• 제목/요약/키워드: Species detection

검색결과 946건 처리시간 0.027초

Rapid and Accurate Species-Specific Detection of Phytophthora infestans Through Analysis of ITS Regions in Its rDNA

  • Kim, Kyoung-Su;Lee, Youn-Su
    • Journal of Microbiology and Biotechnology
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    • 제10권5호
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    • pp.651-655
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    • 2000
  • Polymerase chain reaction (PCR) was used to specifically detect Phytophthora infestans by analyzing the sequences of the ribosomal internal transcribed spacer regions (ITS) in the rDNA of the Phytophthora species. Based on the sequence data, PISP-1 together with the ITS3 primer were used to detect p. infestans. A single ca. 450 bp segment was observed in P. infestans, but not in the other fungal or bacterial isolates. Two factors, the annealing temperature and template DNA quantity, were investigated to determine the optimal conditions. Using these species-specific primers, a unique band was obtained within annealing temperatures of $55^{\circ}C$-$61^{\circ}C$ and template DNA levels of 10 pg-100 ng.

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한국 미기록 귀화식물: 마늘냉이(십자화과) (First record of invasive species Alliaria petiolata (M. Bieb.) Cavara & Grande (Brassicaceae) in Korea)

  • 조성현;김영동
    • 식물분류학회지
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    • 제42권4호
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    • pp.278-281
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    • 2012
  • 마늘냉이(Alliaria petiolata (M. Bieb.) Cavara & Grande)는 유럽과 서남아시아 원산의 십자화과 침입식물로서 현재 북미의 삼림 하부를 교란시키고 있는 것으로 알려져 있다. 이 종이 강원도 삼척시의 길가 숲을 따라 침입하여 우리나라에도 자라고 있는 것으로 확인되었다. 국내 확산을 막기 위한 기초 정보를 제공하기 위해 이 종에 대한 확인 결과를 보고하고자 한다.

Analysis of arsenic in contaminated soil SRM by two extraction methods: Ultrasonic extraction method and Microwave extraction method

  • Kim, Youn-Tae;Yoon, Hyeon;Shin, Mi-Young;Yoon, Cheol-Ho;Woo, Nam-Chil
    • 한국지하수토양환경학회:학술대회논문집
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    • 한국지하수토양환경학회 2004년도 임시총회 및 추계학술발표회
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    • pp.227-230
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    • 2004
  • Two extraction techniques, Ultrasonic and Microwave extraction method, were tested for the determination of arsenic in contaminated soil SRM (Montana Soil). The extraction mixture was prepared by mixing 1 M ortho-phosphoric acid and 0.1 M ascorbic acid. This extractant was known to preserve arsenic species. The appropriate extraction time was 10 min to 20 min and the recovery rate was about 80%. A coupled system, SPE-HG-ICP-AES, was used for the determination of inorganic arsenic species. The detection limit was around 2 $\mu\textrm{g}$/1 and the linearity of calibration curve was better than $R^2$=0.99.

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견사 Fibroin 중의 Hydroxyproline정량에 대한 보고 (Hydroxyproline determination in silk fibroin)

  • 최병희;이춘영;김한수
    • 한국잠사곤충학회지
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    • 제5권
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    • pp.53-55
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    • 1965
  • 본 보고는 견사 fibroin 중의 Hydroxyproline 정량결과이며 다음의 결과를 얻었다. 1. 일부품종 견사 fibroin 중의 Hydroxyproline 이 25∼75 p.p.m 함유되고 있었다. 2. 본 아미노산 함유량은 원종견보다 교잡종견에 많이 함유되고 있었다. 3. 본 아미노산 검출로 견사 fibroin의 아미노산 종류는 18종에서 19종으로 되였다.

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파장변조 광흡수 분광법을 이용한 농도 계측 기법 (Species Concentration Measurement Technique Using Wavelength Modulation Absorption Spectroscopy)

  • 안재현;김용모
    • 한국분무공학회지
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    • 제9권4호
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    • pp.67-76
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    • 2004
  • Diode laser absorption sensors are advantageous because they may provide fast, sensitive, absolute, and selective measurements of species concentration. These systems are very attractive for practical applications owing to its compactness, reasonable cost, robustness, and ease of use. In addition, diode lasers we fiber-optic compatible and thus enable simultaneous measurements of multiple species along a line-of-sight. Recent advances of room-temperature, near-IR and visible diode laser sources for telecommunication, optical data storage applications make it possible to be applied for combustion diagnostics based on diode laser absorption spectroscopy. Therefore, combined with fiber-optics and high sensitive detection strategies, compact and portable sensor systems are now appearing for variety of applications. The objectives of this research are to develop new gas sensing system and to verify feasibility of this system. Wavelength modulation spectroscopy has been demonstrated in these experiments and has a bright prospect to this diode laser system.

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Quantitative Analysis of chiisanoside in Acanthopanax Species by HPLC

  • Lee, Jeong-Min;Kim, Hye-Min;Lee, Sang-Hyun
    • Natural Product Sciences
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    • 제13권2호
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    • pp.148-151
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    • 2007
  • High performance liquid chromatography (HPLC) was used for the analysis of chiisanoside in Acanthopanax species. A reverse-phase system using a gradient of H$_2$O and acetonitrile as the mobile phase was developed and a wavelength of detection was at 210 nm. The analysis was successfully carried out for 30 min. Chiisanoside was measured in the fruit, stem and root of A. sessiliflorus, A. koreanus, A. divaricatus and A. senticosus.

Detection of Extracellular Enzyme Activities in Various Fusarium spp

  • Kwon, Hyuk-Woo;Yoon, Ji-Hwan;Kim, Seong-Hwan;Hong, Seung-Beom;Cheon, Young-Ah;Ko, Seung-Ju
    • Mycobiology
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    • 제35권3호
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    • pp.162-165
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    • 2007
  • Thirty seven species of Fusarium were evaluated for their ability of producing extracellular enzymes using chromogenic medium containing substrates such as starch, cellobiose, CM-cellulose, xylan, and pectin. Among the tested species Fusarium mesoamericanum, F. graminearum, F. asiaticum, and F. acuminatum showed high ${\beta}$-glucosidase acitivity. Xylanase activity was strongly detected in F. proliferatum and F. oxysporum. Strong pectinase activity was also found in F. oxysporum and F. proliferatum. Amylase activity was apparent in F. oxysporum. No clear activity in cellulase was found from all the Fusarium species tested.

Distribution of ddr (DNA damage response) Genes among Species of Deinococcus

  • Lim, Sangyong;Jung, Sunwook;Joe, Minho;Kim, Dongho
    • 방사선산업학회지
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    • 제4권3호
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    • pp.289-295
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    • 2010
  • The bacterium Deinococcus radiodurans is one of the most resistant organisms to the effects of ionizing radiation and other DNA-damaging agents. In this study, distributions of 10 ddr (DNA damage response) genes were investigated in 8 species of Deinococcus by polymerase chain reaction (PCR). We have compared the sequences of ddr genes of D. radiodurans, D. geothermalis and D. deserti, and selected primers which are suitable for the detection of ddr in different species of Deinococcus. A sequence homology search and PCR assay showed that ddrO, which encodes a global regulator of the radiation-desiccation response, was most well conserved in the Deinococcus lineage.

Developing species-specific quantitative real-time polymerase chain reaction primers for detecting Lautropia mirabilis

  • Park, Soon-Nang;Kook, Joong-Ki
    • International Journal of Oral Biology
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    • 제46권3호
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    • pp.140-145
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    • 2021
  • This study aimed to develop Lautropia mirabilis-specific quantitative real-time polymerase chain reaction (qPCR) primers based on the sequence of DNA-directed RNA polymerase subunit beta gene. The PrimerSelect program was used in designing of the qPCR primers, RTLam-F4 and RTLam-R3. The specificity of the qPCR primers were performed by conventional PCR with 37 strains of 37 oral bacterial species, including L. mirabilis. The sensitivity of the primers was determined by qPCR with the serial dilution of purified genomic DNA of L. mirabilis KCOM 3484, ranged from 4 ng to 4 fg. The data showed that the qPCR primers could detect only L. mirabilis strains and as little as 40 fg of genome DNA of L. mirabilis KCOM 3484. These results indicate that this qPCR primer pair (RTLam-F4/RTLam-R3) may be useful for species-specific detection of L. mirabilis in epidemiological studies of oral bacterial infectious diseases such as periodontal disease.

생물의약품 제조공정에서 마이코플라스마 정량 검출을 위한 TaqMan Probe Real-Time PCR (TaqMan Probe Real-Time PCR for Quantitative Detection of Mycoplasma during Manufacture of Biologics)

  • 이재일;김인섭
    • KSBB Journal
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    • 제29권5호
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    • pp.361-371
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    • 2014
  • Mycoplasma is well recognized as one of the most prevalent and serious microbial contaminants of biologic manufacturing processes. Conventional methods for mycoplasma testing, direct culture method and indirect indicator cell culture method, are lengthy, costly and less sensitive to noncultivable species. In this report, we describe a new TaqMan probe-based real-time PCR method for rapid and quantitative detection of mycoplasma contamination during manufacture of biologics. Universal mycoplasma primers were used for mycoplasma PCR and mycoplasma DNA was quantified by use of a specific TaqMan probe. Specificity, sensitivity, and robustness of the real-time PCR method was validated according to the European Pharmacopoeia. The validation results met required criteria to justify its use as a replacement for the culture method. The established real-time PCR assay was successfully applied to the detection of mycoplasma from human keratinocyte and mesenchymal stem cell as well as Vero cell lines artificially infected with mycoplasma. The overall results indicated that this rapid, specific, sensitive, and robust assay can be reliably used for quantitative detection of mycoplasma contamination during manufacture of biologics.