• Title/Summary/Keyword: Soil Mapping

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Identification and molecular characterization of downy mildew resistant gene candidates in maize (Zea mays subsp. Mays)

  • Kim, Jae Yoon;Kim, Chang-Ho;Kim, Kyung Hee;Lee, Byung-Moo
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2017.06a
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    • pp.113-113
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    • 2017
  • Downy mildew (DM), caused by several species in the Peronosclerospora and Scleropthora genera, is a major maize (Zea mays L.) disease in tropical or subtropical regions. DM is an obligate parasite species in the higher plants and spreads by oospores, wind, and mycelium in seed surface, soil, and living hosts. Owing to its geographical distribution and destructive yield reduction, DM is one of the most severe maize diseases among the maize pathogens. Positional cloning in combination with phenotyping is a general approach to identify disease resistant gene candidates in plants; however, it requires several time-consuming steps including population or fine mapping. Therefore, in the present study, we suggest a new combination strategy to improve the identification of disease resistant gene candidates. Downy mildew (DM) resistant maize was selected from five cultivars using the spreader row technique. Positional cloning and bioinformatics tools identified the DM resistant QTL marker (bnlg1702) and 47 protein coding genes annotations. Eventually, 5 DM resistant gene candidates, including bZIP34, Bak1, and Ppr, were identified by quantitative RT-PCR without fine mapping of the bnlg1702 locus. Specifically, we provided DM resistant gene candidates with our new strategy, including field selection by the spreader row technique without population preparation, the DM resistance region identification by positional cloning using bioinformatics tools, and expression level profiling by quantitative RT-PCR without fine mapping. As whole genome information is available for other crops, we propose applying our novel protocol to other crops or for other diseases with suitable adjustment.

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The Case Studies on Application of Mat Foundation System to Building Structure Founded on Weathered Ground (풍화대지반에 지지된 건축구조물의 전면기초 적용에 관한 사례 연구)

  • Choi, Yongkyu;Kim, Sungho;Lee, Minhee
    • Journal of the Korean GEO-environmental Society
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    • v.10 no.6
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    • pp.5-18
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    • 2009
  • In construction of buildings in Korea, the buildings are frequently founded on the weathered ground (weathered soil/rock, fractured rock). In this case, to make a full use of a bearing capacity of a weathered ground for economic design, the shallow mat foundation system could be used. In this study, we have researched three cases of mat foundations on the weathered ground in Korea, and analyzed and considered the design procedures and the reinforcing methods. That is, we have considered the detail design, analysis proceedings, the ground settlement evaluation proceedings, the rock face mapping evaluations after excavation and reinforcing methods of the mat foundation on the weathered ground. And large scale plate load tests on the weathered ground supporting the mat foundation were performed and also load bearing capacity and settlement of actual mat foundation, considering the scale effect, were evaluated.

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Landslide Detection and Landslide Susceptibility Mapping using Aerial Photos and Artificial Neural Networks (항공사진을 이용한 산사태 탐지 및 인공신경망을 이용한 산사태 취약성 분석)

  • Oh, Hyun-Joo
    • Korean Journal of Remote Sensing
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    • v.26 no.1
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    • pp.47-57
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    • 2010
  • The aim of this study is to detect landslide using digital aerial photography and apply the landslide to landslide susceptibility mapping by artificial neural network (ANN) and geographic information system (GIS) at Jinbu area where many landslides have occurred in 2006 by typhoon Ewiniar, Bilis and Kaemi. Landslide locations were identified by visual interpretation of aerial photography taken before and after landslide occurrence, and checked in field. For landslide susceptibility mapping, maps of the topography, geology, soil, forest, lineament, and landuse were constructed from the spatial data sets. Using the factors and landslide location and artificial neural network, the relative weight for the each factors was determinated by back-propagation algorithm. As the result, the aspect and slope factor showed higher weight in 1.2-1.5 times than other factors. Then, landslide susceptibility map was drawn using the weights and finally, the map was validated by comparing with landslide locations that were not used directly in the analysis. As the validation result, the prediction accuracy showed 81.44%.

Current and Future Status of GIS-based Landslide Susceptibility Mapping: A Literature Review

  • Lee, Saro
    • Korean Journal of Remote Sensing
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    • v.35 no.1
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    • pp.179-193
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    • 2019
  • Landslides are one of the most damaging geological hazards worldwide, threating both humans and property. Hence, there have been many efforts to prevent landslides and mitigate the damage that they cause. Among such efforts, there have been many studies on mapping landslide susceptibility. Geographic information system (GIS)-based techniques have been developed and applied widely, and are now the main tools used to map landslide susceptibility. We reviewed the status of landslide susceptibility mapping using GIS by number of papers, year, study area, number of landslides, cause, and models applied, based on 776 articles over the last 20 years (1999-2018). The number of studies published annually increased rapidly over time. The total study area spanned 65 countries, and 47.7% of study areas were in China, India, South Korea, and Iran, where more than 500 landslides, 27.3% of all landslides, have occurred. Slope (97.6% of total articles) and geology (82.7% of total articles) were most often implicated as causes, and logistic regression (26.9% of total articles) and frequency ratio (24.7% of total article) models were the most widely used models. We analyzed trends in the causes of and models used to simulate landslides. The main causes were similar each year, but machine learning models have increased in popularity over time. In the future, more study areas should be investigated to improve the generalizability and accuracy of the results. Furthermore, more causes, especially those related to topography and soil, should be considered and more machine learning models should be applied. Finally, landslide hazard and risk maps should be studied in addition to landslide susceptibility maps.

Mapping Quantitative Trait Loci Associated with Arsenic Toxicity Stress in a Double Haploid Population of Rice (Oryza sativa L.)

  • Saleem Asif;Rahmatullah Jan;Kyung-Min Kim
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2022.10a
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    • pp.282-282
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    • 2022
  • Arsenic (As) is a toxic heavy metal that affects the major rice-growing regions of the world and can cause cancer in humans. Rice paddy fields in South Asia are mostly dependent on arsenic-contaminated water sources due to which rice takes up the arsenic from the soil through roots and accumulates it in plant different parts. Here, we present a quantitative trait locus (QTL) mapping study to find out candidate genes conferring As toxicity tolerance in rice (Oryza sativa L.) at the seedling stage. Three weeks old, 120 double haploid CNDH lines derived from a cross between the Indica variety Cheongcheong and the Japonica variety Nagdong and their parental lines were used by treating with 25 μM As. After 2 weeks ofAs stress, 5 traits such as; shoot length (SL), root length (RL), shoot fresh weight (SFW), root fresh weight (RFW), and chlorophyll contents (CHC) were measured. A linkage map of 12 rice chromosomes was constructed from genotypic data DH lines using 778 SSR markers. The linkage map covered a total genetic distance of 2121.7 cM of the rice genome with an average interval of 10.6 cM between markers. A total of seventeen QTLs (LOD>2) were mapped on chromosomes 1, 2, 3, 6, 7, 8, 9, 11, and 12 using composite interval mapping with trait-increasing alleles coming from both parents. Five QTLs for SL, Two QTLs for RL, Five QTLs for SHL, Three QTLs for RFW, and Two QTLs for CHC were detected. The QTLs related to CHC were selected for forther study.

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Biotope Mapping of Pinus densiflora Based on Growth Environment of Tricholoma matsutake - A Case Study of Yangyang-gun, Kang Won-do - (송이 생육환경 특성을 고려한 소나무비오톱지도 작성 연구 - 강원도 양양군을 사례로 -)

  • Han, Bong-Ho;Park, Seok-Cheol;Kwak, Jeong-In;Kim, Bo-Hyun;Lee, Kyong-Jae
    • Korean Journal of Environment and Ecology
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    • v.25 no.2
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    • pp.211-226
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    • 2011
  • The purpose of this paper was to ensure the basis for effective management of Tricholoma matsutake mountain province, to perform biotope mapping of Pinus densiflora based on growth environment of Tricholoma matsutake, target a cluster of Yangyang-gun, Kang Won-do. Study Methods were to review on growth and environmental characteristics of Tricholoma matsutake through internal and external documents and to identify vegetational structure and soil characteristics. This paper studied growth structure and soil environment of Pinus densiflora forest where a farm of production area for Tricholoma matsutake of in order to set the standard of Pinus densiflora biotope. Mapping standards were derived by separating of landform conditions, soil conditions, vegetation conditions. Biotope types were divided into possible production area for Tricholoma matsutake and potential production area for Tricholoma matsutake, possible production area for Tricholoma matsutake were Pinus densiflora biotope in landform and soil structure that enables Tricholoma matsutake production and Single-layered Pinus densiflora biotope of less than 30cm(DBH)-Tree species that other shrub is dominant in shrub layer, Multi-layered Pinus densiflora biotope that Pinus densiflora forest was predominant in understrory layer. Potential production area for Tricholoma matsutake were single-layered Pinus densiflora biotope of more than 30cm(DBH) in landform that enables Tricholoma matsutake production, Pinus densiflora biotope with Quercus predominant in the understrory layer, single-layered Pinus densiflora biotope with Quercus predominant in shrub layer, inappropriate vegetation structure area that the induction of production of Tricholoma matsutake was possible through future vegetation management. According to the research results, Pinus densiflora forest were divided into 16 types; 6 types of possible Tricholoma matsutake production areas, 9 potential Tricholoma matsutake production areas and 16 types of areas where Tricholoma matsutake production was impossible. Possible production areas account for 15.48%, or $9.8km^2$ out of the total Pinus densiflora forest while potential production areas take up 32.42%, or $20.52km^2$, and areas where Tricholoma matsutake production was impossible was 52.10%, or $32.97km^2$.

Biotope Types and Mapping for Ecological Management of Tricholoma matsutake Production Area: The Case of Expressway in Yangyang-gun, Gangwon-do (송이생산지의 생태적 관리를 위한 소나무비오톱 유형화 및 지도 작성: 강원도 양양군 동서고속도로 건설구간을 중심으로)

  • Kim, Jeong-Ho;Choi, Song-Hyeon;Yoon, Yong-Han
    • Journal of Environmental Policy
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    • v.11 no.3
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    • pp.25-47
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    • 2012
  • This research is to suggest an ecological management methods by classification of biotope type and its mapping for Tricholoma matsutake. The target area was construction site of the East Hongchun - Yangyang Highway (Yangyang section) where massive production of Tricholoma matsutakes is in place. Specifically, the 700 m long range of area around the road route, Yangyang section, which is over a total area of $19,79km^2$. The flow of this research was as follows: first studied were the characteristics of the Yangyang Tricholoma matsutakes; second, reviews on previous studies on Tricholoma matsutakes; third, the formulation of standards and processes of biotope type considering Tricholoma matsutake production; and fourth, mapping of biotope considering the production area of Tricholoma matsutake. In 24.77% of the region, slope angle measured $30{\sim}40^{\circ}C$, which is suitable for Tricholoma matsutake production. Also, 17.44% of the region had southward vegetation structures, and as for the Pinus densiflora; 26.00% had average receipts; the tree ages was $38{\pm}8.34$ years; and the average density of canopy layer was $9.55{\pm}4.89/100m^2$. The soil acidity (pH) values of 5.0 to 5.6(47.96%) > 5.6 to 7.0(42.90%) > 4.0 to 5.0(9.14%) were slightly high for Tricholoma matsutake growth; but 57.10% of the area had a soil pH of 4.0-5.6. The organic horizon (A0 layer) was $3.39{\pm}2.14cm$, and the mean depths were 4-6cm(78.03%) > 0-2cm(18.10%) > 2-4cm(3.87%). Based on the results of previous studies and field researches on the presence of vegetation (the pine dominance ratio), the topographic structure (the terrain characteristics and slopes), the receipt, the soil structure (the soil acidity and the organic layers interposed between the depths), and the vegetation density, six clusters based on the identified types of biotopes are produced in this paper. Area of distribution according to the type of biotope was Tricholoma matsutake of the potential-production (II) biotope (32.86%) > Tricholoma matsutake of the inadequate-production biotope (22.17%) > Tricholoma matsutake of the adequate (II)-production biotope (17.79%) > Tricholoma matsutake of the adequate (I)-production biotope (14.86%) > Tricholoma matsutake of the potential-production (I) biotope (9.77%) > Tricholoma matsutake of the produced biotope (2.55%).

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Effect of Bacteria in Soil on Microbiologically Influenced Corrosion Behavior of Underground X65 Pipeline (토양 속 박테리아가 지하매설 X65 배관의 미생물 부식 거동에 미치는 영향)

  • Choe, Byung Hak;Han, Sung Hee;Kim, Dae Hyun;Kim, Woosik;Kim, Cheolman;Choi, Kwang Su
    • Korean Journal of Materials Research
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    • v.32 no.3
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    • pp.168-179
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    • 2022
  • Microbiologically Influenced Corrosion (MIC) occurring in underground buried pipes of API 5L X65 steel was investigated. MIC is a corrosion phenomenon caused by microorganisms in soil; it affects steel materials in wet atmosphere. The microstructure and mechanical properties resulting from MIC were analyzed by OM, SEM/EDS, and mapping. Corrosion of pipe cross section was composed of ① surface film, ② iron oxide, and ③ surface/internal microbial corrosive by-product similar to surface corrosion pattern. The surface film is an area where concentrations of C/O components are on average 65 %/16 %; the main components of Fe Oxide were measured and found to be 48Fe-42O. The MIC area is divided into surface and inner areas, where high concentrations of N of 6 %/5 % are detected, respectively, in addition to the C/O component. The high concentration of C/O components observed on pipe surfaces and cross sections is considered to be MIC due to the various bacteria present. It is assumed that this is related to the heat-shrinkable sheet, which is a corrosion-resistant coating layer that becomes the MIC by-product component. The MIC generated on the pipe surface and cross section is inferred to have a high concentration of N components. High concentrations of N components occur frequently on surface and inner regions; these regions were investigated and Na/Mg/Ca basic substances were found to have accumulated as well. Therefore, it is presumed that the corrosion of buried pipes is due to the MIC of the NRB (nitrate reducing bacteria) reaction in the soil.

Current Status of Plasmodiophora brassicae Researches in Korea

  • Kim, Hong Gi;Lim, Yong Pyo
    • 한국균학회소식:학술대회논문집
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    • 2015.05a
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    • pp.29-29
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    • 2015
  • Clubroot disease is caused by the soil-born obligate plant pathogen Plasmodiophora brassicae. This pathogen can infect all cruciferous vegetables and oil crops, including Brassica rapa, B. oleracea, B. napus, and other Brassica species. Clubroot disease is now considered to be a major problem in Chinese cabbage production in China, Korea, and Japan. We collected several hundreds of P. brassicae infected galls from Korea, and isolated the single spore from the collection. For establishment of novel isolation, and mass-propagation methods for singe spore isolates of P. brassicae pathogen, we developed new filtration method using both cellulose nitrate filter and syringe filter. Accurate detection of P. brassicae pathogen in the field was done by using real-time PCR in the potential infested soil. When we tested the different pathogenicity on commercial Chinese cabbage varieties, P. brassicae from collected galls showed various morphological patterns about clubroot symptom on roots. To date, 8 CR loci have been identified in the B. rapa genome using the quantitative trait loci (QTL) mapping approach, with different resistant sources and isolates. We are trying to develop the molecular marker systems for detect all 8 CR resistant genes. Especially for the study on the interaction between pathogens and CR loci which are not well understood until now, genome wide association studies are doing using the sequenced inbred lines of Chinese cabbage to detect the novel CR genes.

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A Production Method of Landslide Hazard Map by Combining Logistic Regression Analysis and AHP(Analytical Hierarchy Process) Approach Selecting Target Sites for Non-point Source Pollution Management Using Analytic Hierarchy Process

  • Lee, Yong-Joon;Park, Geun-Ae;Kim, Seong-Joon
    • Journal of The Korean Society of Agricultural Engineers
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    • v.49 no.3
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    • pp.63-68
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    • 2007
  • The LRA(Logistic Regression Analysis) conducts a quantitative analysis by collecting a lot of samples and the AHP(Analytic Hierarchy Program) makes use of expert decision influenced by subjective judgment to a certain degree. This study is to suggest a combination method in mapping landslide hazard by giving equal weight for the result of LRA and AHP. Topographic factors(slope, aspect, elevation), soil dram, soil depth and land use were adopted to classify landslide hazard areas. The three methods(LRA, AHP, the combined approach) was applied to a $520km^2$ region located in the middle of South Korea which have occurred 39 landslides during 1999 and 2003. The suggested method showed 58.9% matching rate for the real landslide sites comparing with the classified areas of high-risk landslide While LRA and AHP Showed 46.1% and 48.7% matching rates respectively. Further studies are recommended to find the optimal combining weight of LRA and AHP with more landslide data.