster 암컷은 타종 수컷과의 교배에서 전반적 성공률이 높으며 D. sechellia 수컷은 타종 암컷과의 교배에서 비교적 높은 교배 성공률을 보였다. 종간 잡종 형성에서는 특히 simulans, mauritiana 및 sechellia 사이에서 임성이 완전한 암컷과 불임의 수컷이 형성되어 이들 3종이 더욱 근연임을 시사하고 있다. sex comb과 genital arch에 대한 잡종의 형태 형성에 관한 영향은 대부분이 polygene에 의하여 조절되고 있음을 알 수 있었다. D. melanogaster와 simulans에 있어서 분화 관련 유전자로 추정되는 잡종의 온도 감수적 생존도는 주로 simu-lans의 X 염색체상의 유전자에 의하여 조절되고 있음이 분석되었다.

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고사목에서 분리된 선충과 곤충의 종류 및 솔수염하늘소 부위별 소나무재선충 밀도조사 (Nematodes and Insects Associated with Dead Trees, and Pine Wood Nematode Detection from the Part of Monochamus alternatus)

  • 이상명;추호렬;박남창;문일성;김준범
    • 한국응용곤충학회지
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    • 제29권1호
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    • pp.14-19
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    • 1990
  • 부산, 경남, 경북, 전남, 전북 22개 지역 19수종 238본의 고사목에서 1989년 4월부터 9월까지 선충류와 곤충류를 조사한 결과, 소나무 재선충은 부산지역에서만 검출되었으며, 어리소나무 재선충은 진주와 진해에서 분포가 확인되었다. 고사목에서 분리.동정된 선충류는 9속 13종이었으며 6속은 미동정되었다. 동정된 선충 중 Diplogasteroides dimidius, Rhabdontolaimus adephagus, R.janae, Mikoletzkya diluta, M. ruminis, m. langcauda, Parasitorhabditis hylurgi, Panagrolaimus concolor, Panagrodontus dentatus, Prothallonema intermedium, Macrolaimus canadensis는 우리나라 미기록종이다. 한편, 고산목에서 채집된 곤충은 5목 9과 25속 27종이었는데 딱정벌레목이 3과 19속 22종으로 가장 많았다. 그중 나무종이 10속 12종으로 빈번히 채집되었으며, Hypothenemus eruditus가 꽃싸리, 싸리, 조록싸리, 만리화, 닥나무에서 채집되어 새 기주로 추가되었다. 소나무 재선충의 매개충인 솔수염하늘소는 복부에서의 선충 검출수가 가장 많았으며, 성충 한마리당 선충 보유수는 최대 127,535마리, 최소 2,616마리, 정균 42,817마리였다.

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The Determination of the Partial 28S Ribosomal DNA Sequences and Rapid Detection of Phellinus linteus and Related species

  • Park, Hyung-Sik;Kim, Gi-Young;Nam, Byung-Hyouk;Lee, Sang-Joon;Lee, Jae-Dong
    • Mycobiology
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    • 제30권2호
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    • pp.82-87
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    • 2002
  • Species of Phellinus were known to harmful fungi causing white pocket rot and severe plant disease such as canker or heartrot in living trees in the West, but some species have been used to traditional medicines in the Orient for a long time. In this study the partial D1-D2 nucleotide sequences of 28S ribosomal DNA from 13 Phellinus strains were determined and compared with the sequences of 21 strains obtained from GenBank database. According to the neighbor-joining(NJ) method comparing the sequence data the phylogenetic tree was constructed. The phylogenetic tree displayed the presence of four groups. Group I includes P. ferreus, P. gilvus and P. johnsonianus, Group II contains P. laevigatus, P. conchatus and P. tremulae, Group III possesses P. linteus, P. weirianus, P. baumii, P. rhabarbarinus and P. igniarius, and Group IV comprises P. pini, P. chrysoloma. P. linteus and P. baumii, which were used mainly in traditional medicine, belong to the same group, but exactly speaking both were split into two different subgroups. To detect P. linteus only, we developed the PCR primer, D12HR. The primer showed the specific amplification of P linteus, which is permitted to medicinal mushroom in the East. The results make a potential to be incorporated in a PCR identification system that could be used for the rapid identification of this species from its related species, P. linteus especially.

HPLC-AFS를 이용한 해산물 중 비소 화학종 분리정량 (Quantification of Arsenic Species in Some Seafood by HPLC-AFS)

  • 정승우;이채혁;이종화;장봉기
    • 한국환경보건학회지
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    • 제47권5호
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    • pp.496-503
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    • 2021
  • Background: Considering the expenses of and difficulties in arsenic speciation by high performance liquid chromatography-inductively coupled plasma-mass spectrometry (HPLC-ICP-MS), alternative measurement methods should be useful, especially for large-scale research and projects. Objectives: A measurement method was developed for arsenic speciation using HPLC-atomic fluorescence spectrometry (HPLC-AFS) as an alternative to HPLC-ICP-MS. Methods: Total arsenic and toxic arsenic species in some seafoods were determined by atomic absorption spectrometry coupled with hydride vapor generation (AAS-HVG) and HPLC-AFS, respectively. Recovery rate of arsenic species in seafood was evaluated by ultra sonication, microwave and enzyme (pepsin) for the optimal extraction method. Results: Limits of detection of HPLC-AFS for As3+, dimethylarsinate (DMA), monomethylarsonate (MMA) and As5+ were 0.39, 0.53, 0.60 and 0.64 ㎍/L, respectively. The average accuracy ranged from 97.5 to 108.7%, and the coefficient of variation was in the range of 1.2~16.7%. As3+, DMA, MMA and As5+ were detected in kelp, the sum of toxic arsenic in kelp was 40.4 mg/kg. As3+, DMA, MMA and As5+ were not detected in shrimp and squid, but total arsenic (iAS and oAS) content in shrimp and squid analyzed by AAS-HVG were 18.1 and 24.7 mg/kg, respectively. Conclusions: HPLC-AFS was recommendable for the quantitative analysis method of arsenic species. As toxic arsenic species are detected in seaweeds, further researches are needed for the contribution degree of seafood in arsenic exposure.

A New Analytical Method for Erythromycin in Fish by Liquid Chromatography/Tandem Mass Spectrometry

  • Park, Mi-Jung;Park, Mi-Seon;Lee, Tae-Seek;Shin, Il-Shik
    • Food Science and Biotechnology
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    • 제17권3호
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    • pp.508-513
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    • 2008
  • Erythromycin has been used to treat Streptococosis, Edwardsiel1osis, Vibriosis, Bacterial enteritis in the cultured fish. In this study, a rapid and effective erythromycin analysis method with new sample treatment protocol and liquid chromatography/tandem mass spectrometry (LC/MS/MS) system for fish products was developed. For the erythromycin extraction from fish muscle, the solvent mixture composed of 0.2% meta-phosphoric acid and methanol (6:4) showed good recovery rate, and the optimum extraction solvent volume was 20 mL. Erythromycin detection using LC/MS/MS were carried out under electro spray ionization (ESI) positive condition and erythromycin mass value 576.2 and 157.9. And the detection limit of the established method was 0.005 mg/kg in fish products. The recovery rate of the developed method applied to the fish species were as following, olive flounder, $87.6{\pm}5.0%$; black rockfish, $87.2{\pm}6.4%$; eel, $85.2{\pm}4.8%$; and rainbow trout, $86.0{\pm}6.2%$. In the established method in this study, the correlation of coefficient values ($R^2$) of erythromycin calibration curve (n=11) was 0.9998.