• Title/Summary/Keyword: Soil residue

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Molecular and Biochemical Characterization of a Novel Intracellular Low-Temperature-Active Xylanase

  • Zhou, Junpei;Dong, Yanyan;Tang, Xianghua;Li, Junjun;Xu, Bo;Wu, Qian;Gao, Yajie;Pan, Lu;Huang, Zunxi
    • Journal of Microbiology and Biotechnology
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    • v.22 no.4
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    • pp.501-509
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    • 2012
  • A 990 bp full-length gene (xynAHJ2) encoding a 329-residue polypeptide (XynAHJ2) with a calculated mass of 38.4 kDa was cloned from Bacillus sp. HJ2 harbored in a saline soil. XynAHJ2 showed no signal peptide, distinct amino acid stretches of glycoside hydrolase (GH) family 10 intracellular endoxylanases, and the highest amino acid sequence identity of 65.3% with the identified GH 10 intracellular mesophilic endoxylanase iM-KRICT PX1-Ps from Paenibacillus sp. HPL-001 (ACJ06666). The recombinant enzyme (rXynAHJ2) was expressed in Escherichia coli and displayed the typical characteristics of low-temperature-active enzyme (exhibiting optimum activity at $35^{\circ}C$, 62% at $20^{\circ}C$, and 38% at $10^{\circ}C$; thermolability at ${\geq}45^{\circ}C$). Compared with the reported GH 10 low-temperature-active endoxylanases, which are all extracellular, rXynAHJ2 showed low amino acid sequence identities (<45%), low homology (different phylogenetic cluster), and difference of structure (decreased amount of total accessible surface area and exposed nonpolar accessible surface area). Compared with the reported GH 10 intracellular endoxylanases, which are all mesophilic and thermophilic, rXynAHJ2 has decreased numbers of arginine residues and salt bridges, and showed resistance to $Ni^{2+}$, $Ca^{2+}$, or EDTA at 10 mM final concentration. The above mechanism of structural adaptation for low-temperature activity of intracellular endoxylanase rXynAHJ2 is different from that of GH 10 extracellular low-temperature-active endoxylanases. This is the first report of the molecular and biochemical characterizations of a novel intracellular low-temperature-active xylanase.

Studies on the Runoff and Soil Loss from Small Agricultural Watersheds with different treatment near Lincoln, Nebraska (처리를 달리한 소농업유역의 유출과 토양유실에 관한 연구 -네브라스카주 링컨 지방을 중심으로-)

  • ;Howard D. Wittmuss;Jos
    • Magazine of the Korean Society of Agricultural Engineers
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    • v.23 no.1
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    • pp.49-63
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    • 1981
  • 본 연구는 3개의 서로 다른 농지보전처리를 가진 시험구 및 테라스처리가 없는 목초용 Bromegrass 시험구에 있어서의 강우, 유출현상과 토양유실 관계를 규명함으로써 합리적인 농지보전 대책과 작부체계를 제시코저 하는데 그 목적이 있다. 강우, 유출 및 토양유실에 관한 분석고찰은 3개의 농지보전 시험구에서는 5년간(1972-1976년)의 자료를 그리고 Bromegrass 목초시험구에서는 3년간(1972-1974년)의 자료를 대상으로 하였다. 3개의 농지보전처리구는 첫째로 Non-terrace에 추경 춘조파형식의 관행법에 의한 비처리구와 둘째로 급역구배 테라스를 가진 초생수로에 가을 수확시 crop residue를 남겨두고 봄에 경작조파하는 Till plant system을 가진 초생수로구 그리고 마지막으로 지하배수와 함께 역구배 Terrace를 구비한 조파의 Till plant system 을 채용한 배수구를 나누어진다. Bromegrass 처리구는 Terrace나 기타 농지보전책이 없는 목초용 시험구이다. 이상의 연구에서 얻어진 결과를 요약하면 다음과 같다. 1. 시험기간대의 평균강수량은 네브라스카 링컨 지방의 76년간의 평균치, 728mm보다 66mm가 적은 662mm이였고 1974년과 1975년은 평균치보다. 300mm나 적은 극히 건조한 해 이였으며 1972년과 1976년은 거의 평균강수량에 가까웠고 1973년만은 평균치보다. 240mm나 더 많은 다우년 이었다. 2. 관행의 작부체계를 가진 비처리구에서의 연평균 유출고(2.44cm)는 역구배의 Terrace를 가지고 Till plant system을 채택한 초생수로구의 유출고(2.42cm)와 거의 유사하나 치였다. 3. 배수처리구로부터의 유출은 3개의 농지보전 처리구 중에서 5년간의 평균치가 1.57cm/year로 초생수로구와 비처리구의 유출보다 35%나 적은 가장 낮은 결과를 나타내었다. 4. Bromegrass 목초처리구에서의 유출은 방목정도에 따라서 영향되었다. 1972년의 무방축시 유출은 다른 3개 추리구로 부터의 유출으 7 내지 19%내인 0.07cm 정도였으나 1973년과 1974년의 방축년에는 조차 3개 처리구(3.4-5.18cm)에 필적되는 연평균 4.16cm로 나타났다. 5. 전체 시험구로부터으 연평균 토양유실량은 Sharpsburg 점질양토에 대한 S.C.S 한계허용치 10ton/ha/year 이내로 나타났다. 비처리구에서의 토양유실량은 평균 2.56ton/ha/year로 높게 나타난 반면 3개의 서로 다른 추리구인 비수구, 초생수로구 및 Bromegrass구에서는 각각 0.152, 0.192 및 0.290ton/ha/year로 낮은 결과를 가져왔다. 6. 평균 침전량에 대한 L.S.D. 검정 걸과 전시험구중 비처리구가 고도의 유의차를 나타낸 반면 비수구, 초생수로구 및 Bromegrass 목초구 간에는 아무런 유의차가 인정되지 않았다. 7. 농지보전 처리구인 배수구와 초생수로구는 비처리구에 비해 낮은 침두 유출량과 낮은 토양유실량을 나타내었다.

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Effect of Carriers on Residue of Wetting Agent Containing Polyoxyethylene Octylphenyl Ether, Initial Wetting and Water Movement in Container Media (증량제의 종류가 Polyoxyethylene Octylphenyl Ether를 포함한 토양습윤제의 상토내 잔류성, 상토의 수분보유 및 이동에 미치는 영향)

  • Choi, Jong Myung;Min, Kyung Rae
    • Horticultural Science & Technology
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    • v.18 no.6
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    • pp.839-844
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    • 2000
  • In developing of soil wetting agents using the mixture of polyoxyethylene octylphenyl ether [$C_8H_{17}O$ $(C_2H_4O)_{10}H$, POE] and polyoxyethylene+polypropyleneoxide tridecylether (1:1, w/w, CM-1), the effect of base carriers such as zeolite and vermiculite on changes of concentration of POE and on initial wetting of peat-vermiculite media were determined. The concentration of POE in the treatment of zeolite was higher than that of vermiculite. The treatments of POE+CM-1 with zeolite or vermiculite as carrier were effective in initial water retention of root media having about 510 mL of water per pot, where those of AquaGro and control had 490 mL and 400 mL of water per pot, respectively. In the evaporative water loss, the treatment of zeolite and AquaGro were faster than those of control and vermiculite. The treatment of AquaGro had faster water movement in root media than those of POE+CM-1 regardless of carriers and same trends were observed in the volume of water infiltrating into root media. Also, increasing the amount of POE+CM-1 resulted in increased water retention capacity, evaporative water loss, water movement in root media and amount of water infiltrating into root media.

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Weed Growth and Effective Control in Direct-seeded Rice Fields (벼 건답직파재배답(乾畓直播栽培畓)에서의 잡초발생(雜草發生) 및 효과적(效果的)인 방제체계(防除體系))

  • Choi, Chung-Don;Moon, Byeong-Chul;Kim, Soon-Chul;Oh, Yun-Jin
    • Korean Journal of Weed Science
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    • v.15 no.3
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    • pp.175-182
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    • 1995
  • The experiment was conducted to obtain basic information on weed ecology and effective weed control in direct-seeded rice Gelds at National Yeongnam Agricultural Experiment Station in 1994. Double cropping system of rice-barley reduced weed occurrence about 30% as compared with rice single cropping due to allelopathic effect of barley residue or stubble. Occurrences of red rice (weedy rice), barnyard grass and water foxtail were closely related with tillage method; the greatest occurred in no tillage plot followed by rotavation only and plow plus rotavation. Period of seed germination of barnyard grass and carbgrass varied with temperature and soil depth. In the same environmental condition, the germination period of barnyard grass shortened 3 to 5 days as compared with that of carbgrass. Two systematic applications of herbicides, that is, the first application at 10 to 15 days after seeding and the second at just after flooding, were the most recommendable system in dry-seeded rice field in terms of weed suppression and yield capacity.

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Reduction of pesticide residues in/on mini-tomato by washing at the different harvest days after pesticide spray (약제 살포 후 경과일수별 세척에 의한 방울토마토의 잔류농약경감)

  • Kwon, Hye-Young;Kim, Jin-Bae;Lee, Hee-Dong;Ihm, Yang-Bin;Kyung, Kee-Sung;Kwon, Oh-Kyung;Choi, Dal-Soon;Choi, Ju-Hyun
    • The Korean Journal of Pesticide Science
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    • v.10 no.4
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    • pp.306-312
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    • 2006
  • The objective of this study was to compare the reduction of residues in/on mini-tomato by washing methods and to evaluate the relation of reduction rates in different pesticides. Mini-tomato was sprayed with three commercial pesticides, oxadixyl, thiophanate-methyl and chlorothalonil, and harvested for washing test as 0, 5 and 7 days elapsed. The reduction rates of oxadixyl in/on mini-tomato were 61, 11 and 4%, those of thiophanate-methyl were 89, 89 and 79%, and in case of chlorothlaonil, reduction rates were 84, 84 and 88%, respectively When mini-tomato at 0 day and 5 days after spray was washed by 0.02% of $Sur-ten^{(R)}$ solution, its pesticide residues were reduced by 81 and 55% on oxadixyl, 95 and 91% on thiophanate-methyl, and 97 and 98% on chlorothlaonil. When three wettable powdered pesticides with the same recipe were sprayed, their reduction rates in/on mini-tomato by washing with water at 0, 5 and 7 days were 76, 66 and 43% on oxadixyl, 91, 83 and 82% on thiophanate-methyl, and 65, 68 and 82% on chlorothlaonil, suggesting that the washing effect may be dependent on the amounts of active ingredients and inert types of the pesticides used.

Determination of Allelopathic Activity in Dominant Upland Weeds (밭 주요(主要) 우점잡초의(優占雜草) ALLELOPATHY 작용성(作用性) 검색(檢索))

  • Chun, J.C.;Han, K.W.;Jang, B.C.;Shin, H.S.
    • Korean Journal of Weed Science
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    • v.7 no.2
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    • pp.156-164
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    • 1987
  • Allelopathic activity of dominant upland weed species was determined using aqueous and methanol extracts and dried residues of the weeds. Germination and seedling growth of radish (Raphanus sativus L.) and sesame (Sesamum indicum L.) were greatly inhibited by 2% (w/v) aqueous extracts of Artemisia asiatica Nakai and Portulaca oleracea L., respectively. Great phytotoxicity on both indicator plants occurred by 2% (w/v) aqueous extracts of Capsel/a bursa-pastoris (L.) Medik. A complete inhibition in germination and seedling growth of radish was caused by 2% (w/v) methanol extract of A. asiatica. There was about 90% inhibition in germination and seedling growth of sesame due to 2% (w/v) methanol extracts of A. asiatica, P. oleracea and Trifolium repens L. Phytotoxic effects varied with extract solution, weed species and indicator plants employed, indicating that the weed species contained different contents and kinds of allelopathic chemicals. Water potential and pH adjusted to those of the extracts did not affect germination and seedling growth of the indicator plants. Phytotoxicity increased with increasing concentration of the extracts obtained from four suspected alleopathic weeds. Soil-incorporated plant residues of A. asiatica and P. oleracea caused greater phytotoxicity on radish than those of C. bursa-pastoris and T. repens.

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Development of Functional Halogenated Phenylpyrrole Derivatives (기능성 할로겐화 페닐피롤 )

  • Min-Hee Jung;Hee Jeong Kong;Young-Ok Kim;Jin-Ho Lee
    • Journal of Life Science
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    • v.33 no.10
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    • pp.842-850
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    • 2023
  • Pyrrolnitrin, pyrrolomycin, and pyoluteorin are functional halogenated phenylpyrrole derivatives (HPDs) derived from microorganisms with diverse antimicrobial activities. Pyrrolnitrin is a secondary metabolite produced from L-tryptophan through four-step reactions in Pseudomonas fluorescens, Burkholderia cepacia, Serratia plymuthica, etc. It is currently used for the treatment of superficial dermatophytic fungal infections, has high antagonistic activities against soil-borne and foliar fungal infections, and has many industrial applications. Since pyrrolnitrin is easily decomposed by light, it is difficult to widely use it outdoors. As an alternative, fludioxonil, a synthetically produced non-systemic surface fungicide that is structurally similar and has excellent light stability, has been commercialized for seed and foliar treatment of plants. However, due to its high toxicity to aquatic organisms and adverse effects in human cell lines, many countries have established maximum residue levels and strictly control its levels. Pyrrolomycin and pyoluteorin, which have antibiotic/antibiofilm activity against Gram-positive bacteria and high anti-oomycete activity against the plant pathogen Pythium ultimum, respectively, were isolated and identified from microorganisms. This review summarizes the biosynthesis and production of natural pyrrolnitrin derived from bacteria and the characteristics of synthetic fludioxonil and other natural phenylpyrrole derivatives among the HPDs. We expect that a plethora of highly effective, novel HPDs that are safe for humans and environments will be developed through the generation of an HPD library by microbial biosynthesis and chemical synthesis.

Changes of Monosaccharides Contents in Hydrolysates of Decomposing Plant Residues (식물성(植物性) 유기물질(有機物質)의 부숙과정중(腐熟過程中) 단당류(單糖類)의 함량(含量) 변화(變化))

  • Kim, Jeong-Je;Jang, Yong-Seon;Shin, Young-Oh
    • Korean Journal of Soil Science and Fertilizer
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    • v.23 no.1
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    • pp.21-25
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    • 1990
  • The amounts of monosaccharides in acid hydrolysates of decomposing plant residues under laboratory conditions were determined. Straw of cereal rice and barley, wild grass cutting, and litters of deciduous and coniferous forest trees were treated to decompose for 90 days. Samples for the analysis of mono-saccharides were taken at 3 different periods of incubation. 1. Fractions of monosaccahrides in plant residues steadily decreased with the time of decomposition. In some samples there appeared an intermediate stages where the fractions reached the highest level. 2. Decomposition of barley straw occured at a faster rate than that of rice straw, and so did the decomposition of deciduous litter than that of coniferous litter. 3. Cereal crop residues of rice and barley were richer in monosaccharides than residues of wild grass cutting and forest litters. 4. Distiction between monosaccharides of plant origin and those of microbial origin was not possible to make in this study. 5. Glucose was the predominent monosaccharide and fucose was the monosaccharide contained in the smallest amount. No measurable ribose was detected from any sample. 6. The relative proportion of galactose in creased with the time of incubation. 7. In general, the proportion of fucose decreased with time and so did that of rhamnose, rhamnose of rice straw residue being the exception. 8. The orders of abundance of monosaccharides after decomposition of 90 days were as the following: in rice straw; glucose > xylose > arabinose > galactose > rhamnose > mannose > fucose, in barley straw; glucose > xylose > arabinose > galactose> mannose > rhamnose > fucose, in wild grass cutting; glucose > xylose > galactose arabinose> rhamnose mannose > fucose, in deciduous litter; glucose > arabinose > xylose galactose > mannose > rhamnose = fucose, and in coniferous litter; glucose > xylose > galactose > arabinose mannose > rhamnose > fucose.

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Biogas Production from Agricultural Wastes and Residues in Tropical Region (열대지역(熱帶地域)에서 농산폐유기물(農産廢有機物)을 원료(原料)로한 멘탄가스발생(發生))

  • Joo, Yeong-Hee;Jeon, Yong-Woon;Calilung, Edwin J.;Elepano, Arnold R.
    • Korean Journal of Soil Science and Fertilizer
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    • v.18 no.4
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    • pp.325-335
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    • 1985
  • Biogas production from agricultural wastes were summarized as follows: 1. Biogas Generation Characteristics of Various Manures and Residues a. Gas yield from crop residues like rice straw, rice hull, corn stalk and coconut husk can be improved by addition of animal manures. b. Gas yield from coconut husk can be improved through aerobic fermentation for at least one week before loading in the digester. c. Gas yield from fresh rice straw is better than from pre-fermented one, whether alone or in combination with animal manures. d. Initial study has shown that fresh azolla can be substituted for animal manures in manurerice straw combinations and gas yield derived based on unit volatile solids loaded is actually better than for manure-residue combinations. e. Gas production is highly sensitive to substrate pH and becomes almost nil at a pH of below 6. 2. Effect of ambient conditions and other factors on biogas production in a house hold-size digester. a. Results showed that compaction of rice straw in straw-manure combination can reduce gas yield compared with loosely mixed straw. b. The effective gas production period extended to 70 days using freshly threshed rice straw and fresh cattle manure as feed material. c. Underground and above ground digesters with shade have relatively more stable substrate temperature than aboveground exposed digesters. This relative temperature instability may likely be the reason for lower gas yield for the exposed aboveground digester loaded with loose straw-cattle manure substrate, compared with the underground digester with the same substrate. 3. Economic Analysis a. Based on prevailing costs of fuel, materials, and labor in the Philippines, biogas produced from the household size system is cheaper than either LPG or kerosene. b. If other benefits like organic fertilizer, pollution control and convenience are considered, biogas will surely be the best alternative fuel source.

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Status and Management Strategy of Pesticide Use in Golf Courses in Korea (우리나라 골프장의 농약사용 실태 및 관리방안)

  • Kim, Dongjin;Yoon, Jeongki;Yoo, Jiyoung;Kim, Su-Jung;Yang, Jae E.
    • Journal of Applied Biological Chemistry
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    • v.57 no.3
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    • pp.267-277
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    • 2014
  • Objective of this paper is to assess the available data on the pesticide uses and regulations in the golf courses, and provide the nationwide systematic management options. Numbers of golf courses in Korea are rapidly increasing from 2000s and reached at 421 sites by the end of 2011. Accordingly pesticide usage has been increased with years in direct proportion to the increasing number of golf courses. Amounts of pesticide applied in 2011 were 118,669 kg as of an active ingredient and were in the orders of fungicides (54.9%) > insecticides (24.4%) > herbicides (13.3%) > growth regulators (0.1%). Average pesticide usages in 2011 were 280.9 kg per golf course and $5.4kg\;ha^{-1}$. Frequencies of the residual pesticide detections in green and turf were higher than those in fairway and soil, respectively. Residue of highly toxic pesticides was not detected in golf courses. Ministry of Environment in 2010 has developed the 'golf course pesticide monitoring and management system' which is the advanced online registry for kind and amount of pesticides applied in each golf course. This system is intended for monitoring of the pesticide uses and residual levels and protecting the environmental pollution from pesticides in the golf course. In 2009, management of pesticides in the golf courses became the task of Ministry of Environment, being merged from many federal agency and ministries. The protocol for the site-specific best management practices, on which to base results from the risk assessment, should be set for pesticides in the golf to minimize the environmental impacts.