• Title/Summary/Keyword: Soil bin

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Characterizations of Restriction Endonuclease EagBI from Enterobacter agglomerans CBNU45 (Enterobacter agglomerans CBNU45로부터 분리된 제한효소 EagBI 의 특성)

  • Choe, Yeong-Ju;Kim, Seong-Jae;Hwang, Hye-Yeon;Im, Jeong-Bin;Kim, Yeong-Chang
    • Korean Journal of Microbiology
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    • v.32 no.1
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    • pp.91-95
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    • 1994
  • EagBI is a type II restriction endonuclease from Enterobacter agglomerans strain CBNU45 isolated from soil. EagBI was partially purified by DEAE-cellulose, phosphocellulose P11 and hydroxylapatite column chromatography. EagBI recognizes and cleaves the sequence 5'-CGAT${\downarrow}$CG-3' and generates 2-base 3'-protruding cohesive ends. The optimal reaction conditions of EagBI are 10 mM Tris-HCl (pH 7.8), 6-10 mM $MgCl_2$, at 37 ${\circ}C$. The enzyme is maximally active in the absence of NaCl, able to cleave both $dam^-$ and $dam^+$ DNAs, and sensitive to heat treatment (at 65 ${\circ}C$ for 10 min). Therefore, although EagBI is an isoschizomer of PvuI, it is more useful than PvuI in respect of the NaCl requirement and heat-stability.

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Carbon Isotope Analysis for the Climatic Environment Change in South Korea During the Holocene: a Case Study in Yengjong Islands of Yellow Sea (탄소동위원소분석을 이용한 한국 홀로세의 기후환경변화: 서해 영종도지역을 사례로)

  • Jung, Hea-Kyung;Park, Ji-Hoon;Kim, Cheong-Bin
    • Journal of the Korean earth science society
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    • v.31 no.4
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    • pp.313-321
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    • 2010
  • The landform of the study area is defined as a small-scale alluvial plain in the valley bottom adjacent to the coast. By the aggradation of alluvial materials, this valley bottom plain was formed in dissected parts of low hills. For the purpose of reconstructing the palaeo climate environment in this study, $\delta^{13}C$ analysis and soil organic carbon analysis are therefore employed. Main results of this study are as follows: Section I: the period of $6,600{\pm}60yr$ B.P.$-5,350{\pm}60yr$B.P. was mostly in warm and humid climate environment. A little changes of the humid environment are detected as subdry (or sub-humid)${\rightarrow}$humid in terms of the dryness and wetness. Section II: the period of $5,350{\pm}60yr$ B.P.-2,200 yr B.P. was in warm and humid climate environment, which is similar to the present. However, The sediments between $4,720{\pm}60yr$ B.P. and $4,210{\pm}50 yr$ B.P. experienced the most humid climate environment of all studied sedimentary layers. After $4,210{\pm}50 yr$ B.P., the environment started to change from the humid to the sub-humid (or sub-dry) climate. Section III: the period of 2,200 yr B.P.$-210{\pm}60 yr$ B.P. was distinguish from previous two sections as the environmental changes to sub-humid (or sub-dry) climate was apparent.

Humus Analysis for the Geomorphic Development and Climatic Environment Change of Alluvial Plain in Hampyeongcheon Basin during the Late Holocene (휴무스분석을 이용한 함평천 유역의 홀로세 후기 충적평야의 지형발달과 기후환경변화)

  • Jung, Hea-Kyung;Kim, Cheong-Bin
    • Journal of the Korean earth science society
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    • v.33 no.4
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    • pp.320-328
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    • 2012
  • To investigate geomorphic development of alluvial plains and climatic environment change during the late Holocene carbon dating, soil organic carbon analysis and humus analysis of sediments from alluvial plain of Hampyeongcheon basin were performed. The lowest peat layer was formed under warm and humid climates, which is considered to correspond to the Atlantic period in the Holocene. Yellowish brown sandy clay layer was deposited in the natural levee, which we think were deposited in the generally warm and dry climates. The carbon dating age is 1,879-1,532 BC, and this period correspond to the Sub-boreal period in the Holocene. Light brown clay layer is assumed to have been deposited in transitional environment from the natural levee to the back marsh. The climatic environment was warm and humid, which is considered as transitional period from the Sub-boreal to the Sub-Atlantic in the Holocene. Light yellowish brown and light brown clay layer of the upper part are regarded as sediments of the back marsh. Light yellowish brown clay layer was deposited in the cold and dry climates, which is considered to correspond to the Sub-Atlantic period in the Holocene. Light brown clay layer was deposited in the warm and dry climates. The carbon dating age is 211-427 AD, this period corresponds to the Post Roman Warm Period in the Holocene.

Growth Stimulation of Pines by Artificial Inoculation with Mycorrhizal Fungus, Pisolithus tinctorius (균근균(菌根菌)의 인공접종(人工接種)에 의(依)한 소나무류(類)의 생장촉진(生長促進))

  • Koo, Chang Duck;Lee, Kyung Joon;Yim, Kyong Bin
    • Journal of Korean Society of Forest Science
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    • v.55 no.1
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    • pp.22-29
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    • 1982
  • Two ectomycorrhizal fungi, Pisolithus tinctorius and Thelephora terrestris, were introduced form U.S.A. and inoculated to five pine species in Korea to evaluate the reported growth stimulation of host plants after inoculation. These fungi were grown as mycelial inoculum in large quantity and ioculated to the fumigated nursery soil just before seed sowing. At the end of the first growing season. Pisolithus stimulated the height growth of Pinus densiflora. P. thunbergii. P. rigida, and P. rigida x teada by55, 36, 69, and 37%, respectively, compared with control seedlings with no fumigation and no inoculation. When the growth stimulation was expressed with dry weight, Pisolithus increased dry weight of P. densiflora and P. rigida x taeda by 143% and 128%, respectively, over control seedling. Thelephora failed to stimulate growth of inoculated plants. Pinus koraiensis did not respond to the inoculation during the first growing season. It is concluded that artificial inoculation of nursery pine trees with selected mycorrhizal fungi should be seriously considered to improve the quality of planting stocks and to stimulate early plant growth. The potential for use of Pisolithus in reforestation on adverse sited is also discussed.

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Microbial degradation of the persistent pollutant TCAB : (II) -Degradation of TCAB by isolated microorganisms- (난분해성(難分解性) 공해물질(公害物質) TCAB의 미생물(微生物)에 의(依)한 분해(分解) : (II) -분리(分離) 균주(菌株)에 의(依)한 TCAB의 분해(分解)-)

  • Lee, Jae-Koo;Ihm, Yang-Bin;Cho, Yong-Gyun;Kyung, Kee-Sung;Oh, Kyeong-Seok;Kim, Hak-Nam
    • Applied Biological Chemistry
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    • v.34 no.4
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    • pp.299-306
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    • 1991
  • When $[U-^{14}C]$ 3,3', 4,4'-tetrachloroazobenzene$([U-^{14}C]\;TCAB)$ was added to the $MM_2$ medium as a sole carbon source for the isolated microorganisms and incubated, some radioactive metabolites were detected by autoradiography. No $^{14}CO_2$ was evolved from $[U-^{14}C]\;TCAB$ which was added as a sole carbon source to an organic matter-free soil inoculated by the isolates, wetted with the $MM_2$ salt medium, and incubated at $30^{\circ}C$. One of the metabolites in pure culture of Achromobacter group VD, which was isolated and identified, was tentatively identified as a compound of m/z 250 by means of GC/MS. The possible pathways for its formation are thought to include dechlorination from the TCAB structure, hydroxylation, ortho fission of the two benzene rings, and reduction of the resulting carboxyl group.

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Calculation of Deterioration Depth of Major Rock Type Slopes caused by Freezing-Thawing in Korea (국내 주요 암종별 사면의 동결-융해에 의한 열화심도 계산)

  • Kwon, O-Il;Baek, Yong;Yim, Sung-Bin;Seo, Yong-Seok
    • The Journal of Engineering Geology
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    • v.17 no.3
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    • pp.359-365
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    • 2007
  • Freezing and thawing cycle is one of the major weathering-induced factors in the mechanical weathering of the rock mass. This natural process accelerates rock weathering process by breaking down the parent rock materials and makes soil or weathered rock formation in a rock slope surface zone. It can also cause reduction of the shear strength in slopes. It is important to calculate the deterioration depth caused by freezing-thawing for a slope stability analysis. In this study, deterioration depths of rock slope due to freezing-thawing were calculated using the 1-D heat conductivity equation. The temperature distribution analysis was also carried out using collected temperature distribution data for last five years of several major cities in Korea. The analysis was performed based on the distributed rock types in study areas. Thermal conductivities, specific heats and densities of the calculation rocks are tested in the laboratory. They are thermal properties of rocks as input parameters for calculating deterioration depths. Finally, the paper is showing the calculated deterioration depths of each rock type slopes in several major cities of Korea.

Weed Flora of Arable Peat in Selangor, Malaysia - Quantitative and Spatial Pattern Analyses (말레이지아 세랑고지역 부식질토양경지 잡초식생의 정량생태분석)

  • Bakar, Baki Bin;Wong Nyuk Yin, Fenny;Kwon, Yong-Woong
    • Korean Journal of Weed Science
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    • v.17 no.4
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    • pp.382-389
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    • 1997
  • Collated data from the 1995-1996 floristic surveys of weeds of arable peat in Selangor district were analysed to assess composition and dominance and spatial distribution pattern based on quantitative and dispersion indices. Forty eight weed species belonging to 19 families of which 31 were broad leaves, 10 grasses and 7 sedges were sampled and these ware translated as 77.8 and 15% of the total cover, respectively, The respective important values were 71.11 and 18%. Ten species in the onder of dominance were Fimbristylis acuminata, Murdannia nudiflora, Hedyotis corymbosa, Ageratum conyzoides, Asystasia gangetica, Cleome rutidosperma, Cyperus sphacelatus, Lindernia crustacea, Ludwigia hyssopifolia of spatial distribution based on variance-to-mean ratios, Llouds mean crowding or Lloyds patchiness indices. Other species were either random or regular in their spatial distribution. Differences in species-dominance and spatial distribution pattern may be attributed to inherent variations in patchiness and fecundity schedules of each weed species, crops, cropping patterns and agronomic practices prevailing in the area.

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The Effect of Coordinate Rotation on the Eddy Covariance Flux Estimation in a Hilly KoFlux Forest Catchment (경사진 KoFlux 산림유역에서 에디공분산 플럭스 산출에 미치는 좌표회전의 효과)

  • Yuan, Renmin;Kang, Min-Seok;Park, Sung-Bin;Hong, Jin-Kyu;Lee, Dong-Ho;Kim, Joon
    • Korean Journal of Agricultural and Forest Meteorology
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    • v.9 no.2
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    • pp.100-108
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    • 2007
  • The Gwangneung KoFlux supersite, located in a rugged mountain region, is characterized by a low wind speed due to a mountain-valley circulation and rolling terrain. Therefore, it is essential to understand the effect of coordinate rotation on flux measurements by the eddy-covariance method. In this paper, we review the properties of three orthogonal coordinate frames (i.e., double, triple, and planar fit rotations) and apply to flux data observed at the Gwangneung supersite. The mean offset of vertical wind speed of sonic anemometer was inferred from the planar fit (PF) coordinate rotation, yielding the diurnal variation of about $\pm0.05ms^{-1}$. Double rotation $(\bar{v}=\bar{w}=0)$ produced virtually the same turbulent fluxes of heat, water, and $CO_2$ as those from the PF rotation under windy conditions. The former, however, resulted in large biases under calm conditions. The friction velocity, an important scaling parameter in the atmospheric surface layer, was more sensitive to the choice of coordinate rotation method.

Effect of Plant Growth Regulators on Regeneration from the Cotyledon Explants in Watermelon (Citrullus lanatus (thunb.) Matsum. & Nakai) (수박(Citrullus lanatus (thunb.) Matsum. & Nakai) 자엽 절편의 재분화에 미치는 생장조절물질의 영향)

  • Cho, Song Mi;Oh, Sang A;Choi, Yong Soo;Park, Sang Bin
    • Korean Journal of Plant Resources
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    • v.27 no.1
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    • pp.51-59
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    • 2014
  • In this study, we developed a high frequency watermelon regeneration system using three breeding lines ('B02', 'B05' and 'D04') of watermelon (Citrullus lanatus (thunb.) Matsum. & Nakai) which are differed in their fruits in shape, color of pericarp and flesh. The highest frequency of explants with callus was observed by using explants that consist of cotyledon proximal part end in all breeding lines, and the highest rate of callus induction was obtained on MS medium containing 1.0 mg/L BAP + 0.5 mg/L IAA for 'B02' (94%), 3.0 mg/L BAP for 'B05' (95%), 3.0 mg/L BAP + 0.1 mg/L IAA for 'D04' (90%). The highest shoot regeneration rates from derived callus were obtained on MS medium containing 1.0 mg/L BAP + 0.5 mg/L IAA for 'B05' (94%), and then a 'B02' (81%) with a same culture conditions, and the lowest regeneration was obtained on MS medium containing 1.0 mg/L BAP for 'D04' (56%). Regenerated plants showed the best rates of root formation on MS containing 0.1 mg/L IBA for 'B02' (67%), 0.1 mg/L NAA for 'B05' (87%), 0.5 mg/L IAA for 'D04' (88%). The regenerated plants showed a 100% survival rate in soil condition. The tissue culture and regeneration conditions obtained from this study will be useful for regenerating plants in breeding applications, and will be a useful tool for further genetic transformation studies on watermelons.

Grouting Injection Effectiveness of a Permeable Compacting Grout using Permeable Compaction Type Packer (침투다짐형 팩커를 이용한 침투다짐 그라우트의 주입 효과)

  • Park, Sung-Yong;Shim, Houng-Gen;Kang, Hee-Jin;Lim, One-Bin;Kim, Yong-Seong
    • Journal of the Korean Geosynthetics Society
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    • v.16 no.2
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    • pp.149-158
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    • 2017
  • Permeating injection is commonly known as an ideal type of injection in grouting reservoir embankment, yet often-combined permeating and fracturing injection grouting operation can disturb the original soil. A grouting method has been regarded as effective and developed to ameliorate the possible disturbance problem. It involves compaction grouting with low expansive pressure near the injection hole and repetitive injection and compaction with grout material that allows ideal permeating injection. This thesis develops Hybrid Grout (ie. HG grout) that allows various application in any ground condition combined together, has high fineness and low viscosity, and expands permeation injection to silty sand. It researches on the injection effect of permeable compaction grout which is done with PC packer and is a combination of HG grout and expansion agent to obtain permeation compaction effect on the area near grout injection spot by developing Permeable Compaction Type Packer(ie. PC packer). As the developed PC packer, HG grout, and and expansion agent (HI-E) are applied to reservoir embankment reinforcement grouting, possibile permeation compaction effect that satisfies reservoir embankment grouting standard is confirmed according to the research.