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Penicillium from Rhizosphere Soil in Terrestrial and Coastal Environments in South Korea

  • Park, Myung Soo;Lee, Jun Won;Kim, Sung Hyun;Park, Ji-Hyun;You, Young-Hyun;Lim, Young Woon
    • Mycobiology
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    • v.48 no.6
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    • pp.431-442
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    • 2020
  • Penicillium, the most common genus plays an important ecological role in various terrestrial and marine environments. However, only a few species have been reported from rhizosphere soil. As part of a project to excavate Korean indigenous fungi, we investigated rhizosphere soil of six plants in the forest (terrestrial habitat) and sand dunes (coastal habitat) and focused on discovering Penicillium species. A total of 64 strains were isolated and identified as 26 Penicillium species in nine sections based on morphological characteristics and the sequence analysis of β-tubulin and calmodulin. Although this is a small-scale study in a limited rhizosphere soil, eight unrecorded species and four potential new species have been identified. In addition, most Penicillium species from rhizosphere soil were unique to each plant. Penicillium halotolerans, P. scabrosum, P. samsonianum, P. jejuense, and P. janczewskii were commonly isolated from rhizosphere soil. Eight Penicillium species, P. aurantioviolaceum, P. bissettii, P. cairnsense, P. halotolerans, P. kananaskense, P. ortum, P. radiatolobatum, and P. verhagenii were recorded for the first time in Korea. Here, we provide the detailed morphological description of these unrecorded species.

A report of 156 unrecorded bacterial species of Republic of Korea belonging to the phyla Acidobacteriota, Deinococcota, Actinomycetota, Bacillota, Bacteroidota, and Pseudomonadota isolated in 2022

  • Kiseong Joh;Wonyong Kim;Myung Kyum Kim;Seung-Bum Kim;Chang-Jun Cha;Wan-Taek Im;Taegun Seo;Che-Ok Jeon;Jung-Hoon Yoon
    • Journal of Species Research
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    • v.12 no.4
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    • pp.374-414
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    • 2023
  • As part of a comprehensive investigation of indigenous prokaryotic species in Republic of Korea in 2022, 156 bacterial strains were isolated from diverse environmental habitats. These strains were assigned to six phyla, namely Acidobacteriota, Deinococcota, Actinomycetota, Bacillota, Bacteroidota, and Pseudomonadota. Each strain was identified based on 16S rRNA gene sequence similarity (>98.7%) and the formation of robust phylogenetic clades with their closest reported species. Among isolates, there is one species belonging to the phylum Acidobacteriota, one species belonging to the phylum Deinococcota, 28 species belonging to the phylum Actinomycetota, 19 species belonging to the phylum Bacillota, 19 species belonging to the phylum Bacteroidota, and 88 species belonging to the phylum Pseudomonadota (comprising 34 species of the class Alphaproteobacteria, 20 species of the class Betaproteobacteria, and 34 species of the class Gammaproteobacteria). Based on 16S rRNA gene sequence analysis, each strain was assigned to independent and predefined bacterial species. Since there were no published or official reports regarding these 156 isolates in Republic of Korea, they are reported as unrecorded species in Republic of Korea. The Gram stain, colony and cell morphology, basic biochemical characteristic, isolation source, and strain ID of each species are described in the species descriptions.

Morphological Variation and Karyotype of the Korean Species of Sticklebacks, (Pisces, Gasterosteridae) in Korea (한국산 큰가시고기과 어류의 형태변이와 핵형)

  • Kim, Ik-Soo;Yoon, Chang-Ho;Lee, Ji-Hyun
    • Animal Systematics, Evolution and Diversity
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    • v.5 no.2
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    • pp.107-119
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    • 1989
  • Three species of Korean sticklebacks family Gasterosteidae were reviewed based on the specimens of several populations for the study of their morphological variations and taxonomical positions. All specimens of Gasterosteus aculeatus observed have a complte row of lateral plates ranging from thirty-two to thirty-five in number. The low-plate morph regarded as landlocked type is virtually absent. And no difference was recognized among six populations of G. aculeatus in the meristic chracters, i.e. number of vertebrae, gill rakers and finrays. The Pungitius sinensis and P.kaibarae ssp. shown local variations have scutes ranging from 31 to 35, but not clinal in the morphometric characters. But P.sinensis was statistically different from P.kaibarae ssp. in some characters such as the number of dorsal spine rays and vertebrae, and body depth, although their ranges overlapped. No significant taxonomic difference was detected between white from and black from in dorsal spinous membrane of P.kailbarae ssp. Although these three species of Korean sticklebacks have the same diploid chromosome number (2N=42), G. aculeatus is obviously different from the two species of genus Pungitius in their karyotype ; G. aculeatus consists of six metacentrics, six submetacentrics, and thiry subtelo-acrocentrics, and both P.sinensis and P.kaibarae ssp. have four metacentrics, six submetacentrics, and thirty-four subtelo-acrocentrics.

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Effect of Pine Wilt Disease Control on the Distribution of Ground Beetles (Coleoptera: Carabidae)

  • Heo, Young-Jin;Ha, Man-Leung;Park, Jun-Young;Lee, Snag-Gon;Lee, Chong-Kyu
    • Journal of Forest and Environmental Science
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    • v.35 no.4
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    • pp.248-257
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    • 2019
  • We chose the Mt. Dalum area (located in Gijang-gun, Busan, Korea) for our survey, particularly The pine wilt disease zone and the non-permanent control area. This study investigates the effect of pine wilt disease on the distribution of beetle species in the process of ecosystem change due to insect control; pine forests treated for pine wilt disease were divided into insect control and non-control sites, respectively. The results of this study are as follows. Twen tyseven species belongs to 12 families were identified from 969 ground beetles collected from this sites. Species richness was the highest in Coleoptera (6 species, 469 individuals). In the control site, 21 species belongs to 10 families were identified from 228 individuals, while 24 species of 11 families from 533 individuals in the non-control area. The highest number of species were noted in June and July from the non- control and control sites, respectively. The highest number of insects in control and non-control sites was observed in July, while the lowest in September. Sipalinus gigas gigas, Spondylis buprestoides, Plesiophthalmus davidis, Calosoma maximowiczi, Damaster jankowskii jankowskii, and Damaster smaragdinus were captured in both study sites. Episomustur ntus and Glischrochilus ipsoides were only captured in the control site, while Macrodorcas rectus rectus and Pheropsophus javanus were only captured in the non-control site. Six beetles and five species (such as Calosoma maximowiczi) were found in the control site and six species (including Damaster smaragdinus) in the non-control site. The species distributions by altitude were 163, 518, and 258 individuals, at 100, 200 and 300 m sites, respectively. The diversity, evenness, and dominance indices in the control area were 0.764, 0.812, and 0.367, respectively. The diversity, evenness, and dominance indices in the non-control area were 0.927, 0.837, and 0.352, respectively. The similarity index between the control and non-control area was 80%.

A New Genus and a New Species of Aquatic Oribatid Mite (Acari: Oribatida) from Korea (한국산 수서성 날개응애의 1신속 1신종)

  • 최성식
    • The Korean Journal of Soil Zoology
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    • v.1 no.1
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    • pp.1-4
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    • 1996
  • This paper deals with a new genus, Mainothrus gen. n., and a new species, M. aquaticus sp. n., belonging to Trhypochthoniidae Willmann, 1931 from Korea. The key characters of the new genus distinguishable from other genera of Trhypochthoniidae are 1) six pairs of genital setae, 2) two pairs of anal setae, 3) fifteen pairs of notogastral setae, and 4) epimeral setal formula; 3-1-3-2.

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A Profile of Naturally Occurring Plasmids from Selected Strains of Vibrios

  • Younghee Kim
    • Journal of Environmental Science International
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    • v.1 no.2
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    • pp.93.2-97
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    • 1992
  • The naturally occurring plasmids of Vibrio species have been isolated in part to investigate their genetic traits. Among six different Vibrio species tested, Vibrio anguillarum, Vibrio fluvialis, Vibrio vulnificus, Vibrio mimicus and Vibrio furnissi did not show any presence of plasmid. One environmental isolate of Vibrio pnrahemolyticus harboring plasmid was observed. The isolated plasmid was 8.7 kb by analysis with restriction endonuclease digestion. No common feature was shown relationships between the presence of plasmid and resistance against commonly used antibiotic compounds from the tested Vibrios. Key words . plasmid, Vibrio anguillarum, Vibrio fluvialis, Vibrio uulnincus, Vibrio mimicus, Vibrio furnissi, Vibrio parahemolyticus.

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A Review of the Subfamily Osoriinae (Coleoptera, Staphylinidae) in Korea (한국산 투구반날개아과 (딱정벌레목: 반날개과)의 분류)

  • 조영복;안기정
    • Animal Systematics, Evolution and Diversity
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    • v.15 no.2
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    • pp.175-181
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    • 1999
  • A systematic review of the subjamily Osoriinae in Korea is presented. Six species are recognized, two of which are recorded for the first time in Korea [Eleusis coarctata Sharp and Mimogonus microps (Sharp)]. A key is provided for separation of the known species of the Osoriinae, and drawings of genitalia and photographs of habitus are presented.

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Intestinal Spirochaetes of the Genus Brachyspira: An Update on Recent Findings

  • Hampson, David J.
    • Proceedings of the Korean Society of Veterinary Pathology Conference
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    • 2003.10a
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    • pp.1-5
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    • 2003
  • A variety of different spirochaetal bacteria inhabit the large intestines of animals and man. This paper focuses on anaerobic intestinal spirochaetes of the genus Brachyspira (formerly Serpulina). Within the last few years, six new Brachyspira species have been officially name and/or renamed, and two other groups of these bacteria have been given provisional species names (Table 1). (omitted)

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A Profile of Naturally Occurring Plasmids from Selected Strains of Vibrios

  • Kim, Young-Hee
    • Environmental Sciences Bulletin of The Korean Environmental Sciences Society
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    • v.1 no.2
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    • pp.93-97
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    • 1997
  • The naturally occurring plasmids of Vibrio species have been isolated in part to investigate their genetic traits. Among six different Vibrio species tested, Vibrio anguillarum, Vibrio fluvialis, Vibrio vulnficus, Vibrio mimicus and Vibrio furnissi did not show any presence of plasmid. One environmental isolate of Vibrio parahaemolyticus harboring plasmid was observed. The isolated plasmid was 8.7 kb by analysis with restriction endonuclease digestion. No common feature was shown relationships between the presence of plasmid and resistance against commonly used antibiotic compounds from the tested Vibrios.

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