• Journal of Microbiology and Biotechnology
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• v.20 no.10
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• pp.1386-1392
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• 2010

A bacterial strain designated GR5$^T$, previously isolated from a freshwater culture pond in Taiwan while screening for bacteria for antimicrobial compounds, was characterized using a polyphasic taxonomic approach. Strain GR5$^T$ was found to be Gram-negative, aerobic, greenish-yellow colored, rod-shaped, and motile by means of a single polar flagellum. Growth occurred at $10-40^{\circ}C$ (optimum, $35^{\circ}C$), pH 7.0-8.0 (optimum pH 8.0), and with 0-2.0% NaCl (optimum, 0.5-1.0%). The major fatty acids were $C_{16:1}{\omega}7c$(36.3%), $C_{16:0}$(16.6%), $C_{12:0}$ 3-OH (12.5%), and $C_{18:1}{\omega}7c$(9.1%). The major respiratory quinone was Q-8, and the DNA G+C content of the genomic DNA was 51.9 mol%. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain GR5$^T$ belongs to the genus Rheinheimera, where its most closely related neighbors are Rheinheimera texasensis A62-14B$^T$ and Rheinheimera tangshanensis JA3-B52$^T$ with sequence similarities of 98.1% and 97.5%, respectively, and the sequence similarities to any other recognized species within Gammaproteobacteria are less than 96.5%. The mean level of DNA-DNA relatedness between strain GR5$^T$ and R. texasensis A62-14B$^T$, the strain most closely related to the isolate, was $26.5{\pm}7.6%$. Therefore, based on the phylogenetic and phenotypic data, strain GR5$^T$ should be classified as a novel species, for which the name Rheinheimera aquatica sp. nov. is proposed. The type strain is GR5$^T$ (=BCRC 80081$^T$=LMG 25379$^T$).

• Korean Journal of Plant Taxonomy
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• v.40 no.4
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• pp.218-225
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• 2010

A total of ten unrecorded liverwort species in the Hepaticae flora of Korea were collected on Mt. Deogyu (1,614 m). The ten species are Tetralophozia filiformis (Steph.) Urmi., Herbertus buchii $Jusl{\acute{e}n$, Bazzania japonica (Sande Lac.) Lindb., Cephaloziella hampeana (Nees) Schiffner ex Loeske., Jungermannia japonica Amak., Marsupella alpina (Gott. ex Husn.) Bernet., Pedinophyllum interruptum (Nees) Kaal., Frullania polyptera Tayl., Jubula hutchinsiae ssp. javanica (Steph.) Verd., and Marchantia polymorpha ssp. montivagans Bischl. and Boisselier-Dubayle. They are distributed near streams and/or at the top of a ridge on Mt. Deogyu.

• Korean journal of applied entomology
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• v.31 no.4
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• pp.416-426
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• 1992

A new species of Xiphinemella is described and illustrated from soil around the roots of larch in Korea. Xiphinemella maiensis n. sp. has stylet length of 63-68$\mu\textrm{m}$, body length of 2.5-3.2 mm, and vulva position of 49-50%. It differs from X. esseri in more posteriorly positioned vulva (42-47% in X. esseri), shorter stylet (72-75$\mu\textrm{m}$ in X. esseri), and more anteriorly located guide ring (25-27 vs. 35-38$\mu\textrm{m}$). It also differs from X. ornata in having longer body (1.94-2.32 mm in X. ornata) and shorter stylet (82-92$\mu\textrm{m}$ in X. ornata). A key to species of the genus is provided. Xiphnema brevicolle, X. diffusum, X. chambersi, and X. insigne are firstly recorded from Korea.

• Archives of Pharmacal Research
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• v.19 no.2
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• pp.153-159
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• 1996

A new streptothricin family antibiotic producing Streptomyces spp. SNUS 8810-111 was isolated from a soil sample. Study of its morphological and physiological characters indicated that the antibiotic producing organism was a Streptomyces spp. Taxonomical studies suggested that the organism might belong to the genus streptomyces gougeroti. The organism produced antibiotics most in calcium carbonate-tryptic soy broth. The active principles were recovered from the broth with a cation exchange resin and eluted from the resin with HCI. Cellulose column chromatography gave two active principles.$^1H-^1H$ Homo-COSY study on the first compound revealed four structural components. Total hydrolysis of the antibiotic with HCI allowed isolation of $\beta-lysine$. From these data the antibiotic was found to be streptothricin D. The other compound showed one additional signal in the .$^1H$NMR and the $^{13}C$ NMR spectra. The signal was from a methyl group attached to a nitrogen atom. Comparison of the NMR signals with those of streptothricin D suggested that the compound was N-methyl-streptothricin D which was a new compound in the family of streptothricin antibiotics.

• Parasites, Hosts and Diseases
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• v.42 no.3
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• pp.93-119
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• 2004

Acanthamoeba and Naegleria are widely distributed in fresh water, soil and dust throughout the world, and cause meningoencephalitis or keratoconjunctivitis in humans and other mammals. Korean isolates, namely, Naegleria sp. YM-1 and Acanthamoeba sp. YM-2, YM-3, YM-4, YM-5, YM-6 and YM-7, were collected from sewage, water puddles, a storage reservoir, the gills of a fresh water fish, and by corneal washing. These isolates were categorized into three groups based on the mortalities of infected mice namely, highly virulent (YM-4), moderately virulent (YM-2, YM-5 and YM-7) and nonpathogenic (YM-3). In addition, a new species of Acanthamoeba was isolated from a freshwater fish in Korea and tentatively named Korean isolate YM-4. The morphologic characters of its cysts were similar to those of A. culbertsoni and A. royreba, which were previously designated as Acanthamoeba group III. Based on experimentally infected mouse mortality, Acanthamoeba YM-4 was highly virulent. The isoenzymes profile of Acanthamoeba YM-4 was similar to that of A. royreba. Moreover, an anti-Acanthamoeba YM-4 monoclonal anti-body reacted only with Acanthamoeba YM-4, and not with A. culbertsoni. Random amplified polymorphic DNA marker analysis and RFLP analysis of mitochondrial DNA and of a 188 small subunit ribosomal RNA, placed Acanthamoeba YM-4 in a separate cluster based on phylogenic distances. Thus Acanthamoeba YM-4 was identified as a new species, and assigned Acanthamoeba sohi. Up to the year 2002 in Korea, two clinical cases were found to be infected with Acanthamoeba spp. These patients died of meningoencephalitis. In addition, one case of Acanthamoeba pneumonia with an immunodeficient status was reported and Acanthamoeba was detected in several cases of chronic relapsing corneal ulcer, chronic conjunctivitis, and keratitis.

• Journal of Species Research
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• v.8 no.2
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• pp.161-175
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• 2019

During a comprehensive investigation of indigenous prokaryotic species in Korea, a total of 46 bacterial strains assigned to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria, and Epsilonproteobacteria were isolated from a diversity of habitats including freshwater, seawater, brackish water, ginseng soil, plant roots, natural caves, and tidal flats. Based on their high 16S rRNA gene sequence similarities (>98.7%) and formation of strongly-supported phylogenetic clades with the closest type species, each strain was assigned to an independent, predefined bacterial species. Since there were no published or official reports regarding the isolation of these 46 species in Korea, here we report them as new species to Korea: 34 species in 14 families in the five orders of Alphaproteobacteria, 10 species in five families in the three orders of Betaproteobacteria, one species of Deltaproteobacteria and one species of Epsilonproteobacteria. Gram reaction, colony and cell morphology, basic biochemical characteristics, isolation source, and strain IDs are described in the species description section.

• Journal of Microbiology and Biotechnology
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• v.33 no.6
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• pp.753-759
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• 2023

The genus Paenibacillus contains a variety of biologically active compounds that have potential applications in a range of fields, including medicine, agriculture, and livestock, playing an important role in the health and economy of society. Our study focused on the bacterium SS4^T (KCTC 43402^T = GDMCC 1.3498^T), which was characterized using a polyphasic taxonomic approach. This strain was analyzed using antiSMASH, BAGEL4, and PRISM to predict the secondary metabolites. Lassopeptide clusters were found using all three analysis methods, with the possibility of secretion. Additionally, PRISM found three biosynthetic gene clusters (BGC) and predicted the structure of the product. Genome analysis indicated that glucoamylase is present in SS4^T. 16S rRNA sequence analysis showed that strain SS4^T most closely resembled Paenibacillus marchantiophytorum DSM 29850^T (98.22%), Paenibacillus nebraskensis JJ-59^T (98.19%), and Paenibacillus aceris KCTC 13870^T (98.08%). Analysis of the 16S rRNA gene sequences and Type Strain Genome Server (TYGS) analysis revealed that SS4^T belongs to the genus Paenibacillus based on the results of the phylogenetic analysis. As a result of the matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry (MALDI-TOF/MS) results, SS4^T was determined to belong to the genus Paenibacillus. Comparing P. marchantiophytorum DSM 29850^T with average nucleotide identity (ANI 78.97%) and digital DNA-DNA hybridization (dDDH 23%) revealed values that were all less than the threshold for bacterial species differentiation. The results of this study suggest that strain SS4^T can be classified as a Paenibacillus andongensis species and is a novel member of the genus Paenibacillus.

• Weed & Turfgrass Science
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• v.2 no.4
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• pp.413-420
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• 2013

The climate change affects the growth and development of weeds as well as the outbreak of weeds. Especially, the occurrences of problematic paddy weeds due to climate change might cause the difficulties in weed control. This study therefore, investigated the current dominance and distribution of paddy weeds. As a result of the study on paddy weeds in northern Gyeonggi-do, there were total of 65 taxonomy groups including 23 family, 41 genus, 57 species, 7 subspecies and 1 variety. Among all the plants, 46 species were annual plants and 16 were perennial plants. Echinochloa crus-galli was the highest in importance analysis and the followings were in order of Ludwigia prostrate and Lemna paucicostata. The similarity of different paddy weeds in different regions observed through TWINSPAN analysis was distinguished by Fimbristylis miliacea, Rotala indica and Cyperus flaccidus. Regional differences shown in CCA analysis using weed species and soil environment revealed that Gimpo-si and Namyangju-si has difference soil and weeds, which are features that distinguished them from other regions. In northern Gyeonggi-do the result of paddy weed research showed the interregional difference not in dominant weeds but in distribution species.

• Korean journal of applied entomology
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• v.40 no.4
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• pp.277-294
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• 2001

Four new and two known species of soil nematodes belonging the order Dorylaimida are described and illustrated. Discolaimium gyeongiens n. sp. is 1.6~1.7 mm long, c=37~41, odontostyle 19~21$\mu\textrm{m}$ long and is characterized by having wider lip region and very short prerectum. Aporcelaimellus donghwaens n. sp. is 2.8~2.9mm long, c=40.0~4.5, odontostyle 19~20$\mu\textrm{m}$ long and is characterized by possessing shorter odontophore, presence of cardiac disc and conoid tail. Labronema korandus n. sp. is 2.2~2.3 mm long, c=68~81, odontostyle 27~28$\mu\textrm{m}$, spicule 61$\mu\textrm{m}$ long and is characterized by having continuous lip region, circular vulva and cylindrical tail. Zalophidera longus n. sp. is 4.1~4.4mm long, c=107~130, spear 80~93$\mu\textrm{m}$ long and is characterized by large sized body, spear and spear extension. Discolaimoides bulbiferous and Diphtherophora communis were reported here for the first time in Korea.

• Korean Journal of Plant Taxonomy
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• v.38 no.4
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• pp.573-582
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• 2008

We report a newly found natural habitat of Abeliophyllum distichum in mountainous slope range of Yeongdong-gun, Chungbuk Province. Abeliophyllum distichum Nakai is one of the Korean monotypic endemic species. Natural growth habitats of this species have been recorded from seven sites up to now, and all of the natural habitats are located in middle (Chungbuk Prov.) and middle west (Jeonbuk Prov.) parts of South Korea. Among the previously recorded seven natural habitats, six sites have been designated as Korean national monuments and protected with in situ conservation. New natural habitat of A. distichum is located on northwest slope of stiff hillock area beside the small stream, Seolgye-ri, Yeongdong-eup, Yeongdong-gun, Chungbuk Province. Total growing area is nearly $3,000 m^2$. It is 10-25 cm in soil depth and pH 5.0-6.5 in soil acidity in that area. And many of A. distichum are clustered with 2-5 individuals extended by stoloniferous asexual reproduction. And the total numbers of A. distichum are about 700 individuals with only typical white flowers, and the ratio between pin type and thrum type is 37% and 63%, respectively. The huge population of A. distichum is growing with Quercus mongolica-Fraxinus rhynchophylla association in a mixed forest, and it shows high affinity with Stephanandra incisa, Ligustrum obtusifolium, Euonymus alatus for. ciliatodentatus, and Smilax sieboldi.