• Title/Summary/Keyword: Soil fungi

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Colonization of Retama raetam Seeds by Fungi and Their Significance in Seed Germination

  • OUF, S.A.
    • The Korean Journal of Mycology
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    • v.21 no.4
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    • pp.316-322
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    • 1993
  • Examination by scanning electron microscopy and potato-dextrose agar medium showed that the dry seeds of R. raetam were externally free of fungi. When planted in sandy loam soil, the seeds become colonized with eleven soilborne fungal species. The fungi were isolated on cellulose agar, pectin agar and lignin agar media. Aspergillus flavus, A. niger, Penicillium capsulatum and Fusarium oxysporum had broad occurrence and recovered on the three media. The production of hydrolytic enzymes by the isolated fungi depends on the substrate and species. P. capsulatum, P. spinulosum and A. niger had wide enzymatic amplitude and they were able to produce cellulolytic, pectolytic and lignolytic activities on corresponding substrates as well as on seed coat containing media. The lignolytic activities of the isolated species except Chaetomium bostrychods and Trichoderma viride were enhanced on applying the seed coat materials as C-source rather than using lignin. Soaking R. raetam seeds in culture filtrates of the most fungi grown on seed coat supplemented media induced pronounced and distinct stimulating effect on seed germination. The most effective filtrates were those of P. capsulatum, P. spinulosum and Sporotrichum pulverulentum.

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Field Application of Egg and Larval Parasitic Fungi and Chemicals for Controlling Root-knot Nematodes on Some Medicinal Herb (몇종의 선충천적 진균과 화학약제를 이용한 약용작물 뿌리혹선충 방제효과 검토)

  • 박소득;추연대;정기채;심용구;최영연
    • Korean journal of applied entomology
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    • v.32 no.1
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    • pp.105-114
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    • 1993
  • Series of studies were conducted to establish biological and chemical control method for Meloidogyne spp to medical herbs by applied of nematophagous fungi, Arthrobotrys spp, Fusarium spp, and egg parastic fungi, Paecilomyces lilacinus were applied for root-knot nematodes on medicinal herbs, Paeonia albiflora, Codonopsis lanceolata, Cnidium officinale. The results are as follow. In pot experiments, The no. of root gall and egg mass and larvae of Cnidium officinale. The results are as follow. In pot experiments. The no. of root gall and egg mass and larvae of Cnidium officinale, Codonopsis lanceolata, Paeonia japonica lowered in P. Lilacinus treated plots compare to untreated control plots. But A. thaumasia F. oxysporum treated plots were less effective. Effect of egg parasitic fungi and chemical treatment at divided root of Paeonia japonica after sterilized in pot were increased in the fresh weight, root weight, control effect in P. lilacinus treated plots as chemical, Carbo G treated plots compare to untreted control plots. I field experiment, the number of root gall, egg mass and nematode density of Paeonia were also suppressed in P. lilacinus treated plots. It was very effective continuous 2 years and transplanting time on Paeonia japonica infested soil with the M. hapla in field in both region, Chillgok and Euisung treated P. lilacinus as chemical treated plots. Soaking effect of insecticide for Paeonia japonica at diving shoot before transplating in pot were effective for 12hours immersion into 1,000 ppm of Benlate T + Mep Ec, Benlate T + Fenthion EC in pot and field Experiment. In the Examination of fungi activily on P.japonica field 1 year after soil treatment, Number of spore of P. lilacinus were 1,000~1,300 in 3 region except Euisung.

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Diversity of Fungi in Brackish Water in Korea (국내 기수역 환경의 균류 다양성)

  • Jeon, Yu Jeong;Goh, Jaeduk;Mun, Hye Yeon
    • The Korean Journal of Mycology
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    • v.48 no.4
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    • pp.457-473
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    • 2020
  • We investigated the distribution and diversity of fungi in brackish water and soil from the Eulsukdo Island, Geumgang Estuary Bank, Suncheon Bay, Dae-ho Tide Embankment and coastal sand dune in Sinduri and Bu-nam Tide Embankment, Korea. Fungi were isolated from water samples by hand-pumped filtration, and soil samples were collected and diluted. The isolated fungi were incubated in potato dextrose agar at 25℃. A total of 173 fungal strains were isolated from brackish water and identified according to their respective internal transcribed spacer via phylogenetic analysis. The diversity of all fungal strains was analyzed according to diversity indices. The fungal strains belonged to any of 18 taxonomic orders: Pleosporales, Eurotiales, Capnodiales, Hypocreales, Polyporales, Saccharomycetales, Agaricales, Glomerellales, Mucorales, Dothideales, Russulales, Xylariales, Sordariales, Myrmecridiales, Tubeufiales, Onygenales, Cantharellales, and Amphisphaeriales. Cladosporium spp. (20%), Penicillium spp. (19%), and Fusarium sp. (5%) comprised majority of the identified strains. Two species from the fungal isolates were newly identified in Korea: Sarocladium kiliense NNIBRFG3280 and Fusicolla merismoides NNIBRFG23708.

Soil Chemical Properties, Microbial Community and Ginseng Root Rot in Suppressive and Conducive Soil Related Injury to Continuously Cropped Ginseng (인삼 연작장해 유발토양과 억제토양의 화학성, 미생물상 및 뿌리썩음병 발생 특성)

  • Lee, Sung Woo;Lee, Seung Ho;Seo, Mun Won;Jang, In Bok;Kwon, Ra Yeong;Heo, Hye Ji
    • Korean Journal of Medicinal Crop Science
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    • v.28 no.2
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    • pp.142-151
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    • 2020
  • Background: Suppressive soil inhibits soil-borne diseases if pathogens are present, and ginseng does not show injury even if replanted in the same field. Methods and Results: Soil chemical properties and microbial community of soil were investigated in soil suppressive and conducive to ginseng root rot. Root rot disease in 2-year-old ginseng was tested by mixing conducive soil, with suppressive or sterilized suppressive soil. The root rot ratio in suppressive soil was 43.3% compared to 96.7% in conducive soil. Biological factors acted to inhibit the root rot because disease ratio was increased in the sterilized suppressive soil compared to that in non-suppressive soil. The suppressive soil had lower pH, nitrate nitrogen and sodium than the conducive soil. Dominat bacteria and fungi (more than 1.0%) were 3 and 17 species in conducive soil and 7 and 23 species in suppressive soil, respectively. The most predominant fungi were Pseudaleuria sp. HG936843 (28.70%) in conducive soil and Pseudogymnoascus roseus (7.52%) in suppressive soil. Conclusion: Microbial diversity was more abundant in the suppressive soil than in the conducive soil, and the proportion of pathogens (Nectriaceae sp.) causing root rot was significantly lower in the suppressive soil than in the conducive soil.

Effects of Salt-induced Stress on the Fluctuation and Rhizosphere Colonization of Soil Microorganisms (염류(鹽類)의 스트레스가 주요(主要) 토양미생물(土壤微生物)의 변동(變動) 및 근권정착성(根圈定着性)에 미치는 영향(影響))

  • Kwon, Jang-Sik;Suh, Jang-Sun;Weon, Hang-Yeon
    • Korean Journal of Soil Science and Fertilizer
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    • v.31 no.3
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    • pp.291-300
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    • 1998
  • A study was carried out to evaluate the effect of different salts and their Quantities on the fluctuation and rhizosphere colonization of soil microorganisms. The results obtained are as follows. The electrical conductivities(ECs) of $KNO_3$, $K_2HPO_4$, KCl and $K_2SO_4$ showed negative correlations to the number of gram positive bacteria and gram negative bacteria : the number of bacteria was significantly decreased in the KCl or $KNO_3$ treated group compared to the $K_2HPO_4$ or $K_2SO_4$ treated group. The highest microorganism density of gram negative bacteria, gram positive bacteria and Fusarium sp. in balanced salts-treated soil was observed at $0.5dS\;m^{-1}$, $2.1dS\;m^{-1}$ and $8.0dS\;m^{-1}$ of EC, respectively. The ratio of bacteria to fungi ratio in balanced salts-treated soil substantially decreased as the EC of soil increased. Ten and thirty days after soil treatment with balanced salts, the ratio of bacteria to fungi decreased to 757-1571 and 89-215, respectively. Root colonization density of Fluorescent Pseudomonas in cucumber and tomato significantly decreased as the EC of soil increased, whereas that of Fusarium sp. increased.

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Comparison of Soil Higher Fungal Communities between Dead and Living Abies koreana in Mt. Halla, the Republic of Korea

  • Kim, Chang Sun;Jo, Jong Won;Lee, Hyen;Kwag, Young-Nam;Cho, Sung Eun;Oh, Seung Hwan
    • Mycobiology
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    • v.48 no.5
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    • pp.364-372
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    • 2020
  • To improve our understanding of the relationship between soil higher fungi (belonging to Ascomycota and Basidiomycota) and Abies koreana, we surveyed A. koreana soil fungal communities in a forest in Mt. Halla, Jeju Island, Korea by next-generation sequencing (Illumina Miseq). To confirm the soil higher fungal communities, we collected two types of soils from a defined plot: soils with dead (AKDTs) and living A. koreana (AKLTs), respectively. Soil fungi were classified into 2 phyla, 19 classes, 64 orders, 133 families, 195 genera, and 229 OTUs (895,705 sequence reads). Nonmetric multidimensional scaling (NMDS) showed significantly different soil higher fungal communities between AKDTs and AKLTs (p < .05). In addition, the saprophyte composition was significantly affected by A. koreana status (p < .05). The proportion of the mycorrhizal Clavulina spp. was different between soils with AKDTs and AKLTs, suggesting that Clavulina spp. may be a crucial soil fungal species influencing A. koreana. This study will lead to a better understanding of the ecological status of A. koreana in Mt. Halla. In addition, this study could be useful for the conservation and management of A. koreana habitats.

Temporal and Spatial Change in Microbial Diversity in New-developed Wetland Soil Covered by Tamarix chinesis Community in Chinese Yellow River Delta

  • Chen Weifeng;Ann Seoung-Won;Kim Hong-Nam;Shi Yanxi;Mi Qinghua
    • Journal of Environmental Science International
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    • v.14 no.4
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    • pp.367-371
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    • 2005
  • Soil samples were collected from new-developed wetland soil ecosystem of Tamarix chinesis plantation in Chinese Yellow River Delta in different months of 2003. Soil characteristics, temporal change and spatial distribution of microbial community composition and their relationship with nitrogen turnover and circling were investigated in order to analyze and characterize the role of microbial diversity and functioning in the specific soil ecosystem. The result showed that the total population of microbial community in the studied soil was considerably low, compared with common natural ecosystem. The amount of microorganism followed as the order: bacteria> actinomycetes>fungi. Amount of actinomycetes were higher by far than that of fungi. Microbial population remarkably varied in different months. Microbial population of three species in top horizon was corrected to that in deep horizon. Obvious rhizosphere effect was observed and microbial population was significantly higher in rhizosphere than other soils due to vegetation growth, root exudation, and cumulative dead fine roots. Our results demonstrate that microbial diversity is low, while is dominated by specific community in the wetland ecosystem of Tamarix chinesi.

Restriction Analyses of PCR Amplified Partial SSU Ribosomal DNA to Distinguish Arbuscular Mycorrhizal Fungi from Other Fungi Colonizing Plant Roots

  • Lee, Jae-Koo;Tae, Moon-Sung;Eom, Ahn-Heum;Lee, Sang-Sun
    • Mycobiology
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    • v.31 no.2
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    • pp.68-73
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    • 2003
  • Roots of Glycine max and Miscanthus sinensis and soil samples were collected from various field sites at Goesan, Chungbuk in Korea. Microscopic observations of the roots indicated high colonization rates of both arbuscular mycorrhizal fungi(AMF) and other fungi. The partial small subunit of ribosomal DNA genes were amplified with the genomic DNA extracted from their roots by nested polymerase chain reaction(PCR) with universal primer NS1 and fungal specific primers AML Restriction fragment length polymorphism(RFLP) was analyzed using the combinations of three restriction enzymes, HinfI, AluI and AsuC21. Nucleotides sequence analysis revealed that ten sequences from Miscanthus sinensis and one sequence from Glycine max were close to those of arbuscular mycorrhizal fungi. Also, 33% of total clones amplified with NS31-AM1 primers from M. sinensis and 97% from G. max were close to Fusarium oxysporum or other pathogenic fungi, and they were successfully distinguished from AME Results suggested that these techniques could help to distinguish arbuscular mycorrhizal fungi from root pathogenic fungi in the plant roots. Especially, DNA amplified by these primers showed distinct polymorphisms between AMF and plant pathogenic species of Fusarium when digested with AsuC21.

Heavy Metal Tolerance of Fungi Isolated from Contaminated Soil

  • Joo, Jin-Ho;Hussein, Khalid A.
    • Korean Journal of Soil Science and Fertilizer
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    • v.45 no.4
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    • pp.565-571
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    • 2012
  • This study was conducted to investigate the tolerance of some resistant fungal strains from soils contaminated with heavy metals. Various fungal strains were isolated from soil samples collected from studied sites which heavy metals and other pollutants have been emitted in effluents for several years. Fungi isolated belong to different genera; however, Penicillium spp. showed the most frequent species. The microbial number was remarkably higher in the control soil than contaminated soil samples collected from mining areas. $Pb^{2+}$ and $Zn^{2+}$ had the highest concentration in the polluted soils ranging from 89 - 3,521 ppm and 98 - 4,383 ppm, respectively. The minimum inhibition concentrations (MICs) of $Pb^{+2}$ and $Zn^{+2}$ showed the highest values against the fungal strains. $Ni^{+2}$ and $Co^{+2}$ were the lowest contaminants in the polluted soils with the concentration of 5 to 12.1 ppm and 1.8 to 4.8 ppm, respectively. The tested resistant strains showed the strongest inhibition for $Ni^{+2}$ and $Co^{+2}$ up to 200-400 ppm. Cadmium was the most highly toxic heavy metal for most of strains, however, 1 mM of $Cr^{3+}$, $Cu^{2+}$ and $Pb^{2+}$ accelerated the growth of Penicillium verrucosum KNU3. $Cu^{+2}$ and $Zn^{+2}$ at concentration of 1 mM did not affect the growth rate P. funiculosum KNU4. Tolerance of fungal species to heavy metals appears to be strain and origin dependent.

Ecology of Rhizome Rot Incidence of Ginger and Relation of Soil Texture, Chemistry and Biology (생강 근경부패병의 발생 생태 및 토성 , 토양화학성 및 토양 생물성과의 관계)

  • Lee, Wang-Hyu;Lee, Doo-ku
    • Korean Journal of Environmental Agriculture
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    • v.17 no.1
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    • pp.1-4
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    • 1998
  • The ecology of rhizome rot incidence rates between Seosan, Chungnam and Bongdong, Chonbuk province were surveyed in this experiment. The rhizome rot incidence rate of Seosan was lower than that of Bongdong. The average ginger product of former province was 1,140kg, whereas it's 818kg per 10a. in latter province. Treatment after disease incidence frequently used fungicide at Seosan. There were different soil physiological property between fields. Although Eunhari and Yulsori were belong to Bongdong province, incidence rate was low at Eunhari, contained 23% clay and high incidence rate at Yulsori, approximately contained 60% silt. Many soil chemical properties of cultivated area were belong to optimum concentration range, but phosphate(P) was higher than optimum concentration, 450-550ppm. The number of soil fungi in the middle of cultivated season tended to show the highest. Both bacteria and actinomyces` number was similar to the result of fungi. The bacteria/fungi ratio was greatly different between surveyed fields.

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