• 한국작물학회:학술대회논문집
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• 한국작물학회 2017년도 9th Asian Crop Science Association conference
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• pp.122-122
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• 2017

Wheat wild relatives that have never been domesticated contained useful genetic resources such as the resistance to abiotic and biotic stresses. Leymus racemosus is one of the wild species. It can grow in a harsh environment like seaside and distribute by healthy rhizomes. Also, it has a useful genetic resource such as salt tolerance and different diseases resistance. Wheat (Triticum aestivum L. cv. Chinese Spring; CS) was crossed with L. racemosus. Wheat-L. racemosus disomic addition lines were produced. The purpose of this study is to identify protein expression in each disomic addition line compared to CS. We performed two-dimensional electrophoresis. Two-dimensional gels stained with coomassie brilliant blue (CBB), a total of 1566 differentially expressed proteins were identified by Progenesis Same Spots software from the cultivars. However, a total of 90 protein spots were identified to be either present or absent or showing significantly differential expression when the difference threshold was set to more than 1.5 fold. However, out of the 90 differentially protein spots, a total of 74 spots were sorted for mass spectrometry analysis. The identified proteins may provide important clues for better understanding the molecular changes in the chromosomes carrying Leymus racemosus.

• Genomics & Informatics
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• 제15권1호
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• pp.51-53
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• 2017

High-throughput transcriptome sequencing, also known as RNA sequencing (RNA-Seq), is a standard technology for measuring gene expression with unprecedented accuracy. Numerous bioconductor packages have been developed for the statistical analysis of RNA-Seq data. However, these tools focus on specific aspects of the data analysis pipeline, and are difficult to appropriately integrate with one another due to their disparate data structures and processing methods. They also lack visualization methods to confirm the integrity of the data and the process. In this paper, we propose an R-based RNA-Seq analysis pipeline called TRAPR, an integrated tool that facilitates the statistical analysis and visualization of RNA-Seq expression data. TRAPR provides various functions for data management, the filtering of low-quality data, normalization, transformation, statistical analysis, data visualization, and result visualization that allow researchers to build customized analysis pipelines.

• 한국자원식물학회지
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• 제21권3호
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• pp.210-215
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• 2008

Gene-expression analysis is increasingly important in biological research, with real-time reverse PCR (RTPCR) becoming the method of choice for high-throughput and accurate expression profiling of selected genes. However, this technique requires important preliminary work for standardizing and optimizing the many parameters involved in the analysis. Plant stress studies are more and more based on gene expression. The analysis of gene expression requires sensitive and reproducible measurements for specific mRNA sequence. Several genes are regulated in response to abitoic stresses, such as salinity, and their gene products function in stress response and tolerance. The design of the primers and TaqMan probes for real-time PCR assays were carried out using the Primer $Express^{TM}$ software 3.0. The PCR efficiency was estimated through the linear regression of the dilution curve. To understand the expression pattern of various genes under salt stressed condition, we have developed a unique public resource of 9 stress-related genes in poplar. In this study, real-time RT-PCR was used to quantify the transcript level of 10 genes (9 stress-related genes and 1 house keeping gene) that could play a role in adaptation of Populus davidiana. Real-time RT-PCR analyses exhibited different expression ratios of related genes. The data obtained showed that determination of mRNA levels could constitute a new approach to study the stress response of P. davidiana after adaptation during growth in salinity condition.

• 한국멀티미디어학회논문지
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• 제22권2호
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• pp.260-270
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• 2019

As the growth of developing Islamic countries, Muslims are into the world. The most important thing for Muslims to purchase food, ingredient, cosmetics and other products are whether they were certified as 'Halal'. With the increasing number of Muslim tourists and residents in Korea, Halal restaurants and markets are on the rise. However, the service that provides information on Halal restaurants and markets in Korea is very limited. Especially, the application of recommendation system technology is effective to provide Halal restaurant information to users efficiently. The profiling of Halal restaurant information should be preceded by design of recommendation system, and design of recommendation algorithm is most important part in designing recommendation system. In this paper, an Intelligent Recommendation Service system for offering Halal food (IRSH) based on dynamic profiles was proposed. The proposed system recommend a customized Halal restaurant, and proposed recommendation algorithm uses hybrid filtering which is combined by content-based filtering, collaborative filtering and location-based filtering. The proposed algorithm combines several filtering techniques in order to improve the accuracy of recommendation by complementing the various problems of each filtering. The experiment of performance evaluation for comparing with existed restaurant recommendation system was proceeded, and result that proposed IRSH increase recommendation accuracy using Halal contents was deducted.

• 인터넷정보학회논문지
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• 제16권5호
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• pp.29-38
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• 2015

에너지 저장장치(Energy Storage System)은 전력 수요가 적을 때 전력을 저장해 두었다가 수요가 발생하거나 비상시 저장된 전력을 사용함으로 전기 에너지를 저장하여 필요할 때 사용 가능함으로써 에너지 이용 효율 향상, 전력공급 시스템 안정화 및 신재생 에너지 활용도 향상 효과를 가지는 시스템이다. 최근 세계적으로 에너지의 효율적인 소비에 대한 관심이 증대되면서 전력의 안정적인 공급을 원하는 수요자와 전력 수요 평준화를 원하는 공급자의 요구를 충족시켜줄 수 있는 에너지 저장장치의 필요성이 증대되고 있다. 현재 에너지 저장장치를 구성하는 Power Conditioning System(PCS), Battery Management System(BMS), 배터리 셀은 제조사별로 상이한 규격을 가진다. 이로 인해 각 핵심 부품 간 인터페이스가 규격화되어 있지 않아, 에너지 저장장치의 구성 및 운영에 난점으로 작용하고 있다. 본 논문에서는 제조사별로 상이한 특징을 가지는 부품들의 설정과 효율적 운영에 필요한 정보를 수용하여 에너지 저장장치를 구성할 수 있는 XML 기반의 에너지 시스템 전용 프로파일 시스템의 설계와 분석방안을 제안한다. 제조사별 PCS, BMS, 배터리 셀과 그 외의 주변 기기들의 설정 정보 및 운영 정보를 분석하여 프로파일 규격을 정의하고, 에너지 저장장치에 적용할 수 있는 프로파일 어댑터 소프트웨어를 설계 및 구현한다. 프로파일 어댑터를 통해 생성된 프로파일은 설정 프로파일과 운영 프로파일로 구성되며, 추후 확장성을 고려하여 표준 XML의 규격을 따른다. 구현된 프로파일 시스템의 검증은 에너지 저장장치 시스템에 적용되어 기본적인 충 방전 동작을 통해 정상 동작 결과를 제안한다.

• 한국해양바이오학회지
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• 제2권3호
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• pp.168-173
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• 2007

of expressed sequence tags (ESTs) is an efficient approach for gene discovery, expression profiling, and development of resources useful for functional genomics. To analyze the transcriptome of olive flounder, Paralichthys olivaceus, we have conducted EST analysis using cDNA libraries made from muscle of P. olivaceus. Redundant ESTs were assembled into overlapping contigs by using the assembly program ICAtools software. We found that the 221 ESTs were composed of 21 clusters and 35 singletons, suggesting that the overall redundancy of the library was 74.7%. Of the 221 clones, 218 clones (98.6%) were identified as known genes by BLAST searches and 3 clones (1.4%) did not match to any previously described genes. Based on major functions of their encoded proteins, the identified clones were classified into 13 broad categories. Sequence analysis of the ESTs revealed the presence of microsatellite-containing genes which may be valuable for further gene mapping studies. This study contributes to the identification of many EST clones that could be useful for genetics and developmental biology of olive flounder.

• Asian Pacific Journal of Cancer Prevention
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• 제16권5호
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• pp.1851-1855
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• 2015

Background: There are increasing data about microRNAs (miRNA) in the literature, providing abundant evidence that they play important roles in pathogenesis and development of colorectal cancer. In this study, we aimed to investigate the miRNA expression profiles in surgically resected specimens of patients with recurrent and non-recurrent colorectal cancer. Materials and Methods: The study population included 40 patients with stage II colorectal cancer (20 patients with recurrent tumors, and 20 sex and age matched patients without recurrence), who underwent curative colectomy between 2004 and 2011 without adjuvant therapy. Expression of 16 miRNAs (miRNA-9, 21, 30d, 31, 106a, 127, 133a, 133b, 135b, 143, 145, 155, 182, 200a, 200c, 362) was verified by quantitative real-time polymerase chain reaction (qRT-PCR) in all resected colon cancer tissue samples and in corresponding normal colonic tissues. Data analyses were carried out using SPSS 15 software. Values were statistically significantly changed in 40 cancer tissues when compared to the corresponding 40 normal colonic tissues (p<0.001). MiR-30d, miR-133a, miR-143, miR-145 and miR-362 expression was statistically significantly downregulated in 40 resected colorectal cancer tissue samples (p<0.001). When we compared subgroups, miRNA expression profiles of 20 recurrent cancer tissues were similar to all 40 cancer tissues. However in 20 non-recurrent cancer tissues, miR-133a expression was not significantly downregulated, moreover miR-133b expression was significantly upregulated (p<0.05). Conclusions: Our study revealed dysregulation of expression of ten miRNAs in Turkish colon cancer patients. These miRNAs may be used as potential biomarkers for early detection, screening and surveillance of colorectal cancer, with functional effects on tumor cell behavior.

• The Journal of Advanced Prosthodontics
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• 제2권3호
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• pp.111-115
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• 2010

PURPOSE. This study was conducted to evaluate clinical validity of a zirconia full-coverage crown by comparing zirconia's wear capacity over antagonistic teeth with that of feldspathic dental porcelain. MATERIALS AND METHODS. The subject groups were divided into three groups: the polished feldspathic dental porcelain group (Group 1), the polished zirconia group (Group 2), and the polished zirconia with glazing group (Group 3). Twenty specimens were prepared from each group. Each procedure such as plasticity, condensation, and glazing was conducted according to the manufacturer's manual. A wear test was conducted with 240,000 chewing cycles using a dual-axis chewing simulator. The degree of wear of the antagonistic teeth was calculated by measuring the volume loss using a three-dimensional profiling system and ANSUR 3D software. The statistical significance of the measured degree of wear was tested with a significant level of 5% using one-way ANOVA and the Tukey test. RESULTS. The degrees of wear of the antagonistic teeth were $0.119{\pm}0.059\;mm^3$ in Group 1, $0.078{\pm}0.063\;mm^3$ in Group 3, and $0.031{\pm}0.033\;mm^3$ in Group 2. Statistical significance was found between Group 1 and Groups 2 and between Group 2 and 3, whereas no statistical significance was found between Group 1 and Group 3. CONCLUSION. Despite the limitations of this study on the evaluation of antagonistic teeth wear, the degree of antagonistic tooth wear was less in zirconia than feldspathic dental porcelain, representing that the zirconia may be more beneficial in terms of antagonistic tooth wear.

• 정보과학회 논문지
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• 제44권1호
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• pp.13-20
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• 2017

메시지 처리기란 클라이언트들로부터 수신된 다양한 포맷의 메시지를 수신 메시지 별 쓰레드를 생성하여 처리하고 그 결과를 목적지로 전달하는 서버 소프트웨어를 말한다. 본 논문에서는 SEDA(The Stage Event Driven Architecture) 구조의 메시지 처리기에서 각 수행함수가 CPU 또는 IO bound 특성을 가질 수 있다는 점에 착안하여, 수행 함수 별 특성을 고려해 쓰레드를 각 코어에 매핑하는 FC-TM(Function Characteristic aware Thread Mapping) 기법을 제안하였다. 본 논문에서는 메시지 처리에 필요한 각 수행함수의 특성이 정적인 것으로 가정하였다. 따라서 수행 가능한 함수를 미리 프로파일링(profiling)하여 특성을 분석한 후, 실제 수신되는 메시지에 따라 단위시간 당 처리량(throughput)이 최대가 되도록 쓰레드를 매핑하였다. 성능 평가 결과 IO bound한 함수가 특정 비율 이상 있을 경우, 기존 연구보다 단위시간당 처리량이 최대 72%까지 증가하였다.

• Asian Pacific Journal of Cancer Prevention
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• 제16권6호
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• pp.2489-2493
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• 2015

Background: Loss of heterozygosity (LOH) on chromosomal regions is crucial in tumor progression and this study aimed to identify genome-wide LOH in pancreatic cancer. Materials and Methods: Single-nucleotide polymorphism (SNP) profiling data GSE32682 of human pancreatic samples snap-frozen during surgery were downloaded from Gene Expression Omnibus database. Genotype console software was used to perform data processing. Candidate genes with LOH were screened based on the genotype calls, SNP loci of LOH and dbSNP database. Gene annotation was performed to identify the functions of candidate genes using NCBI (the National Center for Biotechnology Information) database, followed by Gene Ontology, INTERPRO, PFAM and SMART annotation and UCSC Genome Browser track to the unannotated genes using DAVID (the Database for Annotation, Visualization and Integration Discovery). Results: The candidate genes with LOH identified in this study were MCU, MICU1 and OIT3 on chromosome 10. MCU was found to encode a calcium transporter and MICU1 could encode an essential regulator of mitochondrial $Ca^{2+}$ uptake. OIT3 possibly correlated with calcium binding revealed by the annotation analyses and was regulated by a large number of transcription factors including STAT, SOX9, CREB, NF-kB, PPARG and p53. Conclusions: Global genomic analysis of SNPs identified MICU1, MCU and OIT3 with LOH on chromosome 10, implying involvement of these genes in progression of pancreatic cancer.